Strain Fitness in Shewanella amazonensis SB2B around Sama_2906

Experiment: Putrescine (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Putrescine (N)
3,453,094	-				+2.0
3,453,145	-		Sama_2905	0.11	-0.6
3,453,177	-		Sama_2905	0.14	-0.6
3,453,200	-		Sama_2905	0.17	-0.4
3,453,242	-		Sama_2905	0.21	-0.7
3,453,369	+		Sama_2905	0.34	-1.8
3,453,399	+		Sama_2905	0.37	-1.4
3,453,464	+		Sama_2905	0.43	+0.8
3,453,464	+		Sama_2905	0.43	-1.0
3,453,465	-		Sama_2905	0.43	+0.1
3,453,465	-		Sama_2905	0.43	-1.7
3,453,521	-		Sama_2905	0.49	+0.7
3,453,628	+		Sama_2905	0.60	-1.2
3,453,660	-		Sama_2905	0.63	+2.0
3,453,722	+		Sama_2905	0.69	+0.4
3,453,766	-		Sama_2905	0.73	-0.0
3,453,796	-		Sama_2905	0.76	+1.2
3,453,796	-		Sama_2905	0.76	-1.1
3,453,801	-		Sama_2905	0.77	+1.7
3,453,818	+		Sama_2905	0.79	-1.3
3,453,819	-		Sama_2905	0.79	-0.7
3,453,831	+		Sama_2905	0.80	+1.5
3,453,839	+		Sama_2905	0.81	-1.2
3,453,845	-		Sama_2905	0.81	-0.9
3,453,845	-		Sama_2905	0.81	-0.2
3,453,874	-		Sama_2905	0.84	+1.8
3,453,881	+		Sama_2905	0.85	-0.6
3,453,881	+		Sama_2905	0.85	-0.0
3,453,894	+		Sama_2905	0.86	+0.2
3,453,925	+		Sama_2905	0.89	+1.1
3,453,962	-				-1.1
3,453,962	-				+0.6
3,453,962	-				+1.5
3,453,965	+				-2.7
3,453,965	+				+0.8
3,453,965	+				-0.2
3,453,965	+				-0.1
3,453,965	+				-1.1
3,453,965	+				-0.6
3,453,965	+				+1.5
3,453,965	+				+0.9
3,453,965	+				+1.1
3,453,965	+				+2.4
3,453,966	-				+0.1
3,453,966	-				-0.3
3,453,966	-				+1.4
3,453,966	-				-0.2
3,453,966	-				-1.4
3,453,966	-				-0.4
3,453,966	-				+0.1
3,453,966	-				+0.0
3,453,966	-				+1.0
3,453,966	-				-1.5
3,453,966	-				-0.2
3,453,980	+				+1.0
3,453,981	-				+1.2
3,453,981	-				+0.3
3,454,065	+				+1.2
3,454,065	+				-0.2
3,454,066	-				+1.0
3,454,066	-				-1.2
3,454,066	-				+1.9
3,454,066	-				+0.6
3,454,066	-				-1.4
3,454,067	+				-1.8
3,454,067	+				-0.9
3,454,068	-				-2.5
3,454,068	-				-1.9
3,454,080	+				+0.3
3,454,081	-				+0.2
3,454,081	-				+0.7
3,454,081	-				+2.8
3,454,081	-				+0.7
3,454,081	-				-0.1
3,454,091	+				-0.7
3,454,092	-				+0.5
3,454,092	-				-0.1
3,454,092	-				-1.6
3,454,117	+				+0.4
3,454,117	+				-0.1
3,454,177	+				-1.9
3,454,177	+				-0.2
3,454,178	-		Sama_2906	0.10	-1.8
3,454,178	-		Sama_2906	0.10	-0.4
3,454,178	-		Sama_2906	0.10	-1.6
3,454,185	+		Sama_2906	0.11	+0.6
3,454,185	+		Sama_2906	0.11	-0.4
3,454,185	+		Sama_2906	0.11	+1.2
3,454,186	-		Sama_2906	0.11	+0.2
3,454,186	-		Sama_2906	0.11	+0.2
3,454,186	-		Sama_2906	0.11	-1.3
3,454,330	-		Sama_2906	0.25	+0.3
3,454,330	-		Sama_2906	0.25	+0.6
3,454,330	-		Sama_2906	0.25	+0.8
3,454,464	+		Sama_2906	0.39	-0.2
3,454,465	-		Sama_2906	0.39	-1.7
3,454,465	-		Sama_2906	0.39	-0.2
3,454,465	-		Sama_2906	0.39	+0.5
3,454,511	+		Sama_2906	0.44	-0.3
3,454,512	-		Sama_2906	0.44	-1.3
3,454,512	-		Sama_2906	0.44	+0.1
3,454,521	+		Sama_2906	0.45	-0.9
3,454,521	+		Sama_2906	0.45	-1.3
3,454,521	+		Sama_2906	0.45	-1.6
3,454,521	+		Sama_2906	0.45	-0.7
3,454,521	+		Sama_2906	0.45	+1.1
3,454,521	+		Sama_2906	0.45	+0.2
3,454,521	+		Sama_2906	0.45	-0.0
3,454,521	+		Sama_2906	0.45	+1.3
3,454,521	+		Sama_2906	0.45	+1.3
3,454,521	+		Sama_2906	0.45	+1.1
3,454,521	+		Sama_2906	0.45	+0.1
3,454,521	+		Sama_2906	0.45	-1.6
3,454,521	+		Sama_2906	0.45	+0.4
3,454,521	+		Sama_2906	0.45	+0.4
3,454,521	+		Sama_2906	0.45	-0.0
3,454,521	+		Sama_2906	0.45	-0.9
3,454,521	+		Sama_2906	0.45	-2.6
3,454,521	+		Sama_2906	0.45	+0.2
3,454,521	+		Sama_2906	0.45	+1.0
3,454,521	+		Sama_2906	0.45	-0.3
3,454,521	+		Sama_2906	0.45	-1.1
3,454,522	-		Sama_2906	0.45	-3.2
3,454,522	-		Sama_2906	0.45	-1.2
3,454,522	-		Sama_2906	0.45	-0.3
3,454,522	-		Sama_2906	0.45	-1.6
3,454,522	-		Sama_2906	0.45	-0.0
3,454,522	-		Sama_2906	0.45	-2.2
3,454,522	-		Sama_2906	0.45	-1.8
3,454,522	-		Sama_2906	0.45	+0.3
3,454,522	-		Sama_2906	0.45	-1.2
3,454,522	-		Sama_2906	0.45	-1.1
3,454,522	-		Sama_2906	0.45	+0.2
3,454,522	-		Sama_2906	0.45	+0.5
3,454,522	-		Sama_2906	0.45	-1.5
3,454,522	-		Sama_2906	0.45	-1.0
3,454,522	-		Sama_2906	0.45	+0.2
3,454,570	+		Sama_2906	0.50	-0.5
3,454,589	+		Sama_2906	0.52	+0.2
3,454,589	+		Sama_2906	0.52	+0.6
3,454,590	-		Sama_2906	0.52	-0.6
3,454,590	-		Sama_2906	0.52	-0.6
3,454,663	+		Sama_2906	0.59	-1.6
3,454,700	-		Sama_2906	0.63	+0.2
3,454,700	-		Sama_2906	0.63	-0.2
3,454,750	+		Sama_2906	0.68	+1.1
3,454,751	-		Sama_2906	0.68	-0.5
3,454,855	-		Sama_2906	0.78	-0.8
3,454,876	-		Sama_2906	0.81	-0.6
3,454,950	+		Sama_2906	0.88	-0.1
3,454,951	-		Sama_2906	0.88	-0.6
3,454,951	-		Sama_2906	0.88	+0.7
3,454,951	-		Sama_2906	0.88	-1.5
3,455,009	+				-1.6
3,455,010	-				+0.0
3,455,010	-				-0.0
3,455,019	+				-1.6
3,455,020	-				+0.6
3,455,020	-				-0.4
3,455,020	-				+0.5
3,455,020	-				+0.3
3,455,029	+				-0.3
3,455,029	+				+0.7
3,455,042	+				-1.9
3,455,043	-				-0.8
3,455,043	-				-1.3
3,455,044	-				-0.1
3,455,072	-				+0.4
3,455,072	-				-0.4
3,455,096	+				+0.9
3,455,097	-				+0.0
3,455,108	+				-0.1
3,455,253	+				-2.5
3,455,265	+				-0.1
3,455,266	-				-2.0
3,455,266	-				-1.1
3,455,266	-				-1.8
3,455,274	-				+1.3
3,455,324	-				-0.6
3,455,328	-				-0.7
3,455,333	-				-0.4
3,455,336	+				+2.0
3,455,373	-				+2.4
3,455,383	-				-0.9
3,455,386	-				-1.4
3,455,386	-				-2.8
3,455,435	+				-0.7
3,455,443	+				-0.6
3,455,513	+				-0.6
3,455,588	+				+0.7
3,455,602	-				-1.3
3,455,608	-				-0.3
3,455,649	-				-0.6
3,455,666	-				-0.2
3,455,713	-				-0.4
3,455,806	-		Sama_2907	0.11	+0.6
3,455,834	-		Sama_2907	0.14	+1.9
3,455,959	+		Sama_2907	0.26	+0.5
3,456,000	+		Sama_2907	0.30	+1.5
3,456,000	+		Sama_2907	0.30	+0.6
3,456,025	+		Sama_2907	0.33	+0.3
3,456,026	-		Sama_2907	0.33	-0.2
3,456,026	-		Sama_2907	0.33	-2.1
3,456,026	-		Sama_2907	0.33	-0.8
3,456,030	+		Sama_2907	0.33	+0.3
3,456,030	+		Sama_2907	0.33	+1.0
3,456,030	+		Sama_2907	0.33	-2.1