Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c09280

Experiment: D-Fructose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c09260 and PGA1_c09270 are separated by 144 nucleotidesPGA1_c09270 and PGA1_c09280 are separated by 132 nucleotidesPGA1_c09280 and PGA1_c09290 are separated by 104 nucleotidesPGA1_c09290 and PGA1_c09300 are separated by 176 nucleotides PGA1_c09260: PGA1_c09260 - Uncharacterized conserved protein, at 948,723 to 949,169 _c09260 PGA1_c09270: PGA1_c09270 - 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase HisA, at 949,314 to 950,036 _c09270 PGA1_c09280: PGA1_c09280 - Uncharacterized protein conserved in bacteria, at 950,169 to 950,555 _c09280 PGA1_c09290: PGA1_c09290 - WGR domain., at 950,660 to 950,911 _c09290 PGA1_c09300: PGA1_c09300 - Peroxiredoxin, at 951,088 to 951,624 _c09300 Position (kb) 950 951Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 949.235 kb on - strandat 949.282 kb on + strandat 949.285 kb on - strandat 949.290 kb on - strandat 949.329 kb on + strandat 950.117 kb on + strandat 950.195 kb on - strandat 950.213 kb on - strand, within PGA1_c09280at 950.214 kb on + strand, within PGA1_c09280at 950.222 kb on - strand, within PGA1_c09280at 950.227 kb on - strand, within PGA1_c09280at 950.277 kb on - strand, within PGA1_c09280at 950.294 kb on + strand, within PGA1_c09280at 950.297 kb on + strand, within PGA1_c09280at 950.310 kb on - strand, within PGA1_c09280at 950.343 kb on + strand, within PGA1_c09280at 950.421 kb on + strand, within PGA1_c09280at 950.426 kb on + strand, within PGA1_c09280at 950.435 kb on - strand, within PGA1_c09280at 950.444 kb on - strand, within PGA1_c09280at 950.464 kb on + strand, within PGA1_c09280at 950.465 kb on + strand, within PGA1_c09280at 950.514 kb on + strand, within PGA1_c09280at 950.522 kb on - strandat 950.532 kb on - strandat 950.532 kb on - strandat 950.601 kb on + strandat 950.606 kb on + strandat 950.658 kb on + strandat 950.666 kb on - strandat 950.666 kb on - strandat 950.666 kb on - strandat 950.781 kb on + strand, within PGA1_c09290at 950.802 kb on + strand, within PGA1_c09290at 950.802 kb on + strand, within PGA1_c09290at 950.810 kb on - strand, within PGA1_c09290at 950.812 kb on + strand, within PGA1_c09290at 950.859 kb on + strand, within PGA1_c09290at 950.859 kb on + strand, within PGA1_c09290at 950.903 kb on + strandat 950.903 kb on + strandat 950.903 kb on + strandat 950.903 kb on + strandat 950.911 kb on - strandat 950.911 kb on - strandat 950.911 kb on - strandat 950.911 kb on - strandat 950.954 kb on + strandat 950.954 kb on + strandat 950.954 kb on - strandat 950.962 kb on - strandat 950.962 kb on - strandat 950.962 kb on - strandat 950.962 kb on - strandat 950.962 kb on - strandat 950.969 kb on + strandat 951.032 kb on - strandat 951.094 kb on - strandat 951.190 kb on + strand, within PGA1_c09300at 951.190 kb on + strand, within PGA1_c09300at 951.193 kb on - strand, within PGA1_c09300at 951.195 kb on + strand, within PGA1_c09300at 951.198 kb on - strand, within PGA1_c09300at 951.198 kb on - strand, within PGA1_c09300at 951.198 kb on - strand, within PGA1_c09300at 951.203 kb on + strand, within PGA1_c09300at 951.203 kb on - strand, within PGA1_c09300at 951.203 kb on - strand, within PGA1_c09300at 951.219 kb on + strand, within PGA1_c09300at 951.230 kb on + strand, within PGA1_c09300at 951.230 kb on + strand, within PGA1_c09300at 951.238 kb on - strand, within PGA1_c09300at 951.267 kb on + strand, within PGA1_c09300at 951.275 kb on - strand, within PGA1_c09300at 951.320 kb on - strand, within PGA1_c09300at 951.350 kb on - strand, within PGA1_c09300at 951.350 kb on - strand, within PGA1_c09300at 951.350 kb on - strand, within PGA1_c09300at 951.368 kb on + strand, within PGA1_c09300at 951.371 kb on - strand, within PGA1_c09300at 951.394 kb on + strand, within PGA1_c09300at 951.402 kb on - strand, within PGA1_c09300at 951.527 kb on + strand, within PGA1_c09300at 951.540 kb on - strand, within PGA1_c09300

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose (C)
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949,235 - -0.5
949,282 + -0.2
949,285 - -0.6
949,290 - +1.0
949,329 + -0.5
950,117 + +1.7
950,195 - -1.5
950,213 - PGA1_c09280 0.11 -1.5
950,214 + PGA1_c09280 0.12 -0.4
950,222 - PGA1_c09280 0.14 +0.4
950,227 - PGA1_c09280 0.15 -0.5
950,277 - PGA1_c09280 0.28 +1.0
950,294 + PGA1_c09280 0.32 +0.2
950,297 + PGA1_c09280 0.33 +0.4
950,310 - PGA1_c09280 0.36 -0.8
950,343 + PGA1_c09280 0.45 +0.1
950,421 + PGA1_c09280 0.65 -2.4
950,426 + PGA1_c09280 0.66 -1.6
950,435 - PGA1_c09280 0.69 +0.8
950,444 - PGA1_c09280 0.71 -1.0
950,464 + PGA1_c09280 0.76 -1.5
950,465 + PGA1_c09280 0.76 +0.8
950,514 + PGA1_c09280 0.89 -2.2
950,522 - -1.3
950,532 - +1.5
950,532 - -0.2
950,601 + +0.4
950,606 + +0.7
950,658 + -0.4
950,666 - -3.5
950,666 - -1.6
950,666 - +1.1
950,781 + PGA1_c09290 0.48 +2.3
950,802 + PGA1_c09290 0.56 -0.8
950,802 + PGA1_c09290 0.56 +1.9
950,810 - PGA1_c09290 0.60 +2.3
950,812 + PGA1_c09290 0.60 +1.5
950,859 + PGA1_c09290 0.79 -0.9
950,859 + PGA1_c09290 0.79 +0.2
950,903 + -0.6
950,903 + -2.8
950,903 + -2.9
950,903 + +2.4
950,911 - +0.7
950,911 - -0.2
950,911 - -1.5
950,911 - +0.9
950,954 + +0.2
950,954 + +0.3
950,954 - -0.3
950,962 - -1.6
950,962 - +1.6
950,962 - -0.7
950,962 - +0.8
950,962 - -1.8
950,969 + +1.5
951,032 - +0.0
951,094 - +2.7
951,190 + PGA1_c09300 0.19 +0.4
951,190 + PGA1_c09300 0.19 -0.9
951,193 - PGA1_c09300 0.20 +1.2
951,195 + PGA1_c09300 0.20 +1.0
951,198 - PGA1_c09300 0.20 +0.9
951,198 - PGA1_c09300 0.20 +1.4
951,198 - PGA1_c09300 0.20 -0.5
951,203 + PGA1_c09300 0.21 +0.7
951,203 - PGA1_c09300 0.21 -3.9
951,203 - PGA1_c09300 0.21 -0.8
951,219 + PGA1_c09300 0.24 -0.4
951,230 + PGA1_c09300 0.26 +1.5
951,230 + PGA1_c09300 0.26 +0.1
951,238 - PGA1_c09300 0.28 +0.2
951,267 + PGA1_c09300 0.33 +0.2
951,275 - PGA1_c09300 0.35 -0.1
951,320 - PGA1_c09300 0.43 +1.5
951,350 - PGA1_c09300 0.49 -2.2
951,350 - PGA1_c09300 0.49 +0.5
951,350 - PGA1_c09300 0.49 -0.9
951,368 + PGA1_c09300 0.52 -0.2
951,371 - PGA1_c09300 0.53 +0.8
951,394 + PGA1_c09300 0.57 -1.1
951,402 - PGA1_c09300 0.58 +1.4
951,527 + PGA1_c09300 0.82 -0.1
951,540 - PGA1_c09300 0.84 -2.3

Or see this region's nucleotide sequence