Experiment: D-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0576 and Dshi_0577 are separated by 90 nucleotides Dshi_0577 and Dshi_0578 overlap by 4 nucleotides
Dshi_0576: Dshi_0576 - transcriptional regulator, LysR family (RefSeq), at 565,766 to 566,635
_0576
Dshi_0577: Dshi_0577 - aldehyde dehydrogenase (RefSeq), at 566,726 to 568,177
_0577
Dshi_0578: Dshi_0578 - peptidase M19 renal dipeptidase (RefSeq), at 568,174 to 569,184
_0578
Position (kb) 566
567
568
569 Strain fitness (log2 ratio) -2
-1
0
1
2 at 565.764 kb on - strand at 565.823 kb on - strand at 565.848 kb on - strand at 565.849 kb on + strand at 565.869 kb on - strand, within Dshi_0576 at 565.882 kb on - strand, within Dshi_0576 at 565.884 kb on + strand, within Dshi_0576 at 565.892 kb on - strand, within Dshi_0576 at 565.913 kb on - strand, within Dshi_0576 at 565.949 kb on + strand, within Dshi_0576 at 565.983 kb on - strand, within Dshi_0576 at 565.983 kb on - strand, within Dshi_0576 at 565.992 kb on + strand, within Dshi_0576 at 566.015 kb on - strand, within Dshi_0576 at 566.079 kb on + strand, within Dshi_0576 at 566.091 kb on + strand, within Dshi_0576 at 566.099 kb on - strand, within Dshi_0576 at 566.099 kb on - strand, within Dshi_0576 at 566.099 kb on - strand, within Dshi_0576 at 566.108 kb on + strand, within Dshi_0576 at 566.108 kb on + strand, within Dshi_0576 at 566.116 kb on - strand, within Dshi_0576 at 566.127 kb on + strand, within Dshi_0576 at 566.128 kb on - strand, within Dshi_0576 at 566.145 kb on - strand, within Dshi_0576 at 566.177 kb on + strand, within Dshi_0576 at 566.224 kb on + strand, within Dshi_0576 at 566.228 kb on - strand, within Dshi_0576 at 566.279 kb on + strand, within Dshi_0576 at 566.287 kb on - strand, within Dshi_0576 at 566.349 kb on + strand, within Dshi_0576 at 566.380 kb on - strand, within Dshi_0576 at 566.397 kb on + strand, within Dshi_0576 at 566.413 kb on + strand, within Dshi_0576 at 566.439 kb on + strand, within Dshi_0576 at 566.449 kb on + strand, within Dshi_0576 at 566.458 kb on - strand, within Dshi_0576 at 566.494 kb on - strand, within Dshi_0576 at 566.499 kb on + strand, within Dshi_0576 at 566.508 kb on + strand, within Dshi_0576 at 566.516 kb on - strand, within Dshi_0576 at 566.516 kb on - strand, within Dshi_0576 at 566.534 kb on - strand, within Dshi_0576 at 566.552 kb on + strand at 566.573 kb on + strand at 566.596 kb on + strand at 566.599 kb on + strand at 566.604 kb on - strand at 566.615 kb on - strand at 566.615 kb on - strand at 566.699 kb on - strand at 566.716 kb on + strand at 566.716 kb on + strand at 566.719 kb on - strand at 566.724 kb on - strand at 566.756 kb on - strand at 566.766 kb on - strand at 566.771 kb on - strand at 566.808 kb on + strand at 566.808 kb on + strand at 566.816 kb on - strand at 566.823 kb on - strand at 566.844 kb on - strand at 566.848 kb on - strand at 566.848 kb on - strand at 566.848 kb on - strand at 566.848 kb on - strand at 566.888 kb on - strand, within Dshi_0577 at 566.888 kb on - strand, within Dshi_0577 at 566.888 kb on - strand, within Dshi_0577 at 566.953 kb on - strand at 566.998 kb on + strand, within Dshi_0577 at 567.012 kb on - strand, within Dshi_0577 at 567.016 kb on + strand, within Dshi_0577 at 567.039 kb on - strand, within Dshi_0577 at 567.120 kb on + strand, within Dshi_0577 at 567.135 kb on + strand, within Dshi_0577 at 567.143 kb on - strand, within Dshi_0577 at 567.184 kb on + strand, within Dshi_0577 at 567.217 kb on + strand, within Dshi_0577 at 567.275 kb on + strand, within Dshi_0577 at 567.275 kb on + strand, within Dshi_0577 at 567.278 kb on - strand, within Dshi_0577 at 567.315 kb on - strand, within Dshi_0577 at 567.317 kb on - strand, within Dshi_0577 at 567.319 kb on + strand, within Dshi_0577 at 567.319 kb on + strand, within Dshi_0577 at 567.325 kb on - strand, within Dshi_0577 at 567.327 kb on - strand, within Dshi_0577 at 567.327 kb on - strand, within Dshi_0577 at 567.360 kb on + strand, within Dshi_0577 at 567.361 kb on - strand, within Dshi_0577 at 567.387 kb on + strand, within Dshi_0577 at 567.392 kb on + strand, within Dshi_0577 at 567.510 kb on + strand, within Dshi_0577 at 567.529 kb on - strand, within Dshi_0577 at 567.534 kb on - strand, within Dshi_0577 at 567.589 kb on + strand, within Dshi_0577 at 567.590 kb on + strand, within Dshi_0577 at 567.590 kb on + strand, within Dshi_0577 at 567.598 kb on - strand, within Dshi_0577 at 567.598 kb on - strand, within Dshi_0577 at 567.654 kb on - strand, within Dshi_0577 at 567.666 kb on + strand, within Dshi_0577 at 567.667 kb on - strand, within Dshi_0577 at 567.676 kb on - strand, within Dshi_0577 at 567.723 kb on + strand, within Dshi_0577 at 567.751 kb on - strand, within Dshi_0577 at 567.756 kb on - strand, within Dshi_0577 at 567.761 kb on + strand, within Dshi_0577 at 567.761 kb on + strand, within Dshi_0577 at 567.766 kb on + strand, within Dshi_0577 at 567.808 kb on + strand, within Dshi_0577 at 567.888 kb on - strand, within Dshi_0577 at 567.925 kb on - strand, within Dshi_0577 at 567.960 kb on + strand, within Dshi_0577 at 568.089 kb on + strand at 568.138 kb on + strand at 568.155 kb on - strand at 568.176 kb on - strand at 568.247 kb on + strand at 568.247 kb on + strand at 568.424 kb on + strand, within Dshi_0578 at 568.424 kb on + strand, within Dshi_0578 at 568.461 kb on + strand, within Dshi_0578 at 568.469 kb on - strand, within Dshi_0578 at 568.469 kb on - strand, within Dshi_0578 at 568.486 kb on - strand, within Dshi_0578 at 568.607 kb on + strand, within Dshi_0578 at 568.607 kb on + strand, within Dshi_0578 at 568.611 kb on + strand, within Dshi_0578 at 568.743 kb on + strand, within Dshi_0578 at 568.800 kb on + strand, within Dshi_0578 at 568.800 kb on + strand, within Dshi_0578 at 568.808 kb on - strand, within Dshi_0578 at 568.833 kb on - strand, within Dshi_0578 at 568.900 kb on - strand, within Dshi_0578 at 568.900 kb on - strand, within Dshi_0578 at 568.930 kb on + strand, within Dshi_0578 at 568.939 kb on + strand, within Dshi_0578 at 568.960 kb on - strand, within Dshi_0578 at 568.971 kb on - strand, within Dshi_0578 at 568.972 kb on + strand, within Dshi_0578 at 569.038 kb on - strand, within Dshi_0578 at 569.054 kb on - strand, within Dshi_0578 at 569.064 kb on - strand, within Dshi_0578 at 569.071 kb on + strand, within Dshi_0578
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lactate (C) remove 565,764 - -0.6 565,823 - -0.9 565,848 - -0.8 565,849 + -0.6 565,869 - Dshi_0576 0.12 -0.7 565,882 - Dshi_0576 0.13 -0.6 565,884 + Dshi_0576 0.14 -0.9 565,892 - Dshi_0576 0.14 +0.6 565,913 - Dshi_0576 0.17 -0.6 565,949 + Dshi_0576 0.21 -1.5 565,983 - Dshi_0576 0.25 -0.3 565,983 - Dshi_0576 0.25 -0.1 565,992 + Dshi_0576 0.26 -0.5 566,015 - Dshi_0576 0.29 +0.5 566,079 + Dshi_0576 0.36 +0.3 566,091 + Dshi_0576 0.37 -0.5 566,099 - Dshi_0576 0.38 -0.6 566,099 - Dshi_0576 0.38 +0.3 566,099 - Dshi_0576 0.38 -0.8 566,108 + Dshi_0576 0.39 +0.7 566,108 + Dshi_0576 0.39 -1.0 566,116 - Dshi_0576 0.40 -0.3 566,127 + Dshi_0576 0.41 -0.1 566,128 - Dshi_0576 0.42 -1.0 566,145 - Dshi_0576 0.44 -0.1 566,177 + Dshi_0576 0.47 -0.3 566,224 + Dshi_0576 0.53 +0.4 566,228 - Dshi_0576 0.53 -0.8 566,279 + Dshi_0576 0.59 +1.5 566,287 - Dshi_0576 0.60 -0.2 566,349 + Dshi_0576 0.67 -1.1 566,380 - Dshi_0576 0.71 -0.4 566,397 + Dshi_0576 0.73 -0.9 566,413 + Dshi_0576 0.74 +0.9 566,439 + Dshi_0576 0.77 -0.1 566,449 + Dshi_0576 0.79 +0.4 566,458 - Dshi_0576 0.80 -1.0 566,494 - Dshi_0576 0.84 -0.3 566,499 + Dshi_0576 0.84 -2.0 566,508 + Dshi_0576 0.85 +0.4 566,516 - Dshi_0576 0.86 -1.2 566,516 - Dshi_0576 0.86 +0.0 566,534 - Dshi_0576 0.88 -0.2 566,552 + +0.9 566,573 + -0.3 566,596 + -0.4 566,599 + +0.1 566,604 - +0.0 566,615 - -1.2 566,615 - -1.0 566,699 - -1.1 566,716 + -0.5 566,716 + -0.9 566,719 - -0.1 566,724 - -0.5 566,756 - +0.7 566,766 - -0.4 566,771 - -0.5 566,808 + -0.3 566,808 + +0.0 566,816 - +1.6 566,823 - -1.0 566,844 - -0.2 566,848 - +0.6 566,848 - -1.0 566,848 - +0.4 566,848 - +0.9 566,888 - Dshi_0577 0.11 -0.9 566,888 - Dshi_0577 0.11 -0.6 566,888 - Dshi_0577 0.11 -0.5 566,953 - +2.3 566,998 + Dshi_0577 0.19 -0.7 567,012 - Dshi_0577 0.20 -0.2 567,016 + Dshi_0577 0.20 +0.2 567,039 - Dshi_0577 0.22 +1.1 567,120 + Dshi_0577 0.27 +0.2 567,135 + Dshi_0577 0.28 -0.1 567,143 - Dshi_0577 0.29 -0.5 567,184 + Dshi_0577 0.32 -0.8 567,217 + Dshi_0577 0.34 -0.4 567,275 + Dshi_0577 0.38 -0.6 567,275 + Dshi_0577 0.38 +0.4 567,278 - Dshi_0577 0.38 -0.4 567,315 - Dshi_0577 0.41 -0.7 567,317 - Dshi_0577 0.41 -0.6 567,319 + Dshi_0577 0.41 -0.4 567,319 + Dshi_0577 0.41 +0.4 567,325 - Dshi_0577 0.41 -0.3 567,327 - Dshi_0577 0.41 -1.0 567,327 - Dshi_0577 0.41 -0.3 567,360 + Dshi_0577 0.44 +0.4 567,361 - Dshi_0577 0.44 -0.8 567,387 + Dshi_0577 0.46 +0.3 567,392 + Dshi_0577 0.46 -0.4 567,510 + Dshi_0577 0.54 -0.2 567,529 - Dshi_0577 0.55 +0.7 567,534 - Dshi_0577 0.56 +0.2 567,589 + Dshi_0577 0.59 -0.8 567,590 + Dshi_0577 0.60 -0.3 567,590 + Dshi_0577 0.60 -1.5 567,598 - Dshi_0577 0.60 -1.4 567,598 - Dshi_0577 0.60 -0.3 567,654 - Dshi_0577 0.64 -1.3 567,666 + Dshi_0577 0.65 +0.2 567,667 - Dshi_0577 0.65 -0.7 567,676 - Dshi_0577 0.65 -0.7 567,723 + Dshi_0577 0.69 -0.8 567,751 - Dshi_0577 0.71 -0.5 567,756 - Dshi_0577 0.71 +0.1 567,761 + Dshi_0577 0.71 +0.3 567,761 + Dshi_0577 0.71 -0.4 567,766 + Dshi_0577 0.72 -0.1 567,808 + Dshi_0577 0.75 -1.3 567,888 - Dshi_0577 0.80 +0.6 567,925 - Dshi_0577 0.83 -0.1 567,960 + Dshi_0577 0.85 -1.4 568,089 + -0.4 568,138 + -0.2 568,155 - +0.1 568,176 - -0.9 568,247 + -1.0 568,247 + -0.8 568,424 + Dshi_0578 0.25 -0.5 568,424 + Dshi_0578 0.25 +1.3 568,461 + Dshi_0578 0.28 -0.2 568,469 - Dshi_0578 0.29 +0.1 568,469 - Dshi_0578 0.29 -0.5 568,486 - Dshi_0578 0.31 -0.5 568,607 + Dshi_0578 0.43 +0.7 568,607 + Dshi_0578 0.43 +0.9 568,611 + Dshi_0578 0.43 -0.1 568,743 + Dshi_0578 0.56 -0.3 568,800 + Dshi_0578 0.62 -1.2 568,800 + Dshi_0578 0.62 +0.6 568,808 - Dshi_0578 0.63 +0.6 568,833 - Dshi_0578 0.65 -0.4 568,900 - Dshi_0578 0.72 -0.1 568,900 - Dshi_0578 0.72 -1.0 568,930 + Dshi_0578 0.75 -0.8 568,939 + Dshi_0578 0.76 -0.4 568,960 - Dshi_0578 0.78 +0.2 568,971 - Dshi_0578 0.79 +0.4 568,972 + Dshi_0578 0.79 -0.2 569,038 - Dshi_0578 0.85 -1.0 569,054 - Dshi_0578 0.87 -0.4 569,064 - Dshi_0578 0.88 -0.3 569,071 + Dshi_0578 0.89 -0.2
Or see this region's nucleotide sequence