Experiment: D-Fructose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c07540 and PGA1_c07550 are separated by 182 nucleotides PGA1_c07550 and PGA1_c07560 are separated by 13 nucleotides PGA1_c07560 and PGA1_c07570 are separated by 99 nucleotides
PGA1_c07540: PGA1_c07540 - transcription factor carD-like protein, at 778,976 to 779,488
_c07540
PGA1_c07550: PGA1_c07550 - ion channel domain-containing protein, at 779,671 to 780,444
_c07550
PGA1_c07560: PGA1_c07560 - putative cobalamin-5-phosphate synthase, at 780,458 to 781,216
_c07560
PGA1_c07570: PGA1_c07570 - nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase CobT, at 781,316 to 782,332
_c07570
Position (kb) 779
780
781 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 778.738 kb on + strand at 779.452 kb on + strand at 779.503 kb on + strand at 779.561 kb on - strand at 779.598 kb on + strand at 779.606 kb on - strand at 779.606 kb on - strand at 779.612 kb on + strand at 779.612 kb on + strand at 779.612 kb on + strand at 779.620 kb on - strand at 779.620 kb on - strand at 779.620 kb on - strand at 779.620 kb on - strand at 779.620 kb on - strand at 779.666 kb on + strand at 779.743 kb on + strand at 779.799 kb on - strand, within PGA1_c07550 at 779.807 kb on + strand, within PGA1_c07550 at 779.815 kb on - strand, within PGA1_c07550 at 779.815 kb on - strand, within PGA1_c07550 at 779.815 kb on - strand, within PGA1_c07550 at 779.815 kb on - strand, within PGA1_c07550 at 779.815 kb on - strand, within PGA1_c07550 at 779.815 kb on - strand, within PGA1_c07550 at 779.821 kb on + strand, within PGA1_c07550 at 779.871 kb on + strand, within PGA1_c07550 at 779.901 kb on + strand, within PGA1_c07550 at 779.901 kb on + strand, within PGA1_c07550 at 779.967 kb on + strand, within PGA1_c07550 at 779.975 kb on - strand, within PGA1_c07550 at 779.982 kb on - strand, within PGA1_c07550 at 780.002 kb on + strand, within PGA1_c07550 at 780.002 kb on + strand, within PGA1_c07550 at 780.002 kb on + strand, within PGA1_c07550 at 780.002 kb on + strand, within PGA1_c07550 at 780.002 kb on + strand, within PGA1_c07550 at 780.002 kb on + strand, within PGA1_c07550 at 780.007 kb on + strand, within PGA1_c07550 at 780.010 kb on - strand, within PGA1_c07550 at 780.010 kb on - strand, within PGA1_c07550 at 780.010 kb on - strand, within PGA1_c07550 at 780.010 kb on - strand, within PGA1_c07550 at 780.092 kb on + strand, within PGA1_c07550 at 780.094 kb on - strand, within PGA1_c07550 at 780.184 kb on - strand, within PGA1_c07550 at 780.213 kb on - strand, within PGA1_c07550 at 780.218 kb on - strand, within PGA1_c07550 at 780.218 kb on - strand, within PGA1_c07550 at 780.287 kb on + strand, within PGA1_c07550 at 780.347 kb on + strand, within PGA1_c07550 at 780.407 kb on - strand at 780.459 kb on - strand at 780.462 kb on - strand at 780.469 kb on - strand at 780.477 kb on + strand at 781.231 kb on - strand at 781.235 kb on - strand at 781.241 kb on - strand at 781.241 kb on - strand at 781.242 kb on - strand at 781.242 kb on - strand at 781.244 kb on + strand at 781.293 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Fructose (C) remove 778,738 + -1.7 779,452 + +0.9 779,503 + +1.3 779,561 - +0.3 779,598 + -0.0 779,606 - -1.4 779,606 - +0.9 779,612 + -0.3 779,612 + -3.0 779,612 + -1.1 779,620 - +1.9 779,620 - -1.1 779,620 - -1.3 779,620 - -1.2 779,620 - -2.1 779,666 + -0.3 779,743 + -0.4 779,799 - PGA1_c07550 0.17 +1.7 779,807 + PGA1_c07550 0.18 +0.7 779,815 - PGA1_c07550 0.19 -0.6 779,815 - PGA1_c07550 0.19 -0.8 779,815 - PGA1_c07550 0.19 +1.6 779,815 - PGA1_c07550 0.19 -1.9 779,815 - PGA1_c07550 0.19 -2.0 779,815 - PGA1_c07550 0.19 -0.1 779,821 + PGA1_c07550 0.19 -2.8 779,871 + PGA1_c07550 0.26 +0.5 779,901 + PGA1_c07550 0.30 -1.9 779,901 + PGA1_c07550 0.30 +1.0 779,967 + PGA1_c07550 0.38 +1.4 779,975 - PGA1_c07550 0.39 +0.2 779,982 - PGA1_c07550 0.40 +2.8 780,002 + PGA1_c07550 0.43 +2.8 780,002 + PGA1_c07550 0.43 +0.1 780,002 + PGA1_c07550 0.43 -0.0 780,002 + PGA1_c07550 0.43 -0.8 780,002 + PGA1_c07550 0.43 +0.5 780,002 + PGA1_c07550 0.43 +0.7 780,007 + PGA1_c07550 0.43 -1.9 780,010 - PGA1_c07550 0.44 +3.0 780,010 - PGA1_c07550 0.44 -1.0 780,010 - PGA1_c07550 0.44 +0.8 780,010 - PGA1_c07550 0.44 -0.7 780,092 + PGA1_c07550 0.54 +0.4 780,094 - PGA1_c07550 0.55 +0.6 780,184 - PGA1_c07550 0.66 +0.0 780,213 - PGA1_c07550 0.70 -2.0 780,218 - PGA1_c07550 0.71 +1.3 780,218 - PGA1_c07550 0.71 +0.2 780,287 + PGA1_c07550 0.80 -1.2 780,347 + PGA1_c07550 0.87 +0.3 780,407 - -0.6 780,459 - -0.4 780,462 - -0.9 780,469 - +0.3 780,477 + -2.3 781,231 - -0.0 781,235 - -0.0 781,241 - +0.1 781,241 - +1.1 781,242 - +1.1 781,242 - -0.7 781,244 + +1.0 781,293 + +0.3
Or see this region's nucleotide sequence