Strain Fitness in Shewanella amazonensis SB2B around Sama_2642

Experiment: Putrescine (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Putrescine (N)
3,164,180	+		Sama_2641	0.25	-2.3
3,164,180	+		Sama_2641	0.25	+0.6
3,164,181	-		Sama_2641	0.25	-0.0
3,164,281	+		Sama_2641	0.33	-2.1
3,164,302	+		Sama_2641	0.35	-2.3
3,164,303	-		Sama_2641	0.35	-1.0
3,164,322	+		Sama_2641	0.37	-2.1
3,164,322	+		Sama_2641	0.37	-1.3
3,164,322	+		Sama_2641	0.37	-1.5
3,164,322	+		Sama_2641	0.37	+0.6
3,164,323	-		Sama_2641	0.37	-2.1
3,164,323	-		Sama_2641	0.37	-2.3
3,164,368	+		Sama_2641	0.41	-0.6
3,164,368	+		Sama_2641	0.41	-1.4
3,164,600	-		Sama_2641	0.61	-1.4
3,164,600	-		Sama_2641	0.61	-2.0
3,164,611	-		Sama_2641	0.62	-1.6
3,164,719	+		Sama_2641	0.72	-2.3
3,164,719	+		Sama_2641	0.72	-1.4
3,164,737	-		Sama_2641	0.74	-2.3
3,164,737	-		Sama_2641	0.74	-1.8
3,164,752	+		Sama_2641	0.75	-1.8
3,164,752	+		Sama_2641	0.75	-2.0
3,164,752	+		Sama_2641	0.75	-1.5
3,164,753	-		Sama_2641	0.75	-0.0
3,164,753	-		Sama_2641	0.75	-3.7
3,164,753	-		Sama_2641	0.75	-2.9
3,164,753	-		Sama_2641	0.75	-2.0
3,164,753	-		Sama_2641	0.75	-3.1
3,164,753	-		Sama_2641	0.75	-0.5
3,164,770	-		Sama_2641	0.76	-0.7
3,164,785	+		Sama_2641	0.78	-1.2
3,164,786	-		Sama_2641	0.78	-0.6
3,164,806	-		Sama_2641	0.80	-1.7
3,164,809	+		Sama_2641	0.80	-0.4
3,164,809	+		Sama_2641	0.80	-1.3
3,164,809	+		Sama_2641	0.80	-1.9
3,164,809	+		Sama_2641	0.80	-2.8
3,164,810	-		Sama_2641	0.80	-2.2
3,164,810	-		Sama_2641	0.80	-2.9
3,164,810	-		Sama_2641	0.80	-1.1
3,164,849	+		Sama_2641	0.83	-1.2
3,164,849	+		Sama_2641	0.83	-0.8
3,164,849	+		Sama_2641	0.83	-2.8
3,164,850	-		Sama_2641	0.83	-3.3
3,164,858	-		Sama_2641	0.84	-2.3
3,164,981	+				-1.2
3,164,981	+				-4.0
3,164,982	-				-2.0
3,164,982	-				-1.5
3,165,011	-				-3.7
3,165,031	+				-2.4
3,165,031	+				+0.3
3,165,031	+				-3.0
3,165,032	-				-0.8
3,165,038	-				-2.0
3,165,038	-				-0.8
3,165,038	-				-1.8
3,165,038	-				-2.8
3,165,038	-				-1.6
3,165,041	+				-2.7
3,165,041	+				-0.6
3,165,041	+				-1.2
3,165,041	+				-2.2
3,165,042	-				-1.4
3,165,042	-				-0.2
3,165,042	-				-2.5
3,165,042	-				-2.4
3,165,042	-				-2.2
3,165,097	+				-1.8
3,165,097	+				-0.2
3,165,110	+				-1.8
3,165,110	+				-0.8
3,165,110	+				-1.9
3,165,111	-				-0.4
3,165,111	-				-1.2
3,165,111	-				+1.5
3,165,111	-				-1.2
3,165,149	-				+0.6
3,165,211	+				-3.3
3,165,211	+				-1.5
3,165,211	+				-0.8
3,165,261	+				-2.6
3,165,261	+				-2.5
3,165,304	+		Sama_2642	0.14	-1.4
3,165,304	+		Sama_2642	0.14	-0.9
3,165,305	-		Sama_2642	0.14	-2.2
3,165,327	+		Sama_2642	0.16	-2.6
3,165,327	+		Sama_2642	0.16	-1.4
3,165,328	-		Sama_2642	0.16	-0.2
3,165,328	-		Sama_2642	0.16	-1.3
3,165,328	-		Sama_2642	0.16	-1.5
3,165,328	-		Sama_2642	0.16	+0.1
3,165,328	-		Sama_2642	0.16	-1.3
3,165,328	-		Sama_2642	0.16	-1.5
3,165,336	+		Sama_2642	0.16	-2.0
3,165,336	+		Sama_2642	0.16	-2.0
3,165,336	+		Sama_2642	0.16	-0.4
3,165,336	+		Sama_2642	0.16	-1.5
3,165,336	+		Sama_2642	0.16	-3.5
3,165,336	+		Sama_2642	0.16	-0.3
3,165,336	+		Sama_2642	0.16	-2.3
3,165,336	+		Sama_2642	0.16	-0.9
3,165,336	+		Sama_2642	0.16	-1.0
3,165,336	+		Sama_2642	0.16	-0.4
3,165,337	-		Sama_2642	0.17	-2.6
3,165,337	-		Sama_2642	0.17	-0.8
3,165,337	-		Sama_2642	0.17	-3.0
3,165,337	-		Sama_2642	0.17	-0.9
3,165,337	-		Sama_2642	0.17	-0.4
3,165,337	-		Sama_2642	0.17	-1.4
3,165,337	-		Sama_2642	0.17	-2.5
3,165,337	-		Sama_2642	0.17	-3.2
3,165,337	-		Sama_2642	0.17	-0.6
3,165,340	+		Sama_2642	0.17	-1.7
3,165,340	+		Sama_2642	0.17	-1.2
3,165,340	+		Sama_2642	0.17	-1.9
3,165,341	-		Sama_2642	0.17	-0.6
3,165,341	-		Sama_2642	0.17	-3.7
3,165,382	+		Sama_2642	0.21	-3.0
3,165,383	-		Sama_2642	0.21	-2.2
3,165,460	+		Sama_2642	0.28	-1.1
3,165,471	+		Sama_2642	0.29	-3.5
3,165,524	+		Sama_2642	0.34	-1.8
3,165,525	-		Sama_2642	0.34	-1.3
3,165,525	-		Sama_2642	0.34	-0.4
3,165,582	+		Sama_2642	0.39	-1.0
3,165,582	+		Sama_2642	0.39	+0.1
3,165,582	+		Sama_2642	0.39	-1.6
3,165,582	+		Sama_2642	0.39	-0.7
3,165,582	+		Sama_2642	0.39	-0.8
3,165,582	+		Sama_2642	0.39	-0.5
3,165,582	+		Sama_2642	0.39	-0.4
3,165,583	-		Sama_2642	0.39	-3.5
3,165,583	-		Sama_2642	0.39	-1.0
3,165,600	+		Sama_2642	0.40	-2.0
3,165,601	-		Sama_2642	0.41	-1.7
3,165,609	+		Sama_2642	0.41	-1.7
3,165,609	+		Sama_2642	0.41	-0.6
3,165,609	+		Sama_2642	0.41	-2.9
3,165,610	-		Sama_2642	0.41	-0.9
3,165,610	-		Sama_2642	0.41	-2.7
3,165,610	-		Sama_2642	0.41	-2.7
3,165,610	-		Sama_2642	0.41	-2.4
3,165,630	-		Sama_2642	0.43	-3.7
3,165,630	-		Sama_2642	0.43	-1.8
3,165,670	+		Sama_2642	0.47	-1.7
3,165,687	+		Sama_2642	0.48	-2.9
3,165,687	+		Sama_2642	0.48	-0.2
3,165,687	+		Sama_2642	0.48	-2.9
3,165,688	-		Sama_2642	0.48	-3.0
3,165,688	-		Sama_2642	0.48	-2.6
3,165,688	-		Sama_2642	0.48	-2.2
3,165,824	+		Sama_2642	0.61	-1.8
3,165,824	+		Sama_2642	0.61	-3.0
3,165,825	-		Sama_2642	0.61	-1.2
3,165,867	+		Sama_2642	0.65	-1.2
3,165,868	-		Sama_2642	0.65	-3.7
3,165,868	-		Sama_2642	0.65	-2.0
3,165,868	-		Sama_2642	0.65	-2.5
3,165,971	-		Sama_2642	0.74	-1.4
3,166,089	+		Sama_2642	0.85	-2.0
3,166,089	+		Sama_2642	0.85	-1.0
3,166,089	+		Sama_2642	0.85	-0.6
3,166,090	-		Sama_2642	0.85	-1.9
3,166,090	-		Sama_2642	0.85	-0.8
3,166,090	-		Sama_2642	0.85	-2.6
3,166,090	-		Sama_2642	0.85	-2.7
3,166,090	-		Sama_2642	0.85	-2.0
3,166,090	-		Sama_2642	0.85	-1.8
3,166,090	-		Sama_2642	0.85	-1.9
3,166,090	-		Sama_2642	0.85	-0.4
3,166,090	-		Sama_2642	0.85	-2.0
3,166,094	+		Sama_2642	0.85	-1.8
3,166,145	-		Sama_2642	0.90	-1.5
3,166,145	-		Sama_2642	0.90	-1.9
3,166,146	+				-2.2
3,166,146	+				-2.0
3,166,146	+				-2.0
3,166,146	+				-2.9
3,166,146	+				-1.9
3,166,147	-				-0.8
3,166,147	-				-1.4
3,166,159	+				-1.3
3,166,159	+				-2.3
3,166,159	+				-1.1
3,166,160	-				-0.8
3,166,160	-				-1.4
3,166,161	+				-0.9
3,166,161	+				+0.4
3,166,162	-				-2.2
3,166,245	-				-0.6
3,166,245	-				-2.5
3,166,247	+				-1.8
3,166,247	+				-1.8
3,166,247	+				-2.6
3,166,248	-				-3.7
3,166,248	-				-1.9
3,166,258	+				-1.4
3,166,258	+				-3.0
3,166,258	+				-1.3
3,166,258	+				-2.6
3,166,258	+				-1.4
3,166,258	+				-3.1
3,166,258	+				-2.3
3,166,258	+				-0.7
3,166,259	-				-2.7
3,166,259	-				-2.6
3,166,274	+				-2.6
3,166,275	-				-1.3
3,166,280	+				-1.9
3,166,280	+				-2.3
3,166,280	+				-1.4
3,166,281	-				-3.0
3,166,281	-				-0.1
3,166,281	-				-3.0
3,166,281	-				-1.5
3,166,281	-				+0.1
3,166,295	+				-0.8
3,166,296	-				-1.8
3,166,296	-				+0.7
3,166,328	+				-0.4
3,166,328	+				-0.2
3,166,329	-				+0.1
3,166,333	+				+2.8
3,166,334	-				-0.7
3,166,340	-				-2.0
3,166,340	-				-1.8
3,166,340	-				-3.6
3,166,351	+				-2.1
3,166,351	+				-1.2
3,166,351	+				-1.5
3,166,351	+				-2.7
3,166,352	-				+0.1
3,166,352	-				-1.8
3,166,352	-				-0.7
3,166,352	-				-2.2
3,166,352	-				-0.2
3,166,403	+				-1.8
3,166,404	-				-1.4
3,166,419	-				-2.0
3,166,419	-				-1.2
3,166,422	-				-0.8
3,166,422	-				-1.9
3,166,422	-				-2.2
3,166,434	-				-0.8
3,166,514	+				-2.2
3,166,514	+				-0.0
3,166,514	+				-1.4
3,166,536	-				-0.0
3,166,536	-				+0.0
3,166,536	-				-0.7
3,166,580	+		Sama_2643	0.11	-2.0
3,166,727	+		Sama_2643	0.22	-2.0
3,166,727	+		Sama_2643	0.22	-1.5
3,166,728	-		Sama_2643	0.22	-1.8
3,166,738	+		Sama_2643	0.22	-0.7
3,166,738	+		Sama_2643	0.22	-1.2
3,166,739	-		Sama_2643	0.22	-0.8
3,166,739	-		Sama_2643	0.22	-2.2
3,166,739	-		Sama_2643	0.22	-2.3
3,166,763	+		Sama_2643	0.24	-1.8
3,166,790	+		Sama_2643	0.26	-2.0
3,166,790	+		Sama_2643	0.26	-1.8
3,166,790	+		Sama_2643	0.26	-1.5
3,166,796	+		Sama_2643	0.27	-3.7
3,166,810	-		Sama_2643	0.28	-1.8
3,166,837	+		Sama_2643	0.30	-2.4
3,166,841	+		Sama_2643	0.30	-2.6
3,166,841	+		Sama_2643	0.30	-2.5
3,166,842	-		Sama_2643	0.30	-2.5
3,166,842	-		Sama_2643	0.30	+0.6
3,166,842	-		Sama_2643	0.30	+0.5
3,166,903	-		Sama_2643	0.34	-0.8
3,166,903	-		Sama_2643	0.34	+0.2
3,166,903	-		Sama_2643	0.34	-0.1
3,166,903	-		Sama_2643	0.34	-0.2
3,166,903	-		Sama_2643	0.34	+0.3
3,166,903	-		Sama_2643	0.34	-0.2
3,166,903	-		Sama_2643	0.34	-1.0
3,166,903	-		Sama_2643	0.34	-2.3
3,166,903	-		Sama_2643	0.34	-0.3
3,166,924	+		Sama_2643	0.36	+0.1
3,166,925	-		Sama_2643	0.36	-0.6
3,166,925	-		Sama_2643	0.36	-1.8
3,166,925	-		Sama_2643	0.36	-0.0
3,166,956	+		Sama_2643	0.38	-1.8
3,166,956	+		Sama_2643	0.38	-1.5
3,166,956	+		Sama_2643	0.38	-1.4
3,166,957	-		Sama_2643	0.38	+0.1
3,166,957	-		Sama_2643	0.38	-1.2
3,167,003	+		Sama_2643	0.42	-0.5
3,167,037	-		Sama_2643	0.44	-0.3
3,167,046	-		Sama_2643	0.45	-0.8
3,167,046	-		Sama_2643	0.45	+0.1
3,167,070	-		Sama_2643	0.46	+0.4
3,167,083	+		Sama_2643	0.47	-1.9
3,167,084	-		Sama_2643	0.47	-1.0
3,167,150	+		Sama_2643	0.52	-1.6
3,167,150	+		Sama_2643	0.52	-0.1
3,167,150	+		Sama_2643	0.52	-0.6
3,167,150	+		Sama_2643	0.52	-1.2
3,167,151	-		Sama_2643	0.52	-0.5
3,167,151	-		Sama_2643	0.52	-1.9
3,167,151	-		Sama_2643	0.52	-0.4
3,167,151	-		Sama_2643	0.52	-2.4
3,167,198	+		Sama_2643	0.56	-3.0
3,167,222	+		Sama_2643	0.57	-0.3
3,167,223	-		Sama_2643	0.57	-0.8
3,167,245	+		Sama_2643	0.59	+0.2
3,167,245	+		Sama_2643	0.59	-2.1