Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0743

Experiment: D-Lactate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDshi_0742 and Dshi_0743 are separated by 162 nucleotidesDshi_0743 and Dshi_0744 are separated by 81 nucleotides Dshi_0742: Dshi_0742 - protein of unknown function UPF0118 (RefSeq), at 749,426 to 750,511 _0742 Dshi_0743: Dshi_0743 - MscS Mechanosensitive ion channel (RefSeq), at 750,674 to 752,056 _0743 Dshi_0744: Dshi_0744 - prolyl-tRNA synthetase (RefSeq), at 752,138 to 753,475 _0744 Position (kb) 750 751 752 753Strain fitness (log2 ratio) -2 -1 0 1at 750.514 kb on - strandat 750.514 kb on - strandat 750.578 kb on - strandat 750.656 kb on - strandat 750.670 kb on + strandat 750.739 kb on + strandat 750.747 kb on - strandat 750.760 kb on - strandat 750.788 kb on - strandat 750.800 kb on + strandat 750.891 kb on + strand, within Dshi_0743at 750.923 kb on - strand, within Dshi_0743at 751.014 kb on + strand, within Dshi_0743at 751.034 kb on + strand, within Dshi_0743at 751.044 kb on + strand, within Dshi_0743at 751.129 kb on - strand, within Dshi_0743at 751.194 kb on - strand, within Dshi_0743at 751.260 kb on + strand, within Dshi_0743at 751.261 kb on + strand, within Dshi_0743at 751.268 kb on - strand, within Dshi_0743at 751.425 kb on - strand, within Dshi_0743at 751.479 kb on + strand, within Dshi_0743at 751.479 kb on + strand, within Dshi_0743at 751.487 kb on - strand, within Dshi_0743at 751.519 kb on - strand, within Dshi_0743at 751.539 kb on - strand, within Dshi_0743at 751.576 kb on + strand, within Dshi_0743at 751.582 kb on + strand, within Dshi_0743at 751.595 kb on + strand, within Dshi_0743at 751.608 kb on - strand, within Dshi_0743at 751.609 kb on - strand, within Dshi_0743at 751.705 kb on + strand, within Dshi_0743at 751.712 kb on - strand, within Dshi_0743at 751.712 kb on - strand, within Dshi_0743at 751.723 kb on - strand, within Dshi_0743at 751.792 kb on - strand, within Dshi_0743at 751.888 kb on - strand, within Dshi_0743at 752.033 kb on + strandat 752.078 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Lactate (C)
remove
750,514 - +0.4
750,514 - -2.0
750,578 - -0.5
750,656 - -0.3
750,670 + -0.3
750,739 + -0.3
750,747 - -0.6
750,760 - +0.1
750,788 - -0.0
750,800 + +0.1
750,891 + Dshi_0743 0.16 -0.1
750,923 - Dshi_0743 0.18 +1.4
751,014 + Dshi_0743 0.25 -0.5
751,034 + Dshi_0743 0.26 +0.4
751,044 + Dshi_0743 0.27 -0.2
751,129 - Dshi_0743 0.33 +0.8
751,194 - Dshi_0743 0.38 +0.2
751,260 + Dshi_0743 0.42 -0.7
751,261 + Dshi_0743 0.42 -0.8
751,268 - Dshi_0743 0.43 +0.8
751,425 - Dshi_0743 0.54 -1.3
751,479 + Dshi_0743 0.58 +0.3
751,479 + Dshi_0743 0.58 +0.3
751,487 - Dshi_0743 0.59 -0.5
751,519 - Dshi_0743 0.61 +0.6
751,539 - Dshi_0743 0.63 -1.4
751,576 + Dshi_0743 0.65 +0.7
751,582 + Dshi_0743 0.66 -0.6
751,595 + Dshi_0743 0.67 +0.4
751,608 - Dshi_0743 0.68 +0.4
751,609 - Dshi_0743 0.68 +0.1
751,705 + Dshi_0743 0.75 +0.4
751,712 - Dshi_0743 0.75 -0.3
751,712 - Dshi_0743 0.75 -1.9
751,723 - Dshi_0743 0.76 +0.3
751,792 - Dshi_0743 0.81 -1.9
751,888 - Dshi_0743 0.88 +0.4
752,033 + -0.5
752,078 + +0.6

Or see this region's nucleotide sequence