Experiment: D-Fructose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c08400 and PGA1_c08410 are separated by 93 nucleotides PGA1_c08410 and PGA1_c08420 are separated by 150 nucleotides PGA1_c08420 and PGA1_c08430 overlap by 4 nucleotides PGA1_c08430 and PGA1_c08440 are separated by 32 nucleotides
PGA1_c08400: PGA1_c08400 - Uncharacterized conserved protein, at 869,869 to 870,786
_c08400
PGA1_c08410: PGA1_c08410 - hypothetical protein, at 870,880 to 871,212
_c08410
PGA1_c08420: PGA1_c08420 - putative 3-hydroxyacyl-CoA dehydrogenase, at 871,363 to 872,838
_c08420
PGA1_c08430: PGA1_c08430 - short chain dehydrogenase / reductase, at 872,835 to 873,608
_c08430
PGA1_c08440: PGA1_c08440 - Helix-turn-helix., at 873,641 to 874,501
_c08440
Position (kb) 871
872
873 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 870.390 kb on + strand at 870.441 kb on - strand, within PGA1_c08400 at 870.443 kb on + strand, within PGA1_c08400 at 870.443 kb on + strand, within PGA1_c08400 at 870.462 kb on + strand, within PGA1_c08400 at 870.470 kb on - strand, within PGA1_c08400 at 870.474 kb on + strand, within PGA1_c08400 at 870.474 kb on + strand, within PGA1_c08400 at 870.474 kb on + strand, within PGA1_c08400 at 870.474 kb on + strand, within PGA1_c08400 at 870.482 kb on - strand, within PGA1_c08400 at 870.482 kb on - strand, within PGA1_c08400 at 870.503 kb on + strand, within PGA1_c08400 at 870.503 kb on + strand, within PGA1_c08400 at 870.522 kb on - strand, within PGA1_c08400 at 870.603 kb on - strand, within PGA1_c08400 at 870.620 kb on - strand, within PGA1_c08400 at 870.631 kb on - strand, within PGA1_c08400 at 870.635 kb on + strand, within PGA1_c08400 at 870.636 kb on + strand, within PGA1_c08400 at 870.643 kb on - strand, within PGA1_c08400 at 870.643 kb on - strand, within PGA1_c08400 at 870.691 kb on + strand, within PGA1_c08400 at 870.691 kb on + strand, within PGA1_c08400 at 870.699 kb on - strand at 870.705 kb on + strand at 870.713 kb on + strand at 870.728 kb on + strand at 870.750 kb on + strand at 870.750 kb on + strand at 870.750 kb on + strand at 870.750 kb on + strand at 870.756 kb on - strand at 870.756 kb on - strand at 870.756 kb on - strand at 870.758 kb on - strand at 870.759 kb on + strand at 870.816 kb on + strand at 870.816 kb on + strand at 870.816 kb on + strand at 870.816 kb on + strand at 870.816 kb on + strand at 870.816 kb on + strand at 870.816 kb on + strand at 870.816 kb on + strand at 870.816 kb on + strand at 870.816 kb on + strand at 870.816 kb on + strand at 870.816 kb on + strand at 870.816 kb on + strand at 870.816 kb on + strand at 870.816 kb on + strand at 870.818 kb on + strand at 870.824 kb on - strand at 870.824 kb on - strand at 870.824 kb on - strand at 870.824 kb on - strand at 870.824 kb on - strand at 870.837 kb on + strand at 870.837 kb on + strand at 870.837 kb on + strand at 870.842 kb on + strand at 870.845 kb on - strand at 870.860 kb on + strand at 870.904 kb on + strand at 870.923 kb on + strand, within PGA1_c08410 at 870.926 kb on + strand, within PGA1_c08410 at 870.930 kb on + strand, within PGA1_c08410 at 870.934 kb on - strand, within PGA1_c08410 at 870.936 kb on + strand, within PGA1_c08410 at 870.936 kb on + strand, within PGA1_c08410 at 870.992 kb on + strand, within PGA1_c08410 at 870.992 kb on + strand, within PGA1_c08410 at 871.000 kb on - strand, within PGA1_c08410 at 871.022 kb on - strand, within PGA1_c08410 at 871.050 kb on - strand, within PGA1_c08410 at 871.051 kb on + strand, within PGA1_c08410 at 871.082 kb on + strand, within PGA1_c08410 at 871.139 kb on + strand, within PGA1_c08410 at 871.147 kb on - strand, within PGA1_c08410 at 871.175 kb on + strand, within PGA1_c08410 at 871.185 kb on + strand at 871.185 kb on + strand at 871.185 kb on + strand at 871.185 kb on + strand at 871.185 kb on + strand at 871.193 kb on - strand at 871.207 kb on + strand at 871.215 kb on - strand at 871.225 kb on + strand at 871.301 kb on + strand at 871.301 kb on + strand at 871.301 kb on + strand at 871.301 kb on + strand at 871.309 kb on - strand at 871.381 kb on - strand at 871.391 kb on - strand at 871.391 kb on - strand at 871.396 kb on - strand at 871.396 kb on - strand at 871.421 kb on - strand at 871.464 kb on + strand at 871.472 kb on - strand at 871.500 kb on - strand at 871.500 kb on - strand at 871.500 kb on - strand at 871.546 kb on + strand, within PGA1_c08420 at 871.584 kb on + strand, within PGA1_c08420 at 871.656 kb on - strand, within PGA1_c08420 at 871.656 kb on - strand, within PGA1_c08420 at 871.735 kb on + strand, within PGA1_c08420 at 871.735 kb on + strand, within PGA1_c08420 at 871.748 kb on - strand, within PGA1_c08420 at 871.755 kb on + strand, within PGA1_c08420 at 871.755 kb on + strand, within PGA1_c08420 at 871.763 kb on - strand, within PGA1_c08420 at 871.809 kb on + strand, within PGA1_c08420 at 871.829 kb on - strand, within PGA1_c08420 at 871.886 kb on - strand, within PGA1_c08420 at 871.902 kb on + strand, within PGA1_c08420 at 872.046 kb on + strand, within PGA1_c08420 at 872.046 kb on + strand, within PGA1_c08420 at 872.054 kb on - strand, within PGA1_c08420 at 872.054 kb on - strand, within PGA1_c08420 at 872.054 kb on - strand, within PGA1_c08420 at 872.054 kb on - strand, within PGA1_c08420 at 872.111 kb on - strand, within PGA1_c08420 at 872.121 kb on - strand, within PGA1_c08420 at 872.129 kb on + strand, within PGA1_c08420 at 872.178 kb on + strand, within PGA1_c08420 at 872.249 kb on + strand, within PGA1_c08420 at 872.344 kb on - strand, within PGA1_c08420 at 872.381 kb on + strand, within PGA1_c08420 at 872.465 kb on + strand, within PGA1_c08420 at 872.473 kb on - strand, within PGA1_c08420 at 872.530 kb on + strand, within PGA1_c08420 at 872.636 kb on - strand, within PGA1_c08420 at 872.726 kb on + strand at 872.776 kb on - strand at 872.814 kb on - strand at 872.829 kb on + strand at 872.834 kb on + strand at 872.839 kb on + strand at 872.847 kb on + strand at 872.855 kb on - strand at 872.859 kb on + strand at 872.872 kb on - strand at 872.878 kb on + strand at 872.986 kb on + strand, within PGA1_c08430 at 873.045 kb on + strand, within PGA1_c08430 at 873.046 kb on + strand, within PGA1_c08430 at 873.046 kb on + strand, within PGA1_c08430 at 873.066 kb on + strand, within PGA1_c08430 at 873.076 kb on + strand, within PGA1_c08430 at 873.110 kb on + strand, within PGA1_c08430 at 873.110 kb on + strand, within PGA1_c08430 at 873.127 kb on - strand, within PGA1_c08430 at 873.203 kb on - strand, within PGA1_c08430 at 873.215 kb on + strand, within PGA1_c08430 at 873.284 kb on - strand, within PGA1_c08430 at 873.317 kb on + strand, within PGA1_c08430 at 873.319 kb on - strand, within PGA1_c08430 at 873.319 kb on - strand, within PGA1_c08430 at 873.357 kb on + strand, within PGA1_c08430 at 873.365 kb on - strand, within PGA1_c08430 at 873.370 kb on - strand, within PGA1_c08430 at 873.375 kb on - strand, within PGA1_c08430 at 873.394 kb on + strand, within PGA1_c08430 at 873.400 kb on - strand, within PGA1_c08430 at 873.410 kb on + strand, within PGA1_c08430 at 873.410 kb on + strand, within PGA1_c08430 at 873.415 kb on + strand, within PGA1_c08430 at 873.418 kb on - strand, within PGA1_c08430 at 873.446 kb on + strand, within PGA1_c08430 at 873.455 kb on + strand, within PGA1_c08430 at 873.457 kb on - strand, within PGA1_c08430 at 873.463 kb on - strand, within PGA1_c08430 at 873.463 kb on - strand, within PGA1_c08430 at 873.577 kb on + strand at 873.585 kb on - strand at 873.607 kb on + strand at 873.674 kb on + strand at 873.674 kb on + strand at 873.703 kb on - strand at 873.815 kb on + strand, within PGA1_c08440 at 873.828 kb on + strand, within PGA1_c08440 at 873.828 kb on + strand, within PGA1_c08440 at 873.828 kb on + strand, within PGA1_c08440 at 873.828 kb on + strand, within PGA1_c08440 at 873.828 kb on + strand, within PGA1_c08440 at 873.828 kb on + strand, within PGA1_c08440 at 873.828 kb on + strand, within PGA1_c08440 at 873.831 kb on - strand, within PGA1_c08440 at 873.836 kb on - strand, within PGA1_c08440 at 873.836 kb on - strand, within PGA1_c08440 at 873.836 kb on - strand, within PGA1_c08440 at 873.836 kb on - strand, within PGA1_c08440 at 873.836 kb on - strand, within PGA1_c08440
Per-strain Table
Position Strand Gene LocusTag Fraction D-Fructose (C) remove 870,390 + +0.0 870,441 - PGA1_c08400 0.62 -0.1 870,443 + PGA1_c08400 0.63 -1.0 870,443 + PGA1_c08400 0.63 +1.9 870,462 + PGA1_c08400 0.65 +2.1 870,470 - PGA1_c08400 0.65 +0.2 870,474 + PGA1_c08400 0.66 +0.7 870,474 + PGA1_c08400 0.66 -1.0 870,474 + PGA1_c08400 0.66 +1.5 870,474 + PGA1_c08400 0.66 -1.4 870,482 - PGA1_c08400 0.67 -0.8 870,482 - PGA1_c08400 0.67 -0.1 870,503 + PGA1_c08400 0.69 +0.3 870,503 + PGA1_c08400 0.69 -1.7 870,522 - PGA1_c08400 0.71 +3.1 870,603 - PGA1_c08400 0.80 +2.0 870,620 - PGA1_c08400 0.82 +0.8 870,631 - PGA1_c08400 0.83 -2.4 870,635 + PGA1_c08400 0.83 -1.8 870,636 + PGA1_c08400 0.84 +0.2 870,643 - PGA1_c08400 0.84 -1.4 870,643 - PGA1_c08400 0.84 -0.0 870,691 + PGA1_c08400 0.90 +0.6 870,691 + PGA1_c08400 0.90 +1.2 870,699 - -0.2 870,705 + -1.6 870,713 + -0.1 870,728 + +0.6 870,750 + +1.0 870,750 + +0.6 870,750 + -1.9 870,750 + -1.0 870,756 - -1.4 870,756 - +1.2 870,756 - +0.1 870,758 - +1.9 870,759 + -2.0 870,816 + +0.4 870,816 + +0.5 870,816 + -1.6 870,816 + +0.1 870,816 + +1.9 870,816 + +1.8 870,816 + -0.9 870,816 + -1.6 870,816 + +1.0 870,816 + +1.7 870,816 + -1.1 870,816 + +1.0 870,816 + +0.2 870,816 + +1.0 870,816 + +0.6 870,818 + +1.6 870,824 - -0.3 870,824 - -2.2 870,824 - -2.0 870,824 - +1.4 870,824 - +0.5 870,837 + +0.2 870,837 + +1.2 870,837 + +1.0 870,842 + +0.0 870,845 - +0.8 870,860 + +1.1 870,904 + -2.5 870,923 + PGA1_c08410 0.13 +1.4 870,926 + PGA1_c08410 0.14 -0.7 870,930 + PGA1_c08410 0.15 -2.3 870,934 - PGA1_c08410 0.16 +0.4 870,936 + PGA1_c08410 0.17 +1.2 870,936 + PGA1_c08410 0.17 +3.2 870,992 + PGA1_c08410 0.34 +0.0 870,992 + PGA1_c08410 0.34 +1.8 871,000 - PGA1_c08410 0.36 +0.9 871,022 - PGA1_c08410 0.43 -1.6 871,050 - PGA1_c08410 0.51 +0.2 871,051 + PGA1_c08410 0.51 +0.0 871,082 + PGA1_c08410 0.61 +0.6 871,139 + PGA1_c08410 0.78 +0.1 871,147 - PGA1_c08410 0.80 -1.0 871,175 + PGA1_c08410 0.89 +1.8 871,185 + +1.1 871,185 + +0.4 871,185 + -0.4 871,185 + -0.9 871,185 + +0.2 871,193 - +1.5 871,207 + -2.8 871,215 - +0.6 871,225 + +0.8 871,301 + +1.2 871,301 + +1.5 871,301 + +1.0 871,301 + +0.7 871,309 - +1.0 871,381 - +0.3 871,391 - +0.7 871,391 - +0.3 871,396 - +0.0 871,396 - +0.9 871,421 - -0.4 871,464 + -0.2 871,472 - -1.0 871,500 - -1.2 871,500 - +2.8 871,500 - -0.4 871,546 + PGA1_c08420 0.12 -1.1 871,584 + PGA1_c08420 0.15 -2.3 871,656 - PGA1_c08420 0.20 +0.5 871,656 - PGA1_c08420 0.20 -2.0 871,735 + PGA1_c08420 0.25 -1.5 871,735 + PGA1_c08420 0.25 +1.2 871,748 - PGA1_c08420 0.26 -1.5 871,755 + PGA1_c08420 0.27 -1.7 871,755 + PGA1_c08420 0.27 +0.2 871,763 - PGA1_c08420 0.27 -2.4 871,809 + PGA1_c08420 0.30 -1.4 871,829 - PGA1_c08420 0.32 -0.4 871,886 - PGA1_c08420 0.35 +0.0 871,902 + PGA1_c08420 0.37 -1.4 872,046 + PGA1_c08420 0.46 +0.1 872,046 + PGA1_c08420 0.46 -2.2 872,054 - PGA1_c08420 0.47 -2.4 872,054 - PGA1_c08420 0.47 -0.0 872,054 - PGA1_c08420 0.47 +0.2 872,054 - PGA1_c08420 0.47 +1.0 872,111 - PGA1_c08420 0.51 +1.2 872,121 - PGA1_c08420 0.51 -2.2 872,129 + PGA1_c08420 0.52 -2.3 872,178 + PGA1_c08420 0.55 -0.7 872,249 + PGA1_c08420 0.60 -0.7 872,344 - PGA1_c08420 0.66 -0.7 872,381 + PGA1_c08420 0.69 -3.5 872,465 + PGA1_c08420 0.75 +1.1 872,473 - PGA1_c08420 0.75 +0.6 872,530 + PGA1_c08420 0.79 +1.2 872,636 - PGA1_c08420 0.86 +2.9 872,726 + +0.3 872,776 - -0.1 872,814 - -0.1 872,829 + -1.8 872,834 + +0.4 872,839 + -1.1 872,847 + +0.6 872,855 - -0.2 872,859 + -0.4 872,872 - -1.6 872,878 + +1.1 872,986 + PGA1_c08430 0.20 -1.2 873,045 + PGA1_c08430 0.27 +1.8 873,046 + PGA1_c08430 0.27 +0.9 873,046 + PGA1_c08430 0.27 -1.4 873,066 + PGA1_c08430 0.30 -0.2 873,076 + PGA1_c08430 0.31 +0.6 873,110 + PGA1_c08430 0.36 +0.7 873,110 + PGA1_c08430 0.36 -2.3 873,127 - PGA1_c08430 0.38 -1.0 873,203 - PGA1_c08430 0.48 +1.4 873,215 + PGA1_c08430 0.49 -0.1 873,284 - PGA1_c08430 0.58 -1.5 873,317 + PGA1_c08430 0.62 +1.0 873,319 - PGA1_c08430 0.63 +1.4 873,319 - PGA1_c08430 0.63 -0.7 873,357 + PGA1_c08430 0.67 +0.6 873,365 - PGA1_c08430 0.68 +1.8 873,370 - PGA1_c08430 0.69 +0.9 873,375 - PGA1_c08430 0.70 -0.2 873,394 + PGA1_c08430 0.72 +1.7 873,400 - PGA1_c08430 0.73 -0.0 873,410 + PGA1_c08430 0.74 -2.6 873,410 + PGA1_c08430 0.74 -1.8 873,415 + PGA1_c08430 0.75 +1.1 873,418 - PGA1_c08430 0.75 +1.4 873,446 + PGA1_c08430 0.79 -3.5 873,455 + PGA1_c08430 0.80 -1.1 873,457 - PGA1_c08430 0.80 +1.8 873,463 - PGA1_c08430 0.81 +1.0 873,463 - PGA1_c08430 0.81 +1.7 873,577 + +1.2 873,585 - +0.0 873,607 + +0.7 873,674 + +0.9 873,674 + +1.8 873,703 - +1.2 873,815 + PGA1_c08440 0.20 +1.5 873,828 + PGA1_c08440 0.22 -2.2 873,828 + PGA1_c08440 0.22 +2.2 873,828 + PGA1_c08440 0.22 +1.2 873,828 + PGA1_c08440 0.22 +0.5 873,828 + PGA1_c08440 0.22 +0.5 873,828 + PGA1_c08440 0.22 +2.0 873,828 + PGA1_c08440 0.22 +0.3 873,831 - PGA1_c08440 0.22 +0.8 873,836 - PGA1_c08440 0.23 +0.3 873,836 - PGA1_c08440 0.23 -0.2 873,836 - PGA1_c08440 0.23 +1.8 873,836 - PGA1_c08440 0.23 -2.2 873,836 - PGA1_c08440 0.23 +1.0
Or see this region's nucleotide sequence