Experiment: D-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0823 and Dshi_0824 overlap by 4 nucleotides Dshi_0824 and Dshi_0825 are separated by 135 nucleotides
Dshi_0823: Dshi_0823 - two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq), at 827,784 to 829,175
_0823
Dshi_0824: Dshi_0824 - histidine kinase (RefSeq), at 829,172 to 830,701
_0824
Dshi_0825: Dshi_0825 - AMP-dependent synthetase and ligase (RefSeq), at 830,837 to 832,729
_0825
Position (kb) 829
830
831 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 828.257 kb on + strand, within Dshi_0823 at 828.288 kb on - strand, within Dshi_0823 at 828.432 kb on - strand, within Dshi_0823 at 828.432 kb on - strand, within Dshi_0823 at 828.578 kb on + strand, within Dshi_0823 at 828.607 kb on - strand, within Dshi_0823 at 828.607 kb on - strand, within Dshi_0823 at 828.621 kb on + strand, within Dshi_0823 at 828.638 kb on - strand, within Dshi_0823 at 828.687 kb on + strand, within Dshi_0823 at 828.687 kb on - strand, within Dshi_0823 at 828.694 kb on + strand, within Dshi_0823 at 828.697 kb on - strand, within Dshi_0823 at 828.790 kb on - strand, within Dshi_0823 at 828.831 kb on - strand, within Dshi_0823 at 828.936 kb on - strand, within Dshi_0823 at 828.938 kb on + strand, within Dshi_0823 at 828.983 kb on + strand, within Dshi_0823 at 829.070 kb on - strand at 829.088 kb on + strand at 829.179 kb on + strand at 829.281 kb on - strand at 829.357 kb on + strand, within Dshi_0824 at 829.436 kb on - strand, within Dshi_0824 at 829.598 kb on + strand, within Dshi_0824 at 829.618 kb on + strand, within Dshi_0824 at 829.638 kb on + strand, within Dshi_0824 at 829.719 kb on - strand, within Dshi_0824 at 829.808 kb on + strand, within Dshi_0824 at 829.824 kb on - strand, within Dshi_0824 at 829.921 kb on + strand, within Dshi_0824 at 829.939 kb on + strand, within Dshi_0824 at 829.939 kb on + strand, within Dshi_0824 at 829.952 kb on + strand, within Dshi_0824 at 829.960 kb on - strand, within Dshi_0824 at 829.960 kb on - strand, within Dshi_0824 at 829.970 kb on - strand, within Dshi_0824 at 830.026 kb on - strand, within Dshi_0824 at 830.261 kb on - strand, within Dshi_0824 at 830.261 kb on - strand, within Dshi_0824 at 830.434 kb on + strand, within Dshi_0824 at 830.434 kb on + strand, within Dshi_0824 at 830.434 kb on + strand, within Dshi_0824 at 830.442 kb on - strand, within Dshi_0824 at 830.707 kb on + strand at 830.766 kb on + strand at 830.824 kb on - strand at 830.964 kb on + strand at 830.979 kb on + strand at 831.062 kb on - strand, within Dshi_0825 at 831.138 kb on - strand, within Dshi_0825 at 831.280 kb on + strand, within Dshi_0825 at 831.410 kb on - strand, within Dshi_0825 at 831.452 kb on - strand, within Dshi_0825 at 831.511 kb on + strand, within Dshi_0825 at 831.546 kb on - strand, within Dshi_0825 at 831.596 kb on + strand, within Dshi_0825 at 831.692 kb on + strand, within Dshi_0825
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lactate (C) remove 828,257 + Dshi_0823 0.34 -0.7 828,288 - Dshi_0823 0.36 +0.4 828,432 - Dshi_0823 0.47 -0.0 828,432 - Dshi_0823 0.47 -0.3 828,578 + Dshi_0823 0.57 -0.1 828,607 - Dshi_0823 0.59 -0.4 828,607 - Dshi_0823 0.59 -0.1 828,621 + Dshi_0823 0.60 +0.3 828,638 - Dshi_0823 0.61 +0.8 828,687 + Dshi_0823 0.65 +1.8 828,687 - Dshi_0823 0.65 +0.4 828,694 + Dshi_0823 0.65 -0.3 828,697 - Dshi_0823 0.66 -0.3 828,790 - Dshi_0823 0.72 +1.3 828,831 - Dshi_0823 0.75 -1.2 828,936 - Dshi_0823 0.83 -0.1 828,938 + Dshi_0823 0.83 -0.0 828,983 + Dshi_0823 0.86 -0.4 829,070 - +0.0 829,088 + +0.3 829,179 + +0.0 829,281 - +0.6 829,357 + Dshi_0824 0.12 +0.2 829,436 - Dshi_0824 0.17 +3.0 829,598 + Dshi_0824 0.28 -2.1 829,618 + Dshi_0824 0.29 -0.1 829,638 + Dshi_0824 0.30 -0.3 829,719 - Dshi_0824 0.36 -1.8 829,808 + Dshi_0824 0.42 -2.0 829,824 - Dshi_0824 0.43 -0.6 829,921 + Dshi_0824 0.49 -0.3 829,939 + Dshi_0824 0.50 +0.4 829,939 + Dshi_0824 0.50 -0.5 829,952 + Dshi_0824 0.51 +0.2 829,960 - Dshi_0824 0.52 +1.4 829,960 - Dshi_0824 0.52 +0.5 829,970 - Dshi_0824 0.52 -1.0 830,026 - Dshi_0824 0.56 -0.2 830,261 - Dshi_0824 0.71 -0.2 830,261 - Dshi_0824 0.71 +0.8 830,434 + Dshi_0824 0.82 +0.2 830,434 + Dshi_0824 0.82 +0.5 830,434 + Dshi_0824 0.82 -0.5 830,442 - Dshi_0824 0.83 -0.3 830,707 + -0.2 830,766 + +0.9 830,824 - +0.7 830,964 + -1.9 830,979 + +0.4 831,062 - Dshi_0825 0.12 -0.2 831,138 - Dshi_0825 0.16 +0.1 831,280 + Dshi_0825 0.23 +0.1 831,410 - Dshi_0825 0.30 +0.5 831,452 - Dshi_0825 0.32 +0.0 831,511 + Dshi_0825 0.36 -1.5 831,546 - Dshi_0825 0.37 -0.2 831,596 + Dshi_0825 0.40 -0.8 831,692 + Dshi_0825 0.45 +0.1
Or see this region's nucleotide sequence