Experiment: D-Fructose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p00310 and PGA1_262p00320 overlap by 4 nucleotides PGA1_262p00320 and PGA1_262p00330 are separated by 13 nucleotides PGA1_262p00330 and PGA1_262p00340 overlap by 4 nucleotides PGA1_262p00340 and PGA1_262p00350 overlap by 8 nucleotides
PGA1_262p00310: PGA1_262p00310 - glutathione transport system permease protein GsiC, at 35,068 to 36,009
_262p00310
PGA1_262p00320: PGA1_262p00320 - ABC transporter, inner membrane component, at 36,006 to 36,872
_262p00320
PGA1_262p00330: PGA1_262p00330 - oligopeptide ABC transporter, ATP binding protein, at 36,886 to 37,884
_262p00330
PGA1_262p00340: PGA1_262p00340 - oligopeptide ABC transporter, ATP binding protein, at 37,881 to 38,879
_262p00340
PGA1_262p00350: PGA1_262p00350 - metallopeptidase, family M24, at 38,872 to 40,674
_262p00350
Position (kb) 36
37
38 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 35.920 kb on + strand at 36.023 kb on + strand at 36.154 kb on + strand, within PGA1_262p00320 at 36.242 kb on - strand, within PGA1_262p00320 at 36.376 kb on - strand, within PGA1_262p00320 at 36.425 kb on - strand, within PGA1_262p00320 at 36.425 kb on - strand, within PGA1_262p00320 at 36.491 kb on - strand, within PGA1_262p00320 at 36.515 kb on - strand, within PGA1_262p00320 at 36.632 kb on - strand, within PGA1_262p00320 at 36.882 kb on + strand at 36.927 kb on + strand at 36.955 kb on + strand at 36.983 kb on + strand at 36.999 kb on + strand, within PGA1_262p00330 at 37.043 kb on - strand, within PGA1_262p00330 at 37.156 kb on + strand, within PGA1_262p00330 at 37.218 kb on + strand, within PGA1_262p00330 at 37.274 kb on - strand, within PGA1_262p00330 at 37.512 kb on - strand, within PGA1_262p00330 at 37.552 kb on + strand, within PGA1_262p00330 at 37.552 kb on + strand, within PGA1_262p00330 at 37.560 kb on - strand, within PGA1_262p00330 at 37.560 kb on - strand, within PGA1_262p00330 at 37.562 kb on + strand, within PGA1_262p00330 at 37.603 kb on - strand, within PGA1_262p00330 at 37.639 kb on - strand, within PGA1_262p00330 at 37.641 kb on + strand, within PGA1_262p00330 at 37.644 kb on - strand, within PGA1_262p00330 at 37.698 kb on + strand, within PGA1_262p00330 at 37.698 kb on + strand, within PGA1_262p00330 at 37.754 kb on + strand, within PGA1_262p00330 at 37.878 kb on + strand at 37.993 kb on + strand, within PGA1_262p00340 at 38.079 kb on - strand, within PGA1_262p00340 at 38.240 kb on + strand, within PGA1_262p00340 at 38.546 kb on + strand, within PGA1_262p00340 at 38.619 kb on - strand, within PGA1_262p00340 at 38.730 kb on + strand, within PGA1_262p00340 at 38.730 kb on + strand, within PGA1_262p00340 at 38.738 kb on - strand, within PGA1_262p00340
Per-strain Table
Position Strand Gene LocusTag Fraction D-Fructose (C) remove 35,920 + +2.2 36,023 + +2.0 36,154 + PGA1_262p00320 0.17 +1.4 36,242 - PGA1_262p00320 0.27 -0.3 36,376 - PGA1_262p00320 0.43 +0.2 36,425 - PGA1_262p00320 0.48 +0.7 36,425 - PGA1_262p00320 0.48 -0.1 36,491 - PGA1_262p00320 0.56 +2.4 36,515 - PGA1_262p00320 0.59 +2.0 36,632 - PGA1_262p00320 0.72 +0.7 36,882 + +1.9 36,927 + +0.9 36,955 + -1.7 36,983 + +0.6 36,999 + PGA1_262p00330 0.11 +0.4 37,043 - PGA1_262p00330 0.16 -0.9 37,156 + PGA1_262p00330 0.27 -0.3 37,218 + PGA1_262p00330 0.33 +0.4 37,274 - PGA1_262p00330 0.39 +1.6 37,512 - PGA1_262p00330 0.63 +3.8 37,552 + PGA1_262p00330 0.67 +2.2 37,552 + PGA1_262p00330 0.67 +2.4 37,560 - PGA1_262p00330 0.67 +1.2 37,560 - PGA1_262p00330 0.67 -1.1 37,562 + PGA1_262p00330 0.68 +1.5 37,603 - PGA1_262p00330 0.72 -1.9 37,639 - PGA1_262p00330 0.75 -0.9 37,641 + PGA1_262p00330 0.76 +1.8 37,644 - PGA1_262p00330 0.76 -0.1 37,698 + PGA1_262p00330 0.81 +1.5 37,698 + PGA1_262p00330 0.81 +0.7 37,754 + PGA1_262p00330 0.87 -1.1 37,878 + -1.1 37,993 + PGA1_262p00340 0.11 +1.9 38,079 - PGA1_262p00340 0.20 -2.3 38,240 + PGA1_262p00340 0.36 +1.2 38,546 + PGA1_262p00340 0.67 -0.6 38,619 - PGA1_262p00340 0.74 -0.2 38,730 + PGA1_262p00340 0.85 -0.0 38,730 + PGA1_262p00340 0.85 +1.3 38,738 - PGA1_262p00340 0.86 +0.7
Or see this region's nucleotide sequence