Strain Fitness in Shewanella amazonensis SB2B around Sama_2989

Experiment: Putrescine (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Putrescine (N)
3,558,987	+				-2.5
3,558,988	-				+0.4
3,558,988	-				-0.7
3,558,988	-				-0.6
3,558,988	-				-0.6
3,558,988	-				+0.7
3,558,994	+				+0.3
3,559,001	-				+0.2
3,559,018	-				-0.7
3,559,022	-				-0.6
3,559,026	+				-1.3
3,559,115	-				-1.1
3,559,115	-				+0.9
3,559,265	+		Sama_2988	0.29	-0.7
3,559,265	+		Sama_2988	0.29	-0.1
3,559,266	-		Sama_2988	0.29	+1.7
3,559,329	+		Sama_2988	0.39	-1.4
3,559,330	-		Sama_2988	0.39	+2.2
3,559,458	+		Sama_2988	0.60	-0.5
3,559,458	+		Sama_2988	0.60	+0.2
3,559,458	+		Sama_2988	0.60	+0.5
3,559,459	-		Sama_2988	0.60	-1.5
3,559,459	-		Sama_2988	0.60	-1.1
3,559,565	+		Sama_2988	0.77	+0.9
3,559,565	+		Sama_2988	0.77	+0.8
3,559,565	+		Sama_2988	0.77	-1.0
3,559,565	+		Sama_2988	0.77	-1.7
3,559,566	-		Sama_2988	0.77	+0.8
3,559,570	+		Sama_2988	0.78	-0.1
3,559,570	+		Sama_2988	0.78	+0.5
3,559,571	-		Sama_2988	0.78	+0.9
3,559,598	+		Sama_2988	0.82	-0.4
3,559,598	+		Sama_2988	0.82	+0.6
3,559,599	-		Sama_2988	0.82	-2.1
3,559,599	-		Sama_2988	0.82	-0.2
3,559,599	-		Sama_2988	0.82	+1.2
3,559,627	-		Sama_2988	0.87	-1.4
3,559,641	-		Sama_2988	0.89	-0.6
3,559,656	+				+0.1
3,559,656	+				+2.0
3,559,656	+				-0.1
3,559,656	+				+0.7
3,559,657	-				-0.0
3,559,657	-				-1.1
3,559,657	-				-0.8
3,559,657	-				-0.1
3,559,678	+				+0.3
3,559,678	+				+0.9
3,559,678	+				+0.4
3,559,679	-				-0.5
3,559,679	-				-1.2
3,559,679	-				+0.5
3,559,687	-				-0.1
3,559,719	+				+0.4
3,559,719	+				+1.0
3,559,720	-				+1.0
3,559,735	-				+0.5
3,559,735	-				-0.4
3,559,735	-				+0.1
3,559,735	-				+0.3
3,559,735	-				-2.3
3,559,756	+				-0.8
3,559,756	+				-1.9
3,559,756	+				-1.3
3,559,756	+				-1.0
3,559,757	-				-0.6
3,559,764	+				+0.3
3,559,843	+				+0.1
3,559,843	+				+0.2
3,559,843	+				+0.3
3,559,843	+				+0.6
3,559,844	-				-0.4
3,559,844	-				-1.5
3,559,844	-				-2.8
3,559,847	-				+2.0
3,559,876	+				-0.4
3,559,942	-				+1.2
3,559,942	-				+0.4
3,559,951	+				+0.2
3,559,952	-				-0.3
3,559,965	+				+0.1
3,559,970	-				+0.2
3,559,990	+				+1.1
3,559,990	+				-0.4
3,559,990	+				+1.6
3,559,991	-				-0.3
3,560,019	+				+0.9
3,560,020	-				+0.4
3,560,020	-				+1.4
3,560,025	+				-1.6
3,560,025	+				+0.9
3,560,026	-				-1.3
3,560,142	-				+0.3
3,560,142	-				+0.6
3,560,269	+		Sama_2989	0.16	+2.1
3,560,270	-		Sama_2989	0.16	+0.7
3,560,270	-		Sama_2989	0.16	+1.1
3,560,270	-		Sama_2989	0.16	-0.4
3,560,292	+		Sama_2989	0.18	-1.4
3,560,315	+		Sama_2989	0.19	+1.1
3,560,315	+		Sama_2989	0.19	+0.8
3,560,315	+		Sama_2989	0.19	-1.1
3,560,316	-		Sama_2989	0.19	+0.9
3,560,385	+		Sama_2989	0.23	-0.1
3,560,385	+		Sama_2989	0.23	-0.6
3,560,386	-		Sama_2989	0.23	+1.5
3,560,386	-		Sama_2989	0.23	-2.2
3,560,386	-		Sama_2989	0.23	-0.2
3,560,386	-		Sama_2989	0.23	-1.0
3,560,386	-		Sama_2989	0.23	+0.9
3,560,430	+		Sama_2989	0.26	-1.9
3,560,431	-		Sama_2989	0.26	+0.9
3,560,431	-		Sama_2989	0.26	-1.5
3,560,432	+		Sama_2989	0.26	-0.9
3,560,432	+		Sama_2989	0.26	-0.5
3,560,432	+		Sama_2989	0.26	+0.1
3,560,432	+		Sama_2989	0.26	-0.4
3,560,432	+		Sama_2989	0.26	-0.1
3,560,432	+		Sama_2989	0.26	+0.1
3,560,432	+		Sama_2989	0.26	+0.3
3,560,432	+		Sama_2989	0.26	-0.1
3,560,432	+		Sama_2989	0.26	-1.1
3,560,432	+		Sama_2989	0.26	-1.2
3,560,433	-		Sama_2989	0.26	-0.7
3,560,433	-		Sama_2989	0.26	-0.4
3,560,433	-		Sama_2989	0.26	-1.5
3,560,433	-		Sama_2989	0.26	+0.1
3,560,471	+		Sama_2989	0.28	-0.7
3,560,471	+		Sama_2989	0.28	+0.0
3,560,472	-		Sama_2989	0.28	+1.8
3,560,472	-		Sama_2989	0.28	-1.3
3,560,472	-		Sama_2989	0.28	+0.5
3,560,472	-		Sama_2989	0.28	-1.0
3,560,504	+		Sama_2989	0.30	-0.7
3,560,504	+		Sama_2989	0.30	-2.9
3,560,505	-		Sama_2989	0.30	-1.3
3,560,505	-		Sama_2989	0.30	+0.2
3,560,505	-		Sama_2989	0.30	-0.2
3,560,519	+		Sama_2989	0.31	+0.4
3,560,519	+		Sama_2989	0.31	-2.2
3,560,520	-		Sama_2989	0.31	+0.7
3,560,560	+		Sama_2989	0.33	-1.4
3,560,564	+		Sama_2989	0.33	+0.3
3,560,564	+		Sama_2989	0.33	+0.8
3,560,564	+		Sama_2989	0.33	-1.5
3,560,564	+		Sama_2989	0.33	+0.0
3,560,564	+		Sama_2989	0.33	-2.1
3,560,564	+		Sama_2989	0.33	-1.3
3,560,565	-		Sama_2989	0.33	-0.5
3,560,565	-		Sama_2989	0.33	-1.0
3,560,565	-		Sama_2989	0.33	+2.1
3,560,607	-		Sama_2989	0.36	-1.3
3,560,619	+		Sama_2989	0.37	+0.0
3,560,620	-		Sama_2989	0.37	-0.3
3,560,620	-		Sama_2989	0.37	+1.0
3,560,621	+		Sama_2989	0.37	-0.3
3,560,622	-		Sama_2989	0.37	+0.6
3,560,654	+		Sama_2989	0.39	+0.4
3,560,654	+		Sama_2989	0.39	-1.8
3,560,654	+		Sama_2989	0.39	-1.4
3,560,655	-		Sama_2989	0.39	-0.9
3,560,655	-		Sama_2989	0.39	-1.2
3,560,663	+		Sama_2989	0.39	-1.5
3,560,663	+		Sama_2989	0.39	+0.5
3,560,664	-		Sama_2989	0.39	-0.8
3,560,729	+		Sama_2989	0.43	-1.0
3,560,730	-		Sama_2989	0.43	+1.0
3,560,730	-		Sama_2989	0.43	+0.9
3,560,742	+		Sama_2989	0.44	-0.3
3,560,794	+		Sama_2989	0.47	+0.4
3,560,794	+		Sama_2989	0.47	+1.5
3,560,795	-		Sama_2989	0.47	+0.2
3,560,795	-		Sama_2989	0.47	+0.6
3,560,795	-		Sama_2989	0.47	+0.9
3,560,881	+		Sama_2989	0.52	-1.1
3,560,881	+		Sama_2989	0.52	+1.2
3,560,886	-		Sama_2989	0.52	-0.1
3,560,984	-		Sama_2989	0.58	-1.6
3,561,005	+		Sama_2989	0.59	-1.9
3,561,005	+		Sama_2989	0.59	+0.0
3,561,005	+		Sama_2989	0.59	-0.1
3,561,006	-		Sama_2989	0.59	-0.5
3,561,006	-		Sama_2989	0.59	+0.0
3,561,031	+		Sama_2989	0.60	-0.4
3,561,031	+		Sama_2989	0.60	+0.4
3,561,032	-		Sama_2989	0.60	+1.9
3,561,043	+		Sama_2989	0.61	+0.5
3,561,043	+		Sama_2989	0.61	+0.6
3,561,043	+		Sama_2989	0.61	+0.3
3,561,043	+		Sama_2989	0.61	-0.7
3,561,043	+		Sama_2989	0.61	-2.6
3,561,044	-		Sama_2989	0.61	-0.4
3,561,044	-		Sama_2989	0.61	+0.2
3,561,044	-		Sama_2989	0.61	+1.7
3,561,044	-		Sama_2989	0.61	+0.0
3,561,060	-		Sama_2989	0.62	-1.6
3,561,060	-		Sama_2989	0.62	-2.6
3,561,062	+		Sama_2989	0.62	+0.6
3,561,062	+		Sama_2989	0.62	-0.5
3,561,062	+		Sama_2989	0.62	-2.3
3,561,063	-		Sama_2989	0.62	-0.7
3,561,072	+		Sama_2989	0.63	-0.1
3,561,072	+		Sama_2989	0.63	+1.1
3,561,072	+		Sama_2989	0.63	+0.2
3,561,072	+		Sama_2989	0.63	-0.7
3,561,072	+		Sama_2989	0.63	+1.5
3,561,073	-		Sama_2989	0.63	-0.3
3,561,163	+		Sama_2989	0.68	+4.1
3,561,163	+		Sama_2989	0.68	-0.1
3,561,164	-		Sama_2989	0.68	+0.8
3,561,251	+		Sama_2989	0.73	-2.7
3,561,251	+		Sama_2989	0.73	-0.7
3,561,252	-		Sama_2989	0.73	-2.3
3,561,252	-		Sama_2989	0.73	-1.6
3,561,330	+		Sama_2989	0.78	-1.6
3,561,330	+		Sama_2989	0.78	-0.9
3,561,330	+		Sama_2989	0.78	+1.1
3,561,330	+		Sama_2989	0.78	-2.0
3,561,331	-		Sama_2989	0.78	-0.8
3,561,331	-		Sama_2989	0.78	-0.9
3,561,331	-		Sama_2989	0.78	-1.3
3,561,331	-		Sama_2989	0.78	+1.4
3,561,331	-		Sama_2989	0.78	-1.1
3,561,331	-		Sama_2989	0.78	-2.6
3,561,331	-		Sama_2989	0.78	+1.1
3,561,334	+		Sama_2989	0.78	-0.9
3,561,334	+		Sama_2989	0.78	-1.3
3,561,335	-		Sama_2989	0.78	-0.3
3,561,349	+		Sama_2989	0.79	-0.4
3,561,359	+		Sama_2989	0.79	-0.4
3,561,359	+		Sama_2989	0.79	-0.1
3,561,359	+		Sama_2989	0.79	-1.9
3,561,359	+		Sama_2989	0.79	+0.7
3,561,359	+		Sama_2989	0.79	-1.3
3,561,359	+		Sama_2989	0.79	-0.8
3,561,359	+		Sama_2989	0.79	-0.0
3,561,359	+		Sama_2989	0.79	-0.9
3,561,359	+		Sama_2989	0.79	+0.1
3,561,359	+		Sama_2989	0.79	+1.4
3,561,359	+		Sama_2989	0.79	-1.0
3,561,359	+		Sama_2989	0.79	-1.0
3,561,359	+		Sama_2989	0.79	+0.1
3,561,359	+		Sama_2989	0.79	-1.8
3,561,359	+		Sama_2989	0.79	+0.6
3,561,360	-		Sama_2989	0.79	-0.0
3,561,360	-		Sama_2989	0.79	-3.1
3,561,360	-		Sama_2989	0.79	-0.1
3,561,360	-		Sama_2989	0.79	+1.0
3,561,360	-		Sama_2989	0.79	-0.4
3,561,360	-		Sama_2989	0.79	-1.3
3,561,360	-		Sama_2989	0.79	-2.2
3,561,360	-		Sama_2989	0.79	+1.4
3,561,360	-		Sama_2989	0.79	+0.1
3,561,360	-		Sama_2989	0.79	-0.7
3,561,360	-		Sama_2989	0.79	+0.6
3,561,360	-		Sama_2989	0.79	+2.1
3,561,360	-		Sama_2989	0.79	-1.1
3,561,360	-		Sama_2989	0.79	-1.3
3,561,360	-		Sama_2989	0.79	-1.5
3,561,360	-		Sama_2989	0.79	-0.5
3,561,360	-		Sama_2989	0.79	-0.5
3,561,360	-		Sama_2989	0.79	+0.6
3,561,360	-		Sama_2989	0.79	-0.3
3,561,360	-		Sama_2989	0.79	-1.6
3,561,360	-		Sama_2989	0.79	+0.7
3,561,583	+				-0.6
3,561,584	-				+0.0
3,561,600	+				-0.6
3,561,601	-				-0.2
3,561,656	+				-0.7
3,561,656	+				+0.6
3,561,656	+				+0.3
3,561,656	+				-0.5
3,561,656	+				-0.4
3,561,656	+				+0.2
3,561,656	+				-0.7
3,561,657	-				+0.1
3,561,657	-				-0.6
3,561,657	-				-0.1
3,561,657	-				-0.4
3,561,657	-				-0.5
3,561,716	+				-1.0
3,561,717	-				-0.7
3,561,717	-				-1.6
3,561,717	-				-0.7
3,561,744	+				-0.3
3,561,744	+				+0.0
3,561,744	+				-1.5
3,561,744	+				+0.3
3,561,744	+				-0.1
3,561,744	+				+0.6
3,561,744	+				+2.6
3,561,744	+				+2.2
3,561,744	+				-0.6
3,561,745	-				+0.8
3,561,745	-				+0.4
3,561,745	-				+0.6
3,561,745	-				+0.8
3,561,745	-				+1.0
3,561,745	-				-0.3
3,561,747	+				-0.6
3,561,748	-				-3.2
3,561,748	-				-0.2
3,561,748	-				-1.1
3,561,788	+				-1.6
3,561,788	+				+0.2
3,561,788	+				+1.2
3,561,789	-				+0.1
3,561,809	-				+0.8
3,561,839	+				-1.7
3,561,839	+				-0.9
3,561,903	+				-1.6
3,561,931	+				-0.1
3,561,932	-				-0.0
3,561,944	-				+0.6
3,561,963	+				-1.6
3,561,977	+				+0.7
3,561,978	-				+0.8
3,561,980	+				-0.7
3,562,024	+				-0.4
3,562,024	+				+0.4
3,562,024	+				+0.9
3,562,025	-				-2.5
3,562,025	-				-0.5
3,562,025	-				-0.6
3,562,025	-				-0.6
3,562,025	-				-0.5
3,562,025	-				-1.7
3,562,025	-				+0.7
3,562,025	-				-0.9
3,562,027	+				-0.0
3,562,027	+				+0.0
3,562,063	-				-2.3
3,562,068	+				+0.6
3,562,068	+				-0.4
3,562,069	-				-1.0
3,562,081	+				+0.1
3,562,081	+				+0.8
3,562,081	+				+1.1
3,562,081	+				+0.1
3,562,082	-				+1.5
3,562,082	-				+0.5
3,562,082	-				+0.1
3,562,115	+				+1.1
3,562,115	+				+0.0
3,562,115	+				-2.2
3,562,116	-				-0.6
3,562,116	-				-1.1
3,562,116	-				-1.2
3,562,116	-				-1.5
3,562,171	+				-0.4
3,562,171	+				-0.6
3,562,171	+				-1.1
3,562,172	-				+1.0
3,562,172	-				-0.9
3,562,172	-				+0.6
3,562,172	-				-0.2
3,562,172	-				+1.0
3,562,205	+				+1.5
3,562,205	+				-2.2
3,562,205	+				-1.2
3,562,206	-				-0.7
3,562,206	-				-1.5
3,562,258	+				-1.1
3,562,258	+				-2.1
3,562,259	-				+0.9
3,562,259	-				+0.1
3,562,259	-				-0.3
3,562,294	+				-0.9
3,562,294	+				-1.3
3,562,295	-				-0.0
3,562,346	-				+0.2
3,562,346	-				-1.0
3,562,382	+		Sama_2990	0.10	-0.7
3,562,382	+		Sama_2990	0.10	+0.2
3,562,383	-		Sama_2990	0.10	+2.6
3,562,383	-		Sama_2990	0.10	-1.8
3,562,383	-		Sama_2990	0.10	-1.3
3,562,383	-		Sama_2990	0.10	+0.4
3,562,383	-		Sama_2990	0.10	-0.3
3,562,383	-		Sama_2990	0.10	-0.9
3,562,384	+		Sama_2990	0.10	-1.8
3,562,384	+		Sama_2990	0.10	-1.4
3,562,385	-		Sama_2990	0.10	-1.2
3,562,385	-		Sama_2990	0.10	+0.8
3,562,385	-		Sama_2990	0.10	-0.7
3,562,385	-		Sama_2990	0.10	-1.5
3,562,402	+		Sama_2990	0.11	-1.5
3,562,402	+		Sama_2990	0.11	-2.8
3,562,402	+		Sama_2990	0.11	-0.1
3,562,402	+		Sama_2990	0.11	+1.3
3,562,403	-		Sama_2990	0.11	-0.4
3,562,471	+		Sama_2990	0.14	-0.9
3,562,501	+		Sama_2990	0.16	+0.5
3,562,502	-		Sama_2990	0.16	-1.9
3,562,502	-		Sama_2990	0.16	-0.8
3,562,502	-		Sama_2990	0.16	+1.1
3,562,502	-		Sama_2990	0.16	+1.2
3,562,525	+		Sama_2990	0.17	-0.7
3,562,552	+		Sama_2990	0.18	+0.7
3,562,552	+		Sama_2990	0.18	-0.7
3,562,616	+		Sama_2990	0.22	-0.0
3,562,616	+		Sama_2990	0.22	+2.3
3,562,617	-		Sama_2990	0.22	-1.7
3,562,617	-		Sama_2990	0.22	-0.4
3,562,617	-		Sama_2990	0.22	-0.1
3,562,617	-		Sama_2990	0.22	+1.7
3,562,645	+		Sama_2990	0.23	+1.9
3,562,646	-		Sama_2990	0.23	+1.2
3,562,696	+		Sama_2990	0.26	+0.6
3,562,697	-		Sama_2990	0.26	-0.5
3,562,697	-		Sama_2990	0.26	+0.6