Experiment: D-Fructose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c04120 and PGA1_c04130 are separated by 89 nucleotides PGA1_c04130 and PGA1_c04140 overlap by 4 nucleotides
PGA1_c04120: PGA1_c04120 - 3-ketoacyl-CoA thiolase FadA, at 399,154 to 400,329
_c04120
PGA1_c04130: PGA1_c04130 - putative acyl-CoA dehydrogenase, at 400,419 to 401,618
_c04130
PGA1_c04140: PGA1_c04140 - putative acyl-CoA dehydrogenase, at 401,615 to 402,760
_c04140
Position (kb) 400
401
402 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 399.440 kb on + strand, within PGA1_c04120 at 399.448 kb on - strand, within PGA1_c04120 at 399.513 kb on - strand, within PGA1_c04120 at 399.520 kb on + strand, within PGA1_c04120 at 399.577 kb on - strand, within PGA1_c04120 at 399.577 kb on - strand, within PGA1_c04120 at 399.650 kb on + strand, within PGA1_c04120 at 399.650 kb on + strand, within PGA1_c04120 at 399.650 kb on + strand, within PGA1_c04120 at 399.650 kb on + strand, within PGA1_c04120 at 399.650 kb on + strand, within PGA1_c04120 at 399.650 kb on + strand, within PGA1_c04120 at 399.650 kb on + strand, within PGA1_c04120 at 399.650 kb on + strand, within PGA1_c04120 at 399.656 kb on - strand, within PGA1_c04120 at 399.658 kb on - strand, within PGA1_c04120 at 399.658 kb on - strand, within PGA1_c04120 at 399.658 kb on - strand, within PGA1_c04120 at 399.658 kb on - strand, within PGA1_c04120 at 399.658 kb on - strand, within PGA1_c04120 at 399.658 kb on - strand, within PGA1_c04120 at 399.766 kb on - strand, within PGA1_c04120 at 399.828 kb on - strand, within PGA1_c04120 at 399.839 kb on + strand, within PGA1_c04120 at 399.894 kb on + strand, within PGA1_c04120 at 399.895 kb on + strand, within PGA1_c04120 at 399.902 kb on - strand, within PGA1_c04120 at 399.916 kb on + strand, within PGA1_c04120 at 399.934 kb on + strand, within PGA1_c04120 at 399.953 kb on + strand, within PGA1_c04120 at 399.961 kb on - strand, within PGA1_c04120 at 399.961 kb on - strand, within PGA1_c04120 at 399.961 kb on - strand, within PGA1_c04120 at 399.961 kb on - strand, within PGA1_c04120 at 400.051 kb on + strand, within PGA1_c04120 at 400.061 kb on + strand, within PGA1_c04120 at 400.093 kb on - strand, within PGA1_c04120 at 400.103 kb on - strand, within PGA1_c04120 at 400.103 kb on - strand, within PGA1_c04120 at 400.104 kb on - strand, within PGA1_c04120 at 400.155 kb on + strand, within PGA1_c04120 at 400.158 kb on - strand, within PGA1_c04120 at 400.222 kb on + strand at 400.230 kb on - strand at 400.233 kb on + strand at 400.281 kb on + strand at 400.307 kb on - strand at 400.336 kb on - strand at 400.354 kb on + strand at 400.362 kb on - strand at 400.362 kb on - strand at 400.362 kb on - strand at 400.400 kb on + strand at 400.491 kb on + strand at 400.499 kb on - strand at 400.522 kb on + strand at 400.522 kb on + strand at 400.527 kb on + strand at 400.540 kb on - strand, within PGA1_c04130 at 400.540 kb on - strand, within PGA1_c04130 at 400.585 kb on - strand, within PGA1_c04130 at 400.597 kb on + strand, within PGA1_c04130 at 400.600 kb on - strand, within PGA1_c04130 at 400.600 kb on - strand, within PGA1_c04130 at 400.629 kb on - strand, within PGA1_c04130 at 400.632 kb on + strand, within PGA1_c04130 at 400.677 kb on - strand, within PGA1_c04130 at 400.690 kb on + strand, within PGA1_c04130 at 400.698 kb on - strand, within PGA1_c04130 at 400.698 kb on - strand, within PGA1_c04130 at 400.743 kb on - strand, within PGA1_c04130 at 400.743 kb on - strand, within PGA1_c04130 at 400.743 kb on - strand, within PGA1_c04130 at 400.799 kb on - strand, within PGA1_c04130 at 400.800 kb on - strand, within PGA1_c04130 at 400.824 kb on + strand, within PGA1_c04130 at 400.832 kb on - strand, within PGA1_c04130 at 400.841 kb on + strand, within PGA1_c04130 at 400.851 kb on + strand, within PGA1_c04130 at 400.859 kb on - strand, within PGA1_c04130 at 400.900 kb on + strand, within PGA1_c04130 at 400.900 kb on + strand, within PGA1_c04130 at 400.908 kb on - strand, within PGA1_c04130 at 400.908 kb on - strand, within PGA1_c04130 at 400.908 kb on - strand, within PGA1_c04130 at 400.934 kb on + strand, within PGA1_c04130 at 400.934 kb on + strand, within PGA1_c04130 at 400.940 kb on + strand, within PGA1_c04130 at 401.002 kb on - strand, within PGA1_c04130 at 401.002 kb on - strand, within PGA1_c04130 at 401.005 kb on + strand, within PGA1_c04130 at 401.005 kb on + strand, within PGA1_c04130 at 401.013 kb on - strand, within PGA1_c04130 at 401.013 kb on - strand, within PGA1_c04130 at 401.115 kb on + strand, within PGA1_c04130 at 401.115 kb on + strand, within PGA1_c04130 at 401.115 kb on + strand, within PGA1_c04130 at 401.115 kb on + strand, within PGA1_c04130 at 401.116 kb on - strand, within PGA1_c04130 at 401.116 kb on - strand, within PGA1_c04130 at 401.116 kb on - strand, within PGA1_c04130 at 401.123 kb on - strand, within PGA1_c04130 at 401.159 kb on - strand, within PGA1_c04130 at 401.174 kb on - strand, within PGA1_c04130 at 401.222 kb on + strand, within PGA1_c04130 at 401.230 kb on - strand, within PGA1_c04130 at 401.316 kb on - strand, within PGA1_c04130 at 401.332 kb on - strand, within PGA1_c04130 at 401.348 kb on + strand, within PGA1_c04130 at 401.546 kb on + strand at 401.638 kb on + strand at 401.683 kb on + strand at 401.714 kb on - strand at 401.721 kb on + strand at 401.721 kb on + strand at 401.721 kb on + strand at 401.721 kb on + strand at 401.726 kb on + strand at 401.726 kb on + strand at 401.726 kb on + strand at 401.734 kb on - strand, within PGA1_c04140 at 401.816 kb on + strand, within PGA1_c04140 at 401.816 kb on + strand, within PGA1_c04140 at 401.824 kb on - strand, within PGA1_c04140 at 401.843 kb on + strand, within PGA1_c04140 at 401.843 kb on + strand, within PGA1_c04140 at 401.843 kb on + strand, within PGA1_c04140 at 401.843 kb on + strand, within PGA1_c04140 at 401.843 kb on + strand, within PGA1_c04140 at 401.851 kb on - strand, within PGA1_c04140 at 401.851 kb on - strand, within PGA1_c04140 at 401.851 kb on - strand, within PGA1_c04140 at 401.858 kb on + strand, within PGA1_c04140 at 401.885 kb on + strand, within PGA1_c04140 at 401.898 kb on + strand, within PGA1_c04140 at 402.025 kb on + strand, within PGA1_c04140 at 402.035 kb on - strand, within PGA1_c04140 at 402.165 kb on + strand, within PGA1_c04140 at 402.205 kb on - strand, within PGA1_c04140 at 402.248 kb on - strand, within PGA1_c04140 at 402.372 kb on - strand, within PGA1_c04140 at 402.374 kb on - strand, within PGA1_c04140 at 402.403 kb on + strand, within PGA1_c04140 at 402.497 kb on - strand, within PGA1_c04140 at 402.497 kb on - strand, within PGA1_c04140 at 402.499 kb on + strand, within PGA1_c04140 at 402.499 kb on + strand, within PGA1_c04140 at 402.512 kb on - strand, within PGA1_c04140 at 402.514 kb on + strand, within PGA1_c04140 at 402.514 kb on + strand, within PGA1_c04140
Per-strain Table
Position Strand Gene LocusTag Fraction D-Fructose (C) remove 399,440 + PGA1_c04120 0.24 -0.7 399,448 - PGA1_c04120 0.25 +1.3 399,513 - PGA1_c04120 0.31 +0.3 399,520 + PGA1_c04120 0.31 +0.4 399,577 - PGA1_c04120 0.36 -1.2 399,577 - PGA1_c04120 0.36 +1.0 399,650 + PGA1_c04120 0.42 -0.7 399,650 + PGA1_c04120 0.42 -2.7 399,650 + PGA1_c04120 0.42 -2.2 399,650 + PGA1_c04120 0.42 -0.4 399,650 + PGA1_c04120 0.42 +1.7 399,650 + PGA1_c04120 0.42 -2.3 399,650 + PGA1_c04120 0.42 -2.9 399,650 + PGA1_c04120 0.42 +1.3 399,656 - PGA1_c04120 0.43 -2.7 399,658 - PGA1_c04120 0.43 -0.7 399,658 - PGA1_c04120 0.43 -1.9 399,658 - PGA1_c04120 0.43 -2.5 399,658 - PGA1_c04120 0.43 -2.3 399,658 - PGA1_c04120 0.43 +1.5 399,658 - PGA1_c04120 0.43 -1.9 399,766 - PGA1_c04120 0.52 -0.2 399,828 - PGA1_c04120 0.57 -2.2 399,839 + PGA1_c04120 0.58 -1.4 399,894 + PGA1_c04120 0.63 -2.2 399,895 + PGA1_c04120 0.63 +0.6 399,902 - PGA1_c04120 0.64 +1.0 399,916 + PGA1_c04120 0.65 -1.3 399,934 + PGA1_c04120 0.66 +0.3 399,953 + PGA1_c04120 0.68 -1.2 399,961 - PGA1_c04120 0.69 -1.2 399,961 - PGA1_c04120 0.69 -0.9 399,961 - PGA1_c04120 0.69 -1.6 399,961 - PGA1_c04120 0.69 +0.5 400,051 + PGA1_c04120 0.76 +2.1 400,061 + PGA1_c04120 0.77 +0.6 400,093 - PGA1_c04120 0.80 +1.1 400,103 - PGA1_c04120 0.81 +2.1 400,103 - PGA1_c04120 0.81 -0.5 400,104 - PGA1_c04120 0.81 -1.2 400,155 + PGA1_c04120 0.85 -2.3 400,158 - PGA1_c04120 0.85 +0.1 400,222 + +0.1 400,230 - -1.9 400,233 + +2.2 400,281 + -1.8 400,307 - +0.6 400,336 - +0.1 400,354 + +1.2 400,362 - +2.3 400,362 - -0.6 400,362 - -0.9 400,400 + -0.5 400,491 + -0.2 400,499 - +0.5 400,522 + +0.7 400,522 + -0.7 400,527 + -1.2 400,540 - PGA1_c04130 0.10 -3.0 400,540 - PGA1_c04130 0.10 -0.1 400,585 - PGA1_c04130 0.14 -0.6 400,597 + PGA1_c04130 0.15 +0.3 400,600 - PGA1_c04130 0.15 +0.3 400,600 - PGA1_c04130 0.15 -2.3 400,629 - PGA1_c04130 0.17 +0.3 400,632 + PGA1_c04130 0.18 -3.4 400,677 - PGA1_c04130 0.21 -1.9 400,690 + PGA1_c04130 0.23 +0.2 400,698 - PGA1_c04130 0.23 -0.7 400,698 - PGA1_c04130 0.23 -1.2 400,743 - PGA1_c04130 0.27 +1.6 400,743 - PGA1_c04130 0.27 -0.5 400,743 - PGA1_c04130 0.27 +1.3 400,799 - PGA1_c04130 0.32 +1.7 400,800 - PGA1_c04130 0.32 +0.3 400,824 + PGA1_c04130 0.34 -0.7 400,832 - PGA1_c04130 0.34 +0.3 400,841 + PGA1_c04130 0.35 -1.0 400,851 + PGA1_c04130 0.36 -0.0 400,859 - PGA1_c04130 0.37 +1.5 400,900 + PGA1_c04130 0.40 -2.6 400,900 + PGA1_c04130 0.40 +1.5 400,908 - PGA1_c04130 0.41 +0.9 400,908 - PGA1_c04130 0.41 -2.5 400,908 - PGA1_c04130 0.41 +0.0 400,934 + PGA1_c04130 0.43 +1.2 400,934 + PGA1_c04130 0.43 -1.9 400,940 + PGA1_c04130 0.43 +0.3 401,002 - PGA1_c04130 0.49 +0.8 401,002 - PGA1_c04130 0.49 +0.5 401,005 + PGA1_c04130 0.49 -0.2 401,005 + PGA1_c04130 0.49 -2.4 401,013 - PGA1_c04130 0.49 +0.1 401,013 - PGA1_c04130 0.49 -1.5 401,115 + PGA1_c04130 0.58 -1.9 401,115 + PGA1_c04130 0.58 +0.8 401,115 + PGA1_c04130 0.58 +3.3 401,115 + PGA1_c04130 0.58 -0.1 401,116 - PGA1_c04130 0.58 +1.1 401,116 - PGA1_c04130 0.58 -1.9 401,116 - PGA1_c04130 0.58 +1.3 401,123 - PGA1_c04130 0.59 -1.2 401,159 - PGA1_c04130 0.62 +0.5 401,174 - PGA1_c04130 0.63 +2.1 401,222 + PGA1_c04130 0.67 +0.8 401,230 - PGA1_c04130 0.68 +1.4 401,316 - PGA1_c04130 0.75 -1.5 401,332 - PGA1_c04130 0.76 -0.5 401,348 + PGA1_c04130 0.77 +0.9 401,546 + -0.7 401,638 + -1.2 401,683 + -1.5 401,714 - -3.0 401,721 + -0.3 401,721 + -0.3 401,721 + -2.2 401,721 + -0.4 401,726 + +0.3 401,726 + -2.2 401,726 + -0.6 401,734 - PGA1_c04140 0.10 -0.5 401,816 + PGA1_c04140 0.18 -0.5 401,816 + PGA1_c04140 0.18 -0.5 401,824 - PGA1_c04140 0.18 -0.7 401,843 + PGA1_c04140 0.20 +0.3 401,843 + PGA1_c04140 0.20 +0.1 401,843 + PGA1_c04140 0.20 +0.6 401,843 + PGA1_c04140 0.20 -1.9 401,843 + PGA1_c04140 0.20 -0.1 401,851 - PGA1_c04140 0.21 +0.4 401,851 - PGA1_c04140 0.21 -0.7 401,851 - PGA1_c04140 0.21 -0.6 401,858 + PGA1_c04140 0.21 -1.2 401,885 + PGA1_c04140 0.24 +0.3 401,898 + PGA1_c04140 0.25 -3.2 402,025 + PGA1_c04140 0.36 -0.3 402,035 - PGA1_c04140 0.37 -2.8 402,165 + PGA1_c04140 0.48 -0.5 402,205 - PGA1_c04140 0.51 +0.7 402,248 - PGA1_c04140 0.55 -1.7 402,372 - PGA1_c04140 0.66 +1.2 402,374 - PGA1_c04140 0.66 +0.0 402,403 + PGA1_c04140 0.69 -1.3 402,497 - PGA1_c04140 0.77 +0.7 402,497 - PGA1_c04140 0.77 -0.0 402,499 + PGA1_c04140 0.77 -3.1 402,499 + PGA1_c04140 0.77 +0.3 402,512 - PGA1_c04140 0.78 -1.7 402,514 + PGA1_c04140 0.78 +2.9 402,514 + PGA1_c04140 0.78 -2.0
Or see this region's nucleotide sequence