Strain Fitness in Shewanella amazonensis SB2B around Sama_2401

Experiment: Putrescine (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Putrescine (N)
2,883,855	+		Sama_2400	0.56	+0.0
2,883,855	+		Sama_2400	0.56	-2.0
2,883,855	+		Sama_2400	0.56	-0.6
2,883,856	-		Sama_2400	0.56	+0.7
2,883,856	-		Sama_2400	0.56	-0.7
2,883,936	+		Sama_2400	0.60	-0.2
2,883,937	-		Sama_2400	0.60	-0.8
2,883,937	-		Sama_2400	0.60	+0.0
2,883,938	+		Sama_2400	0.60	+0.8
2,883,938	+		Sama_2400	0.60	-1.5
2,883,939	-		Sama_2400	0.60	+0.3
2,883,939	-		Sama_2400	0.60	+0.6
2,883,944	+		Sama_2400	0.60	-0.7
2,883,944	+		Sama_2400	0.60	-0.1
2,884,048	+		Sama_2400	0.66	+0.2
2,884,048	+		Sama_2400	0.66	+0.7
2,884,049	-		Sama_2400	0.66	-0.2
2,884,141	+		Sama_2400	0.71	-1.1
2,884,243	-		Sama_2400	0.77	-0.3
2,884,332	+		Sama_2400	0.82	-2.4
2,884,332	+		Sama_2400	0.82	+0.1
2,884,332	+		Sama_2400	0.82	-2.2
2,884,342	+		Sama_2400	0.82	+0.9
2,884,343	-		Sama_2400	0.82	+2.2
2,884,371	-		Sama_2400	0.84	+1.8
2,884,398	+		Sama_2400	0.85	+0.5
2,884,398	+		Sama_2400	0.85	-0.2
2,884,399	-		Sama_2400	0.85	+0.1
2,884,399	-		Sama_2400	0.85	-0.8
2,884,399	-		Sama_2400	0.85	+1.1
2,884,402	-		Sama_2400	0.86	-0.2
2,884,402	-		Sama_2400	0.86	+1.5
2,884,402	-		Sama_2400	0.86	-1.0
2,884,431	+		Sama_2400	0.87	-1.0
2,884,493	+				-0.0
2,884,494	-				+0.3
2,884,494	-				-0.5
2,884,515	+				-0.4
2,884,515	+				+0.7
2,884,515	+				-0.9
2,884,557	+				+0.2
2,884,557	+				+1.2
2,884,557	+				+1.3
2,884,558	-				+0.0
2,884,558	-				-0.5
2,884,558	-				-0.5
2,884,639	+				+0.8
2,884,640	-				-0.1
2,884,643	-				+0.5
2,884,643	-				-0.3
2,884,660	-				+0.6
2,884,668	+				+1.8
2,884,684	+				-0.7
2,884,684	+				+0.1
2,884,685	-				-0.5
2,884,725	+				+0.0
2,884,725	+				-1.1
2,884,760	+				-0.2
2,884,780	+				-1.5
2,884,780	+				+0.2
2,884,780	+				-1.0
2,884,780	+				-2.2
2,884,781	-				+2.0
2,884,781	-				+0.1
2,884,781	-				+0.1
2,884,781	-				+0.5
2,884,781	-				+2.3
2,884,781	-				+0.1
2,884,781	-				+0.4
2,884,781	-				-1.1
2,884,782	+				+0.8
2,884,782	+				-1.1
2,884,782	+				+0.3
2,884,782	+				-1.1
2,884,782	+				-0.0
2,884,782	+				-0.3
2,884,783	-				+0.5
2,884,783	-				-1.5
2,884,783	-				+0.0
2,884,783	-				+0.7
2,884,783	-				-1.0
2,884,783	-				-0.5
2,884,783	-				-1.4
2,884,783	-				+0.4
2,884,783	-				+1.5
2,884,784	+				-0.5
2,884,784	+				-2.3
2,884,838	+				+3.0
2,884,839	-				-0.3
2,884,839	-				-2.7
2,884,984	+				-1.2
2,885,051	+		Sama_2401	0.14	+1.3
2,885,052	-		Sama_2401	0.14	+0.5
2,885,052	-		Sama_2401	0.14	+0.5
2,885,052	-		Sama_2401	0.14	+0.3
2,885,052	-		Sama_2401	0.14	-0.2
2,885,052	-		Sama_2401	0.14	+0.3
2,885,052	-		Sama_2401	0.14	+1.0
2,885,293	+		Sama_2401	0.30	-2.1
2,885,293	+		Sama_2401	0.30	-0.2
2,885,294	-		Sama_2401	0.30	+0.9
2,885,294	-		Sama_2401	0.30	-1.6
2,885,294	-		Sama_2401	0.30	+0.6
2,885,331	+		Sama_2401	0.32	+0.7
2,885,359	+		Sama_2401	0.34	-0.1
2,885,360	-		Sama_2401	0.34	+1.2
2,885,360	-		Sama_2401	0.34	+1.0
2,885,382	+		Sama_2401	0.36	+0.3
2,885,382	+		Sama_2401	0.36	+0.2
2,885,382	+		Sama_2401	0.36	-0.9
2,885,383	-		Sama_2401	0.36	-0.5
2,885,383	-		Sama_2401	0.36	-1.3
2,885,383	-		Sama_2401	0.36	-0.1
2,885,383	-		Sama_2401	0.36	-1.2
2,885,383	-		Sama_2401	0.36	-0.4
2,885,384	+		Sama_2401	0.36	+2.1
2,885,385	-		Sama_2401	0.36	-0.2
2,885,396	-		Sama_2401	0.37	-1.7
2,885,396	-		Sama_2401	0.37	-0.8
2,885,485	-		Sama_2401	0.43	+0.2
2,885,637	+		Sama_2401	0.53	+2.7
2,885,638	-		Sama_2401	0.53	-0.4
2,885,638	-		Sama_2401	0.53	-0.8
2,885,638	-		Sama_2401	0.53	-1.0
2,885,745	-		Sama_2401	0.60	+0.8
2,885,804	+		Sama_2401	0.64	-1.5
2,885,888	+		Sama_2401	0.69	-1.7
2,885,971	-		Sama_2401	0.75	-2.2
2,885,971	-		Sama_2401	0.75	-0.9
2,886,014	+		Sama_2401	0.77	+0.3
2,886,015	-		Sama_2401	0.77	-2.6
2,886,043	-		Sama_2401	0.79	+1.1
2,886,043	-		Sama_2401	0.79	+0.6
2,886,044	+		Sama_2401	0.79	-3.0
2,886,045	-		Sama_2401	0.79	-1.6
2,886,045	-		Sama_2401	0.79	+0.9
2,886,083	+		Sama_2401	0.82	+0.4
2,886,133	-		Sama_2401	0.85	-2.7
2,886,162	+		Sama_2401	0.87	-0.4
2,886,162	+		Sama_2401	0.87	-1.9
2,886,162	+		Sama_2401	0.87	-0.5
2,886,162	+		Sama_2401	0.87	-0.4
2,886,163	-		Sama_2401	0.87	-0.3
2,886,163	-		Sama_2401	0.87	+1.1
2,886,163	-		Sama_2401	0.87	-2.1
2,886,163	-		Sama_2401	0.87	-0.1
2,886,178	+		Sama_2401	0.88	-1.2
2,886,181	+		Sama_2401	0.88	-1.8
2,886,182	-		Sama_2401	0.88	+1.2
2,886,182	-		Sama_2401	0.88	-2.4
2,886,182	-		Sama_2401	0.88	+2.2
2,886,240	+				+0.0
2,886,241	-				-1.6
2,886,241	-				-2.5
2,886,241	-				-0.2
2,886,241	-				+1.5
2,886,286	+				-2.0
2,886,436	+		Sama_2402	0.19	-0.5
2,886,436	+		Sama_2402	0.19	-1.8
2,886,436	+		Sama_2402	0.19	-3.1
2,886,436	+		Sama_2402	0.19	+1.6
2,886,437	-		Sama_2402	0.19	-2.0
2,886,437	-		Sama_2402	0.19	+0.3
2,886,437	-		Sama_2402	0.19	-0.6
2,886,437	-		Sama_2402	0.19	+1.5
2,886,437	-		Sama_2402	0.19	-1.8
2,886,437	-		Sama_2402	0.19	-0.1
2,886,437	-		Sama_2402	0.19	-1.9
2,886,443	+		Sama_2402	0.21	-2.1
2,886,444	-		Sama_2402	0.21	+0.3
2,886,480	+		Sama_2402	0.31	-1.6
2,886,480	+		Sama_2402	0.31	-1.0
2,886,480	+		Sama_2402	0.31	+0.4
2,886,480	+		Sama_2402	0.31	-0.1
2,886,480	+		Sama_2402	0.31	+0.5
2,886,481	-		Sama_2402	0.31	+1.0
2,886,484	+		Sama_2402	0.32	+0.8
2,886,484	+		Sama_2402	0.32	-0.4
2,886,484	+		Sama_2402	0.32	-0.2
2,886,485	-		Sama_2402	0.32	+0.7
2,886,485	-		Sama_2402	0.32	+0.7
2,886,571	+		Sama_2402	0.55	-1.6
2,886,571	+		Sama_2402	0.55	+0.5
2,886,571	+		Sama_2402	0.55	-0.3
2,886,572	-		Sama_2402	0.56	+1.9
2,886,572	-		Sama_2402	0.56	+0.9
2,886,693	+		Sama_2402	0.88	-2.7
2,886,744	-				+0.9
2,886,748	+				+0.5
2,886,748	+				-0.1
2,886,748	+				+0.1
2,886,748	+				-0.8
2,886,748	+				-1.4
2,886,748	+				+0.3
2,886,748	+				+0.1
2,886,748	+				-1.2
2,886,748	+				+1.1
2,886,748	+				-0.1
2,886,749	-				+1.2
2,886,749	-				-0.5
2,886,749	-				-0.0
2,886,749	-				-1.5
2,886,749	-				+0.0
2,886,749	-				+0.7
2,886,749	-				-1.1
2,886,749	-				-0.5
2,886,749	-				-1.9
2,886,749	-				-1.7
2,886,749	-				-2.4
2,886,749	-				+1.9
2,886,749	-				+0.4
2,886,774	+				-0.1
2,886,775	-				-1.3
2,886,845	+				-1.2
2,886,846	-				-0.2
2,886,898	+		Sama_2403	0.14	+0.3
2,886,898	+		Sama_2403	0.14	-0.3
2,886,899	-		Sama_2403	0.14	-0.9
2,886,919	+		Sama_2403	0.16	+0.5
2,886,974	+		Sama_2403	0.21	-1.2
2,886,974	+		Sama_2403	0.21	-1.2
2,886,974	+		Sama_2403	0.21	+0.5
2,886,975	-		Sama_2403	0.21	+0.6
2,886,975	-		Sama_2403	0.21	+0.3
2,886,975	-		Sama_2403	0.21	-0.4
2,886,975	-		Sama_2403	0.21	+1.3
2,886,975	-		Sama_2403	0.21	+0.4
2,886,975	-		Sama_2403	0.21	+1.3
2,886,975	-		Sama_2403	0.21	-0.9
2,887,054	+		Sama_2403	0.29	-1.2
2,887,055	-		Sama_2403	0.29	-0.9
2,887,145	+		Sama_2403	0.38	-0.6
2,887,145	+		Sama_2403	0.38	+0.7
2,887,145	+		Sama_2403	0.38	-2.0
2,887,145	+		Sama_2403	0.38	+0.3
2,887,145	+		Sama_2403	0.38	-0.5
2,887,145	+		Sama_2403	0.38	+0.9
2,887,145	+		Sama_2403	0.38	+0.6
2,887,145	+		Sama_2403	0.38	+0.4
2,887,145	+		Sama_2403	0.38	+1.3
2,887,145	+		Sama_2403	0.38	+1.1
2,887,146	-		Sama_2403	0.38	+1.3
2,887,146	-		Sama_2403	0.38	-0.7
2,887,146	-		Sama_2403	0.38	+0.8
2,887,146	-		Sama_2403	0.38	-1.4
2,887,205	+		Sama_2403	0.43	-0.3
2,887,205	+		Sama_2403	0.43	-0.2
2,887,262	-		Sama_2403	0.49	+0.8
2,887,262	-		Sama_2403	0.49	+1.0
2,887,262	-		Sama_2403	0.49	-0.1
2,887,262	-		Sama_2403	0.49	-0.1
2,887,265	+		Sama_2403	0.49	-2.5
2,887,265	+		Sama_2403	0.49	-1.8
2,887,265	+		Sama_2403	0.49	-1.0
2,887,265	+		Sama_2403	0.49	-0.5
2,887,265	+		Sama_2403	0.49	-1.2
2,887,265	+		Sama_2403	0.49	-1.2
2,887,265	+		Sama_2403	0.49	-0.3
2,887,265	+		Sama_2403	0.49	+0.5
2,887,265	+		Sama_2403	0.49	-2.3
2,887,265	+		Sama_2403	0.49	+0.8
2,887,265	+		Sama_2403	0.49	-3.0
2,887,265	+		Sama_2403	0.49	-1.2
2,887,266	-		Sama_2403	0.49	-0.5
2,887,266	-		Sama_2403	0.49	+0.8
2,887,266	-		Sama_2403	0.49	-1.5
2,887,266	-		Sama_2403	0.49	-1.1
2,887,266	-		Sama_2403	0.49	-0.5
2,887,266	-		Sama_2403	0.49	+0.4
2,887,266	-		Sama_2403	0.49	-0.9
2,887,266	-		Sama_2403	0.49	-1.3
2,887,266	-		Sama_2403	0.49	+1.6
2,887,266	-		Sama_2403	0.49	-0.6
2,887,266	-		Sama_2403	0.49	-2.8
2,887,266	-		Sama_2403	0.49	-0.4
2,887,304	+		Sama_2403	0.53	+0.9
2,887,304	+		Sama_2403	0.53	-1.4
2,887,304	+		Sama_2403	0.53	+0.2
2,887,304	+		Sama_2403	0.53	-0.4
2,887,305	-		Sama_2403	0.53	-0.6
2,887,322	+		Sama_2403	0.54	+0.3
2,887,322	+		Sama_2403	0.54	+0.1
2,887,323	-		Sama_2403	0.54	-0.5
2,887,323	-		Sama_2403	0.54	-0.9
2,887,323	-		Sama_2403	0.54	+0.3
2,887,323	-		Sama_2403	0.54	-0.6
2,887,323	-		Sama_2403	0.54	-0.1
2,887,330	+		Sama_2403	0.55	-1.8