Experiment: D-Fructose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c02590 and PGA1_c02600 are separated by 4 nucleotides PGA1_c02600 and PGA1_c02610 overlap by 4 nucleotides PGA1_c02610 and PGA1_c02620 overlap by 1 nucleotides
PGA1_c02590: PGA1_c02590 - putative high-affinity branched-chain amino acid transport system permease protein LivH, at 243,154 to 244,029
_c02590
PGA1_c02600: PGA1_c02600 - putative high-affinity branched-chain amino acid transport system permease protein LivM, at 244,034 to 245,119
_c02600
PGA1_c02610: PGA1_c02610 - putative high-affinity branched-chain amino acid transport ATP-binding protein LivG, at 245,116 to 245,883
_c02610
PGA1_c02620: PGA1_c02620 - high-affinity branched-chain amino acid transport ATP-binding protein LivF, at 245,883 to 246,656
_c02620
Position (kb) 244
245
246 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 243.040 kb on + strand at 243.055 kb on + strand at 243.062 kb on - strand at 243.064 kb on + strand at 243.067 kb on - strand at 243.067 kb on - strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.095 kb on - strand at 243.095 kb on - strand at 243.095 kb on - strand at 243.095 kb on - strand at 243.095 kb on - strand at 243.095 kb on - strand at 243.095 kb on - strand at 243.095 kb on - strand at 243.095 kb on - strand at 243.095 kb on - strand at 243.095 kb on - strand at 243.095 kb on - strand at 243.095 kb on - strand at 243.095 kb on - strand at 243.095 kb on - strand at 243.097 kb on + strand at 243.105 kb on - strand at 243.150 kb on - strand at 243.161 kb on + strand at 243.169 kb on - strand at 243.182 kb on - strand at 243.221 kb on + strand at 243.221 kb on + strand at 243.226 kb on + strand at 243.226 kb on + strand at 243.229 kb on - strand at 243.282 kb on + strand, within PGA1_c02590 at 243.298 kb on - strand, within PGA1_c02590 at 243.299 kb on + strand, within PGA1_c02590 at 243.307 kb on - strand, within PGA1_c02590 at 243.377 kb on + strand, within PGA1_c02590 at 243.397 kb on + strand, within PGA1_c02590 at 243.453 kb on - strand, within PGA1_c02590 at 243.453 kb on - strand, within PGA1_c02590 at 243.508 kb on - strand, within PGA1_c02590 at 243.604 kb on + strand, within PGA1_c02590 at 243.686 kb on - strand, within PGA1_c02590 at 243.715 kb on + strand, within PGA1_c02590 at 243.724 kb on + strand, within PGA1_c02590 at 243.724 kb on + strand, within PGA1_c02590 at 243.813 kb on + strand, within PGA1_c02590 at 243.819 kb on + strand, within PGA1_c02590 at 243.826 kb on + strand, within PGA1_c02590 at 243.849 kb on - strand, within PGA1_c02590 at 243.864 kb on + strand, within PGA1_c02590 at 243.901 kb on + strand, within PGA1_c02590 at 243.953 kb on + strand at 243.973 kb on + strand at 243.989 kb on + strand at 243.989 kb on + strand at 244.005 kb on - strand at 244.023 kb on + strand at 244.023 kb on + strand at 244.023 kb on + strand at 244.023 kb on + strand at 244.031 kb on - strand at 244.089 kb on + strand at 244.102 kb on + strand at 244.110 kb on - strand at 244.164 kb on - strand, within PGA1_c02600 at 244.164 kb on - strand, within PGA1_c02600 at 244.181 kb on + strand, within PGA1_c02600 at 244.181 kb on + strand, within PGA1_c02600 at 244.181 kb on + strand, within PGA1_c02600 at 244.181 kb on + strand, within PGA1_c02600 at 244.181 kb on + strand, within PGA1_c02600 at 244.189 kb on - strand, within PGA1_c02600 at 244.211 kb on - strand, within PGA1_c02600 at 244.240 kb on + strand, within PGA1_c02600 at 244.240 kb on + strand, within PGA1_c02600 at 244.240 kb on + strand, within PGA1_c02600 at 244.240 kb on + strand, within PGA1_c02600 at 244.240 kb on + strand, within PGA1_c02600 at 244.240 kb on + strand, within PGA1_c02600 at 244.248 kb on - strand, within PGA1_c02600 at 244.251 kb on + strand, within PGA1_c02600 at 244.282 kb on + strand, within PGA1_c02600 at 244.295 kb on - strand, within PGA1_c02600 at 244.305 kb on - strand, within PGA1_c02600 at 244.306 kb on + strand, within PGA1_c02600 at 244.306 kb on + strand, within PGA1_c02600 at 244.322 kb on - strand, within PGA1_c02600 at 244.398 kb on + strand, within PGA1_c02600 at 244.398 kb on + strand, within PGA1_c02600 at 244.398 kb on + strand, within PGA1_c02600 at 244.398 kb on + strand, within PGA1_c02600 at 244.398 kb on + strand, within PGA1_c02600 at 244.398 kb on + strand, within PGA1_c02600 at 244.398 kb on + strand, within PGA1_c02600 at 244.398 kb on + strand, within PGA1_c02600 at 244.398 kb on + strand, within PGA1_c02600 at 244.398 kb on + strand, within PGA1_c02600 at 244.398 kb on + strand, within PGA1_c02600 at 244.398 kb on + strand, within PGA1_c02600 at 244.398 kb on + strand, within PGA1_c02600 at 244.398 kb on + strand, within PGA1_c02600 at 244.398 kb on + strand, within PGA1_c02600 at 244.401 kb on - strand, within PGA1_c02600 at 244.406 kb on - strand, within PGA1_c02600 at 244.406 kb on - strand, within PGA1_c02600 at 244.406 kb on - strand, within PGA1_c02600 at 244.406 kb on - strand, within PGA1_c02600 at 244.406 kb on - strand, within PGA1_c02600 at 244.419 kb on + strand, within PGA1_c02600 at 244.465 kb on + strand, within PGA1_c02600 at 244.465 kb on + strand, within PGA1_c02600 at 244.473 kb on - strand, within PGA1_c02600 at 244.473 kb on - strand, within PGA1_c02600 at 244.513 kb on - strand, within PGA1_c02600 at 244.544 kb on - strand, within PGA1_c02600 at 244.567 kb on + strand, within PGA1_c02600 at 244.577 kb on + strand, within PGA1_c02600 at 244.577 kb on + strand, within PGA1_c02600 at 244.577 kb on + strand, within PGA1_c02600 at 244.619 kb on + strand, within PGA1_c02600 at 244.657 kb on + strand, within PGA1_c02600 at 244.688 kb on + strand, within PGA1_c02600 at 244.725 kb on - strand, within PGA1_c02600 at 244.733 kb on + strand, within PGA1_c02600 at 244.737 kb on + strand, within PGA1_c02600 at 244.737 kb on + strand, within PGA1_c02600 at 244.737 kb on + strand, within PGA1_c02600 at 244.784 kb on + strand, within PGA1_c02600 at 244.803 kb on + strand, within PGA1_c02600 at 244.816 kb on + strand, within PGA1_c02600 at 244.913 kb on + strand, within PGA1_c02600 at 244.919 kb on + strand, within PGA1_c02600 at 244.919 kb on + strand, within PGA1_c02600 at 244.919 kb on + strand, within PGA1_c02600 at 244.924 kb on + strand, within PGA1_c02600 at 244.924 kb on + strand, within PGA1_c02600 at 244.927 kb on - strand, within PGA1_c02600 at 244.982 kb on - strand, within PGA1_c02600 at 244.982 kb on - strand, within PGA1_c02600 at 245.040 kb on + strand at 245.048 kb on - strand at 245.048 kb on - strand at 245.048 kb on - strand at 245.048 kb on - strand at 245.050 kb on + strand at 245.058 kb on - strand at 245.058 kb on - strand at 245.110 kb on + strand at 245.110 kb on + strand at 245.113 kb on + strand at 245.115 kb on + strand at 245.118 kb on - strand at 245.118 kb on - strand at 245.118 kb on - strand at 245.118 kb on - strand at 245.118 kb on - strand at 245.124 kb on + strand at 245.127 kb on - strand at 245.132 kb on - strand at 245.205 kb on + strand, within PGA1_c02610 at 245.208 kb on - strand, within PGA1_c02610 at 245.213 kb on - strand, within PGA1_c02610 at 245.227 kb on + strand, within PGA1_c02610 at 245.230 kb on - strand, within PGA1_c02610 at 245.289 kb on - strand, within PGA1_c02610 at 245.322 kb on + strand, within PGA1_c02610 at 245.322 kb on + strand, within PGA1_c02610 at 245.322 kb on + strand, within PGA1_c02610 at 245.322 kb on + strand, within PGA1_c02610 at 245.330 kb on - strand, within PGA1_c02610 at 245.330 kb on - strand, within PGA1_c02610 at 245.330 kb on - strand, within PGA1_c02610 at 245.373 kb on - strand, within PGA1_c02610 at 245.398 kb on + strand, within PGA1_c02610 at 245.429 kb on + strand, within PGA1_c02610 at 245.448 kb on + strand, within PGA1_c02610 at 245.535 kb on + strand, within PGA1_c02610 at 245.549 kb on - strand, within PGA1_c02610 at 245.560 kb on - strand, within PGA1_c02610 at 245.571 kb on + strand, within PGA1_c02610 at 245.571 kb on + strand, within PGA1_c02610 at 245.571 kb on + strand, within PGA1_c02610 at 245.579 kb on - strand, within PGA1_c02610 at 245.579 kb on - strand, within PGA1_c02610 at 245.581 kb on - strand, within PGA1_c02610 at 245.613 kb on + strand, within PGA1_c02610 at 245.646 kb on + strand, within PGA1_c02610 at 245.737 kb on + strand, within PGA1_c02610 at 245.760 kb on - strand, within PGA1_c02610 at 245.790 kb on + strand, within PGA1_c02610 at 245.835 kb on + strand at 245.835 kb on + strand at 245.835 kb on + strand at 245.843 kb on - strand at 245.882 kb on + strand at 245.886 kb on + strand at 245.902 kb on - strand at 245.937 kb on - strand at 245.937 kb on - strand at 245.964 kb on + strand, within PGA1_c02620 at 245.964 kb on + strand, within PGA1_c02620 at 245.964 kb on + strand, within PGA1_c02620 at 245.972 kb on - strand, within PGA1_c02620 at 245.978 kb on + strand, within PGA1_c02620 at 246.013 kb on + strand, within PGA1_c02620 at 246.033 kb on + strand, within PGA1_c02620 at 246.086 kb on + strand, within PGA1_c02620 at 246.107 kb on - strand, within PGA1_c02620
Per-strain Table
Position Strand Gene LocusTag Fraction D-Fructose (C) remove 243,040 + +1.2 243,055 + +0.4 243,062 - +1.6 243,064 + -1.1 243,067 - +1.2 243,067 - -2.2 243,087 + +1.9 243,087 + +1.1 243,087 + -1.5 243,087 + +0.6 243,087 + -2.8 243,087 + +1.4 243,087 + +0.4 243,087 + -1.5 243,087 + +0.7 243,087 + +1.0 243,087 + +1.5 243,087 + +1.6 243,087 + -2.0 243,087 + +0.9 243,087 + -0.9 243,087 + +0.9 243,087 + +0.3 243,087 + +0.5 243,087 + -0.2 243,087 + +0.4 243,087 + +0.8 243,087 + -2.5 243,087 + +1.4 243,087 + -1.7 243,087 + -0.9 243,087 + -3.0 243,087 + -1.9 243,087 + -1.8 243,087 + -0.9 243,087 + +0.0 243,087 + -0.7 243,087 + +1.5 243,087 + -1.9 243,087 + -2.2 243,095 - +0.4 243,095 - +0.5 243,095 - -1.1 243,095 - -0.7 243,095 - -3.0 243,095 - -3.2 243,095 - -2.8 243,095 - +0.3 243,095 - -0.8 243,095 - +1.9 243,095 - -1.2 243,095 - +1.0 243,095 - -0.7 243,095 - -1.5 243,095 - -0.4 243,097 + +3.0 243,105 - -0.9 243,150 - +0.6 243,161 + +1.8 243,169 - -2.5 243,182 - -0.4 243,221 + -1.7 243,221 + +1.9 243,226 + +1.3 243,226 + -0.8 243,229 - +2.1 243,282 + PGA1_c02590 0.15 -0.1 243,298 - PGA1_c02590 0.16 -0.4 243,299 + PGA1_c02590 0.17 -0.1 243,307 - PGA1_c02590 0.17 -0.0 243,377 + PGA1_c02590 0.25 -0.7 243,397 + PGA1_c02590 0.28 -0.9 243,453 - PGA1_c02590 0.34 -1.5 243,453 - PGA1_c02590 0.34 +1.6 243,508 - PGA1_c02590 0.40 +1.5 243,604 + PGA1_c02590 0.51 +0.3 243,686 - PGA1_c02590 0.61 -1.5 243,715 + PGA1_c02590 0.64 -0.7 243,724 + PGA1_c02590 0.65 +1.2 243,724 + PGA1_c02590 0.65 -1.0 243,813 + PGA1_c02590 0.75 -0.9 243,819 + PGA1_c02590 0.76 -0.9 243,826 + PGA1_c02590 0.77 +0.1 243,849 - PGA1_c02590 0.79 +1.2 243,864 + PGA1_c02590 0.81 -0.3 243,901 + PGA1_c02590 0.85 +0.1 243,953 + -1.1 243,973 + -0.5 243,989 + +0.2 243,989 + +1.0 244,005 - -0.2 244,023 + +1.6 244,023 + -0.4 244,023 + +1.3 244,023 + +0.5 244,031 - +1.4 244,089 + +0.0 244,102 + -0.5 244,110 - +0.6 244,164 - PGA1_c02600 0.12 -2.8 244,164 - PGA1_c02600 0.12 -0.9 244,181 + PGA1_c02600 0.14 +1.4 244,181 + PGA1_c02600 0.14 -1.5 244,181 + PGA1_c02600 0.14 -1.5 244,181 + PGA1_c02600 0.14 +0.4 244,181 + PGA1_c02600 0.14 +1.4 244,189 - PGA1_c02600 0.14 +1.4 244,211 - PGA1_c02600 0.16 +0.7 244,240 + PGA1_c02600 0.19 -2.4 244,240 + PGA1_c02600 0.19 -3.2 244,240 + PGA1_c02600 0.19 +0.5 244,240 + PGA1_c02600 0.19 +1.3 244,240 + PGA1_c02600 0.19 -2.5 244,240 + PGA1_c02600 0.19 +0.3 244,248 - PGA1_c02600 0.20 +0.2 244,251 + PGA1_c02600 0.20 +0.5 244,282 + PGA1_c02600 0.23 +1.9 244,295 - PGA1_c02600 0.24 +0.4 244,305 - PGA1_c02600 0.25 -1.2 244,306 + PGA1_c02600 0.25 -2.1 244,306 + PGA1_c02600 0.25 +1.5 244,322 - PGA1_c02600 0.27 -1.4 244,398 + PGA1_c02600 0.34 +2.5 244,398 + PGA1_c02600 0.34 +1.6 244,398 + PGA1_c02600 0.34 +0.3 244,398 + PGA1_c02600 0.34 -2.2 244,398 + PGA1_c02600 0.34 -0.2 244,398 + PGA1_c02600 0.34 -2.0 244,398 + PGA1_c02600 0.34 -1.9 244,398 + PGA1_c02600 0.34 -1.3 244,398 + PGA1_c02600 0.34 -1.8 244,398 + PGA1_c02600 0.34 +2.5 244,398 + PGA1_c02600 0.34 +0.6 244,398 + PGA1_c02600 0.34 -0.4 244,398 + PGA1_c02600 0.34 +0.9 244,398 + PGA1_c02600 0.34 +1.0 244,398 + PGA1_c02600 0.34 +0.6 244,401 - PGA1_c02600 0.34 -3.9 244,406 - PGA1_c02600 0.34 -1.0 244,406 - PGA1_c02600 0.34 +1.6 244,406 - PGA1_c02600 0.34 +2.4 244,406 - PGA1_c02600 0.34 -2.5 244,406 - PGA1_c02600 0.34 +0.3 244,419 + PGA1_c02600 0.35 +0.2 244,465 + PGA1_c02600 0.40 +0.1 244,465 + PGA1_c02600 0.40 -1.4 244,473 - PGA1_c02600 0.40 -2.0 244,473 - PGA1_c02600 0.40 -0.9 244,513 - PGA1_c02600 0.44 +1.1 244,544 - PGA1_c02600 0.47 +1.2 244,567 + PGA1_c02600 0.49 -1.9 244,577 + PGA1_c02600 0.50 -3.4 244,577 + PGA1_c02600 0.50 -2.0 244,577 + PGA1_c02600 0.50 +1.6 244,619 + PGA1_c02600 0.54 -0.0 244,657 + PGA1_c02600 0.57 -1.3 244,688 + PGA1_c02600 0.60 +0.2 244,725 - PGA1_c02600 0.64 +1.7 244,733 + PGA1_c02600 0.64 +0.6 244,737 + PGA1_c02600 0.65 -1.7 244,737 + PGA1_c02600 0.65 -0.0 244,737 + PGA1_c02600 0.65 +0.3 244,784 + PGA1_c02600 0.69 +4.4 244,803 + PGA1_c02600 0.71 +1.0 244,816 + PGA1_c02600 0.72 -0.2 244,913 + PGA1_c02600 0.81 -0.4 244,919 + PGA1_c02600 0.81 -0.0 244,919 + PGA1_c02600 0.81 +1.1 244,919 + PGA1_c02600 0.81 +0.8 244,924 + PGA1_c02600 0.82 +0.5 244,924 + PGA1_c02600 0.82 +2.3 244,927 - PGA1_c02600 0.82 -2.9 244,982 - PGA1_c02600 0.87 -2.0 244,982 - PGA1_c02600 0.87 -2.7 245,040 + +1.2 245,048 - +1.8 245,048 - +0.9 245,048 - +1.2 245,048 - -0.1 245,050 + +0.4 245,058 - -2.6 245,058 - +0.5 245,110 + +0.3 245,110 + -0.5 245,113 + -1.1 245,115 + +1.9 245,118 - -0.4 245,118 - -0.3 245,118 - -1.1 245,118 - -0.4 245,118 - +3.4 245,124 + -2.3 245,127 - +0.9 245,132 - -0.9 245,205 + PGA1_c02610 0.12 -2.2 245,208 - PGA1_c02610 0.12 -0.4 245,213 - PGA1_c02610 0.13 +0.2 245,227 + PGA1_c02610 0.14 -1.7 245,230 - PGA1_c02610 0.15 -0.1 245,289 - PGA1_c02610 0.23 +1.3 245,322 + PGA1_c02610 0.27 +0.1 245,322 + PGA1_c02610 0.27 -2.7 245,322 + PGA1_c02610 0.27 -2.3 245,322 + PGA1_c02610 0.27 +1.0 245,330 - PGA1_c02610 0.28 -0.3 245,330 - PGA1_c02610 0.28 -1.1 245,330 - PGA1_c02610 0.28 -0.2 245,373 - PGA1_c02610 0.33 +1.1 245,398 + PGA1_c02610 0.37 +0.6 245,429 + PGA1_c02610 0.41 +1.1 245,448 + PGA1_c02610 0.43 -1.8 245,535 + PGA1_c02610 0.55 +0.3 245,549 - PGA1_c02610 0.56 -1.7 245,560 - PGA1_c02610 0.58 +0.9 245,571 + PGA1_c02610 0.59 -1.7 245,571 + PGA1_c02610 0.59 +0.8 245,571 + PGA1_c02610 0.59 -1.3 245,579 - PGA1_c02610 0.60 -3.8 245,579 - PGA1_c02610 0.60 -0.4 245,581 - PGA1_c02610 0.61 -0.7 245,613 + PGA1_c02610 0.65 +0.9 245,646 + PGA1_c02610 0.69 -0.7 245,737 + PGA1_c02610 0.81 -2.1 245,760 - PGA1_c02610 0.84 -2.1 245,790 + PGA1_c02610 0.88 +0.9 245,835 + -1.4 245,835 + +0.6 245,835 + -0.4 245,843 - -2.6 245,882 + +0.3 245,886 + -0.1 245,902 - -0.4 245,937 - +1.4 245,937 - -1.9 245,964 + PGA1_c02620 0.10 -0.9 245,964 + PGA1_c02620 0.10 -1.5 245,964 + PGA1_c02620 0.10 -2.1 245,972 - PGA1_c02620 0.11 +3.9 245,978 + PGA1_c02620 0.12 +3.0 246,013 + PGA1_c02620 0.17 +3.5 246,033 + PGA1_c02620 0.19 +2.9 246,086 + PGA1_c02620 0.26 +0.7 246,107 - PGA1_c02620 0.29 -0.3
Or see this region's nucleotide sequence