Experiment: D-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_4003 and Dshi_4004 are separated by 37 nucleotides Dshi_4004 and Dshi_4005 overlap by 4 nucleotides Dshi_4005 and Dshi_4006 overlap by 4 nucleotides
Dshi_4003: Dshi_4003 - hypothetical protein (RefSeq), at 65,932 to 67,803
_4003
Dshi_4004: Dshi_4004 - integrase family protein (RefSeq), at 67,841 to 69,367
_4004
Dshi_4005: Dshi_4005 - integrase family protein (RefSeq), at 69,364 to 70,275
_4005
Dshi_4006: Dshi_4006 - integrase family protein (RefSeq), at 70,272 to 71,276
_4006
Position (kb) 67
68
69
70 Strain fitness (log2 ratio) -1
0
1 at 66.861 kb on + strand, within Dshi_4003 at 66.949 kb on + strand, within Dshi_4003 at 66.949 kb on + strand, within Dshi_4003 at 67.051 kb on - strand, within Dshi_4003 at 67.106 kb on + strand, within Dshi_4003 at 67.106 kb on + strand, within Dshi_4003 at 67.128 kb on + strand, within Dshi_4003 at 67.218 kb on - strand, within Dshi_4003 at 67.218 kb on - strand, within Dshi_4003 at 67.237 kb on - strand, within Dshi_4003 at 67.338 kb on - strand, within Dshi_4003 at 67.343 kb on - strand, within Dshi_4003 at 67.461 kb on - strand, within Dshi_4003 at 67.693 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lactate (C) remove 66,861 + Dshi_4003 0.50 -0.4 66,949 + Dshi_4003 0.54 -0.0 66,949 + Dshi_4003 0.54 -0.6 67,051 - Dshi_4003 0.60 -1.1 67,106 + Dshi_4003 0.63 -0.4 67,106 + Dshi_4003 0.63 -0.2 67,128 + Dshi_4003 0.64 -0.7 67,218 - Dshi_4003 0.69 -1.7 67,218 - Dshi_4003 0.69 -0.4 67,237 - Dshi_4003 0.70 -0.1 67,338 - Dshi_4003 0.75 -0.5 67,343 - Dshi_4003 0.75 -1.0 67,461 - Dshi_4003 0.82 -0.3 67,693 - -0.6
Or see this region's nucleotide sequence