Experiment: D-Fructose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c17620 and PGA1_c17630 are separated by 91 nucleotides PGA1_c17630 and PGA1_c17640 are separated by 55 nucleotides PGA1_c17640 and PGA1_c17650 are separated by 45 nucleotides PGA1_c17650 and PGA1_c17660 are separated by 516 nucleotides
PGA1_c17620: PGA1_c17620 - Uncharacterized conserved protein, at 1,847,008 to 1,848,198
_c17620
PGA1_c17630: PGA1_c17630 - hypothetical protein, at 1,848,290 to 1,848,979
_c17630
PGA1_c17640: PGA1_c17640 - hypothetical protein, at 1,849,035 to 1,849,388
_c17640
PGA1_c17650: PGA1_c17650 - hypothetical protein, at 1,849,434 to 1,849,712
_c17650
PGA1_c17660: PGA1_c17660 - hypothetical protein, at 1,850,229 to 1,850,417
_c17660
Position (kb)
1849
1850 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 1848.083 kb on + strand at 1848.083 kb on + strand at 1848.091 kb on - strand at 1848.116 kb on + strand at 1848.134 kb on - strand at 1848.218 kb on + strand at 1848.304 kb on - strand at 1848.304 kb on - strand at 1848.396 kb on + strand, within PGA1_c17630 at 1848.396 kb on + strand, within PGA1_c17630 at 1848.401 kb on - strand, within PGA1_c17630 at 1848.403 kb on + strand, within PGA1_c17630 at 1848.407 kb on + strand, within PGA1_c17630 at 1848.411 kb on - strand, within PGA1_c17630 at 1848.415 kb on + strand, within PGA1_c17630 at 1848.415 kb on + strand, within PGA1_c17630 at 1848.423 kb on - strand, within PGA1_c17630 at 1848.455 kb on - strand, within PGA1_c17630 at 1848.495 kb on + strand, within PGA1_c17630 at 1848.495 kb on + strand, within PGA1_c17630 at 1848.500 kb on + strand at 1848.514 kb on - strand, within PGA1_c17630 at 1848.538 kb on + strand, within PGA1_c17630 at 1848.642 kb on + strand, within PGA1_c17630 at 1848.650 kb on - strand, within PGA1_c17630 at 1848.652 kb on + strand, within PGA1_c17630 at 1848.652 kb on + strand, within PGA1_c17630 at 1848.659 kb on + strand, within PGA1_c17630 at 1848.707 kb on - strand, within PGA1_c17630 at 1848.707 kb on - strand, within PGA1_c17630 at 1848.707 kb on - strand, within PGA1_c17630 at 1848.707 kb on - strand, within PGA1_c17630 at 1848.726 kb on - strand, within PGA1_c17630 at 1848.752 kb on - strand, within PGA1_c17630 at 1848.784 kb on + strand, within PGA1_c17630 at 1848.819 kb on - strand, within PGA1_c17630 at 1848.929 kb on + strand at 1848.929 kb on + strand at 1848.937 kb on - strand at 1849.058 kb on + strand at 1849.067 kb on - strand at 1849.067 kb on - strand at 1849.077 kb on - strand, within PGA1_c17640 at 1849.215 kb on + strand, within PGA1_c17640 at 1849.235 kb on - strand, within PGA1_c17640 at 1849.288 kb on + strand, within PGA1_c17640 at 1849.297 kb on - strand, within PGA1_c17640 at 1849.341 kb on + strand, within PGA1_c17640 at 1849.341 kb on + strand, within PGA1_c17640 at 1849.349 kb on - strand, within PGA1_c17640 at 1849.349 kb on - strand, within PGA1_c17640 at 1849.349 kb on - strand, within PGA1_c17640 at 1849.349 kb on - strand, within PGA1_c17640 at 1849.349 kb on - strand, within PGA1_c17640 at 1849.349 kb on - strand, within PGA1_c17640 at 1849.349 kb on - strand, within PGA1_c17640 at 1849.349 kb on - strand, within PGA1_c17640 at 1849.371 kb on - strand at 1849.381 kb on - strand at 1849.381 kb on - strand at 1849.466 kb on - strand, within PGA1_c17650 at 1849.503 kb on + strand, within PGA1_c17650 at 1849.507 kb on - strand, within PGA1_c17650 at 1849.511 kb on - strand, within PGA1_c17650 at 1849.511 kb on - strand, within PGA1_c17650 at 1849.535 kb on - strand, within PGA1_c17650 at 1849.565 kb on + strand, within PGA1_c17650 at 1849.565 kb on + strand, within PGA1_c17650 at 1849.615 kb on - strand, within PGA1_c17650 at 1849.683 kb on + strand, within PGA1_c17650 at 1849.683 kb on + strand, within PGA1_c17650 at 1849.687 kb on - strand at 1849.687 kb on - strand at 1849.690 kb on + strand at 1849.720 kb on - strand at 1849.766 kb on - strand at 1849.903 kb on + strand at 1849.919 kb on - strand at 1849.936 kb on + strand at 1849.936 kb on + strand at 1849.936 kb on + strand at 1849.936 kb on + strand at 1849.936 kb on + strand at 1849.936 kb on + strand at 1849.936 kb on + strand at 1849.936 kb on + strand at 1849.944 kb on - strand at 1849.944 kb on - strand at 1849.944 kb on - strand at 1849.944 kb on - strand at 1849.972 kb on + strand at 1850.032 kb on + strand at 1850.040 kb on - strand at 1850.055 kb on + strand at 1850.058 kb on - strand at 1850.060 kb on + strand at 1850.063 kb on - strand at 1850.074 kb on + strand at 1850.111 kb on - strand at 1850.159 kb on - strand at 1850.254 kb on + strand, within PGA1_c17660 at 1850.262 kb on - strand, within PGA1_c17660 at 1850.278 kb on - strand, within PGA1_c17660 at 1850.278 kb on - strand, within PGA1_c17660 at 1850.282 kb on - strand, within PGA1_c17660 at 1850.297 kb on + strand, within PGA1_c17660
Per-strain Table
Position Strand Gene LocusTag Fraction D-Fructose (C) remove 1,848,083 + +1.0 1,848,083 + +2.8 1,848,091 - +1.9 1,848,116 + +0.6 1,848,134 - +2.6 1,848,218 + -1.5 1,848,304 - +0.3 1,848,304 - +2.9 1,848,396 + PGA1_c17630 0.15 +3.1 1,848,396 + PGA1_c17630 0.15 -0.3 1,848,401 - PGA1_c17630 0.16 +0.2 1,848,403 + PGA1_c17630 0.16 -1.0 1,848,407 + PGA1_c17630 0.17 -0.7 1,848,411 - PGA1_c17630 0.18 +1.5 1,848,415 + PGA1_c17630 0.18 -1.9 1,848,415 + PGA1_c17630 0.18 +3.9 1,848,423 - PGA1_c17630 0.19 +1.3 1,848,455 - PGA1_c17630 0.24 +1.3 1,848,495 + PGA1_c17630 0.30 +0.9 1,848,495 + PGA1_c17630 0.30 -1.3 1,848,500 + -0.3 1,848,514 - PGA1_c17630 0.32 +0.9 1,848,538 + PGA1_c17630 0.36 +0.6 1,848,642 + PGA1_c17630 0.51 +1.6 1,848,650 - PGA1_c17630 0.52 -2.1 1,848,652 + PGA1_c17630 0.52 +1.8 1,848,652 + PGA1_c17630 0.52 -1.3 1,848,659 + PGA1_c17630 0.53 +1.3 1,848,707 - PGA1_c17630 0.60 +3.8 1,848,707 - PGA1_c17630 0.60 +0.3 1,848,707 - PGA1_c17630 0.60 -0.3 1,848,707 - PGA1_c17630 0.60 -0.0 1,848,726 - PGA1_c17630 0.63 -2.4 1,848,752 - PGA1_c17630 0.67 +0.8 1,848,784 + PGA1_c17630 0.72 +2.6 1,848,819 - PGA1_c17630 0.77 +1.9 1,848,929 + +0.3 1,848,929 + +0.6 1,848,937 - -0.3 1,849,058 + +1.9 1,849,067 - -1.7 1,849,067 - -1.5 1,849,077 - PGA1_c17640 0.12 +1.2 1,849,215 + PGA1_c17640 0.51 +2.0 1,849,235 - PGA1_c17640 0.56 +2.5 1,849,288 + PGA1_c17640 0.71 +1.5 1,849,297 - PGA1_c17640 0.74 +1.0 1,849,341 + PGA1_c17640 0.86 +0.5 1,849,341 + PGA1_c17640 0.86 +1.5 1,849,349 - PGA1_c17640 0.89 -0.7 1,849,349 - PGA1_c17640 0.89 +1.9 1,849,349 - PGA1_c17640 0.89 +1.6 1,849,349 - PGA1_c17640 0.89 -0.7 1,849,349 - PGA1_c17640 0.89 -1.9 1,849,349 - PGA1_c17640 0.89 -1.7 1,849,349 - PGA1_c17640 0.89 +3.1 1,849,349 - PGA1_c17640 0.89 -2.3 1,849,371 - +1.7 1,849,381 - +1.2 1,849,381 - -0.3 1,849,466 - PGA1_c17650 0.11 +1.3 1,849,503 + PGA1_c17650 0.25 +0.6 1,849,507 - PGA1_c17650 0.26 +0.3 1,849,511 - PGA1_c17650 0.28 +2.9 1,849,511 - PGA1_c17650 0.28 +2.5 1,849,535 - PGA1_c17650 0.36 +0.6 1,849,565 + PGA1_c17650 0.47 -1.0 1,849,565 + PGA1_c17650 0.47 +1.3 1,849,615 - PGA1_c17650 0.65 +1.9 1,849,683 + PGA1_c17650 0.89 -1.7 1,849,683 + PGA1_c17650 0.89 +0.3 1,849,687 - -0.3 1,849,687 - +0.3 1,849,690 + -0.3 1,849,720 - -1.7 1,849,766 - -1.5 1,849,903 + +1.8 1,849,919 - -0.3 1,849,936 + -0.3 1,849,936 + +2.1 1,849,936 + -0.7 1,849,936 + -1.0 1,849,936 + +2.3 1,849,936 + +1.1 1,849,936 + +1.5 1,849,936 + -2.7 1,849,944 - +1.3 1,849,944 - -0.3 1,849,944 - +2.1 1,849,944 - -0.8 1,849,972 + +2.9 1,850,032 + +0.9 1,850,040 - +3.3 1,850,055 + -1.3 1,850,058 - +1.7 1,850,060 + -0.0 1,850,063 - -1.4 1,850,074 + -0.3 1,850,111 - -0.3 1,850,159 - +0.7 1,850,254 + PGA1_c17660 0.13 -1.9 1,850,262 - PGA1_c17660 0.17 +1.3 1,850,278 - PGA1_c17660 0.26 -1.0 1,850,278 - PGA1_c17660 0.26 +1.6 1,850,282 - PGA1_c17660 0.28 +2.0 1,850,297 + PGA1_c17660 0.36 +0.3
Or see this region's nucleotide sequence