Experiment: D-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0742 and Dshi_0743 are separated by 162 nucleotides Dshi_0743 and Dshi_0744 are separated by 81 nucleotides
Dshi_0742: Dshi_0742 - protein of unknown function UPF0118 (RefSeq), at 749,426 to 750,511
_0742
Dshi_0743: Dshi_0743 - MscS Mechanosensitive ion channel (RefSeq), at 750,674 to 752,056
_0743
Dshi_0744: Dshi_0744 - prolyl-tRNA synthetase (RefSeq), at 752,138 to 753,475
_0744
Position (kb)
750
751
752
753 Strain fitness (log2 ratio)
-2
-1
0
1 at 750.514 kb on - strand at 750.514 kb on - strand at 750.578 kb on - strand at 750.656 kb on - strand at 750.670 kb on + strand at 750.739 kb on + strand at 750.747 kb on - strand at 750.760 kb on - strand at 750.788 kb on - strand at 750.800 kb on + strand at 750.891 kb on + strand, within Dshi_0743 at 750.923 kb on - strand, within Dshi_0743 at 751.014 kb on + strand, within Dshi_0743 at 751.034 kb on + strand, within Dshi_0743 at 751.044 kb on + strand, within Dshi_0743 at 751.129 kb on - strand, within Dshi_0743 at 751.194 kb on - strand, within Dshi_0743 at 751.260 kb on + strand, within Dshi_0743 at 751.261 kb on + strand, within Dshi_0743 at 751.268 kb on - strand, within Dshi_0743 at 751.425 kb on - strand, within Dshi_0743 at 751.479 kb on + strand, within Dshi_0743 at 751.479 kb on + strand, within Dshi_0743 at 751.487 kb on - strand, within Dshi_0743 at 751.519 kb on - strand, within Dshi_0743 at 751.539 kb on - strand, within Dshi_0743 at 751.576 kb on + strand, within Dshi_0743 at 751.582 kb on + strand, within Dshi_0743 at 751.595 kb on + strand, within Dshi_0743 at 751.608 kb on - strand, within Dshi_0743 at 751.609 kb on - strand, within Dshi_0743 at 751.705 kb on + strand, within Dshi_0743 at 751.712 kb on - strand, within Dshi_0743 at 751.712 kb on - strand, within Dshi_0743 at 751.723 kb on - strand, within Dshi_0743 at 751.792 kb on - strand, within Dshi_0743 at 751.888 kb on - strand, within Dshi_0743 at 752.033 kb on + strand at 752.078 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lactate (C) remove 750,514 - +0.4 750,514 - -2.0 750,578 - -0.5 750,656 - -0.3 750,670 + -0.3 750,739 + -0.3 750,747 - -0.6 750,760 - +0.1 750,788 - -0.0 750,800 + +0.1 750,891 + Dshi_0743 0.16 -0.1 750,923 - Dshi_0743 0.18 +1.4 751,014 + Dshi_0743 0.25 -0.5 751,034 + Dshi_0743 0.26 +0.4 751,044 + Dshi_0743 0.27 -0.2 751,129 - Dshi_0743 0.33 +0.8 751,194 - Dshi_0743 0.38 +0.2 751,260 + Dshi_0743 0.42 -0.7 751,261 + Dshi_0743 0.42 -0.8 751,268 - Dshi_0743 0.43 +0.8 751,425 - Dshi_0743 0.54 -1.3 751,479 + Dshi_0743 0.58 +0.3 751,479 + Dshi_0743 0.58 +0.3 751,487 - Dshi_0743 0.59 -0.5 751,519 - Dshi_0743 0.61 +0.6 751,539 - Dshi_0743 0.63 -1.4 751,576 + Dshi_0743 0.65 +0.7 751,582 + Dshi_0743 0.66 -0.6 751,595 + Dshi_0743 0.67 +0.4 751,608 - Dshi_0743 0.68 +0.4 751,609 - Dshi_0743 0.68 +0.1 751,705 + Dshi_0743 0.75 +0.4 751,712 - Dshi_0743 0.75 -0.3 751,712 - Dshi_0743 0.75 -1.9 751,723 - Dshi_0743 0.76 +0.3 751,792 - Dshi_0743 0.81 -1.9 751,888 - Dshi_0743 0.88 +0.4 752,033 + -0.5 752,078 + +0.6
Or see this region's nucleotide sequence