Experiment: Putrescine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_2228 and Sama_2229 are separated by 124 nucleotides Sama_2229 and Sama_2230 overlap by 4 nucleotides Sama_2230 and Sama_2231 are separated by 139 nucleotides
Sama_2228: Sama_2228 - decaheme cytochrome c (RefSeq), at 2,691,526 to 2,693,793
_2228
Sama_2229: Sama_2229 - hypothetical protein (RefSeq), at 2,693,918 to 2,694,610
_2229
Sama_2230: Sama_2230 - hypothetical protein (RefSeq), at 2,694,607 to 2,695,344
_2230
Sama_2231: Sama_2231 - glucokinase (EC 2.7.1.2) (from data) , at 2,695,484 to 2,696,383
_2231
Position (kb)
2693
2694
2695 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2692.926 kb on + strand, within Sama_2228 at 2692.943 kb on + strand, within Sama_2228 at 2693.011 kb on + strand, within Sama_2228 at 2693.011 kb on + strand, within Sama_2228 at 2693.012 kb on - strand, within Sama_2228 at 2693.033 kb on + strand, within Sama_2228 at 2693.033 kb on + strand, within Sama_2228 at 2693.034 kb on - strand, within Sama_2228 at 2693.077 kb on + strand, within Sama_2228 at 2693.087 kb on + strand, within Sama_2228 at 2693.088 kb on - strand, within Sama_2228 at 2693.088 kb on - strand, within Sama_2228 at 2693.106 kb on + strand, within Sama_2228 at 2693.110 kb on + strand, within Sama_2228 at 2693.110 kb on + strand, within Sama_2228 at 2693.111 kb on - strand, within Sama_2228 at 2693.111 kb on - strand, within Sama_2228 at 2693.113 kb on + strand, within Sama_2228 at 2693.113 kb on + strand, within Sama_2228 at 2693.113 kb on + strand, within Sama_2228 at 2693.113 kb on + strand, within Sama_2228 at 2693.114 kb on - strand, within Sama_2228 at 2693.114 kb on - strand, within Sama_2228 at 2693.197 kb on - strand, within Sama_2228 at 2693.211 kb on + strand, within Sama_2228 at 2693.211 kb on + strand, within Sama_2228 at 2693.265 kb on + strand, within Sama_2228 at 2693.266 kb on - strand, within Sama_2228 at 2693.266 kb on - strand, within Sama_2228 at 2693.266 kb on - strand, within Sama_2228 at 2693.287 kb on + strand, within Sama_2228 at 2693.288 kb on - strand, within Sama_2228 at 2693.299 kb on + strand, within Sama_2228 at 2693.299 kb on + strand, within Sama_2228 at 2693.300 kb on - strand, within Sama_2228 at 2693.300 kb on - strand, within Sama_2228 at 2693.318 kb on - strand, within Sama_2228 at 2693.318 kb on - strand, within Sama_2228 at 2693.381 kb on - strand, within Sama_2228 at 2693.381 kb on - strand, within Sama_2228 at 2693.447 kb on - strand, within Sama_2228 at 2693.454 kb on + strand, within Sama_2228 at 2693.454 kb on + strand, within Sama_2228 at 2693.454 kb on + strand, within Sama_2228 at 2693.455 kb on - strand, within Sama_2228 at 2693.504 kb on + strand, within Sama_2228 at 2693.504 kb on + strand, within Sama_2228 at 2693.504 kb on + strand, within Sama_2228 at 2693.504 kb on + strand, within Sama_2228 at 2693.504 kb on + strand, within Sama_2228 at 2693.505 kb on - strand, within Sama_2228 at 2693.505 kb on - strand, within Sama_2228 at 2693.505 kb on - strand, within Sama_2228 at 2693.505 kb on - strand, within Sama_2228 at 2693.505 kb on - strand, within Sama_2228 at 2693.505 kb on - strand, within Sama_2228 at 2693.505 kb on - strand, within Sama_2228 at 2693.559 kb on + strand, within Sama_2228 at 2693.590 kb on + strand at 2693.590 kb on + strand at 2693.590 kb on + strand at 2693.591 kb on - strand at 2693.591 kb on - strand at 2693.591 kb on - strand at 2693.591 kb on - strand at 2693.591 kb on - strand at 2693.591 kb on - strand at 2693.591 kb on - strand at 2693.619 kb on + strand at 2693.619 kb on + strand at 2693.620 kb on - strand at 2693.677 kb on + strand at 2693.677 kb on + strand at 2693.677 kb on + strand at 2693.677 kb on + strand at 2693.749 kb on - strand at 2693.755 kb on + strand at 2693.766 kb on + strand at 2693.791 kb on + strand at 2693.887 kb on + strand at 2693.887 kb on + strand at 2693.893 kb on + strand at 2693.893 kb on + strand at 2693.894 kb on - strand at 2693.894 kb on - strand at 2693.906 kb on + strand at 2693.929 kb on + strand at 2693.929 kb on + strand at 2693.929 kb on + strand at 2693.930 kb on - strand at 2693.930 kb on - strand at 2694.014 kb on - strand, within Sama_2229 at 2694.014 kb on - strand, within Sama_2229 at 2694.015 kb on + strand, within Sama_2229 at 2694.015 kb on + strand, within Sama_2229 at 2694.015 kb on + strand, within Sama_2229 at 2694.015 kb on + strand, within Sama_2229 at 2694.015 kb on + strand, within Sama_2229 at 2694.015 kb on + strand, within Sama_2229 at 2694.015 kb on + strand, within Sama_2229 at 2694.015 kb on + strand, within Sama_2229 at 2694.015 kb on + strand, within Sama_2229 at 2694.015 kb on + strand, within Sama_2229 at 2694.016 kb on - strand, within Sama_2229 at 2694.016 kb on - strand, within Sama_2229 at 2694.016 kb on - strand, within Sama_2229 at 2694.016 kb on - strand, within Sama_2229 at 2694.016 kb on - strand, within Sama_2229 at 2694.016 kb on - strand, within Sama_2229 at 2694.016 kb on - strand, within Sama_2229 at 2694.025 kb on - strand, within Sama_2229 at 2694.037 kb on + strand, within Sama_2229 at 2694.226 kb on + strand, within Sama_2229 at 2694.226 kb on + strand, within Sama_2229 at 2694.226 kb on + strand, within Sama_2229 at 2694.227 kb on - strand, within Sama_2229 at 2694.229 kb on + strand, within Sama_2229 at 2694.230 kb on - strand, within Sama_2229 at 2694.230 kb on - strand, within Sama_2229 at 2694.230 kb on - strand, within Sama_2229 at 2694.230 kb on - strand, within Sama_2229 at 2694.230 kb on - strand, within Sama_2229 at 2694.259 kb on + strand, within Sama_2229 at 2694.302 kb on + strand, within Sama_2229 at 2694.303 kb on - strand, within Sama_2229 at 2694.303 kb on - strand, within Sama_2229 at 2694.359 kb on - strand, within Sama_2229 at 2694.359 kb on - strand, within Sama_2229 at 2694.359 kb on - strand, within Sama_2229 at 2694.457 kb on + strand, within Sama_2229 at 2694.458 kb on - strand, within Sama_2229 at 2694.461 kb on + strand, within Sama_2229 at 2694.461 kb on + strand, within Sama_2229 at 2694.461 kb on + strand, within Sama_2229 at 2694.461 kb on + strand, within Sama_2229 at 2694.461 kb on + strand, within Sama_2229 at 2694.462 kb on - strand, within Sama_2229 at 2694.462 kb on - strand, within Sama_2229 at 2694.462 kb on - strand, within Sama_2229 at 2694.536 kb on + strand, within Sama_2229 at 2694.536 kb on + strand, within Sama_2229 at 2694.537 kb on - strand, within Sama_2229 at 2694.537 kb on - strand, within Sama_2229 at 2694.537 kb on - strand, within Sama_2229 at 2694.537 kb on - strand, within Sama_2229 at 2694.540 kb on - strand, within Sama_2229 at 2694.540 kb on - strand, within Sama_2229 at 2694.647 kb on + strand at 2694.647 kb on + strand at 2694.647 kb on + strand at 2694.647 kb on + strand at 2694.648 kb on - strand at 2694.648 kb on - strand at 2694.648 kb on - strand at 2694.648 kb on - strand at 2694.648 kb on - strand at 2694.691 kb on + strand, within Sama_2230 at 2694.787 kb on - strand, within Sama_2230 at 2694.787 kb on - strand, within Sama_2230 at 2694.787 kb on - strand, within Sama_2230 at 2694.812 kb on - strand, within Sama_2230 at 2694.812 kb on - strand, within Sama_2230 at 2694.839 kb on - strand, within Sama_2230 at 2694.839 kb on - strand, within Sama_2230 at 2694.887 kb on - strand, within Sama_2230 at 2694.956 kb on + strand, within Sama_2230 at 2694.956 kb on + strand, within Sama_2230 at 2694.956 kb on + strand, within Sama_2230 at 2694.956 kb on + strand, within Sama_2230 at 2694.956 kb on + strand, within Sama_2230 at 2694.957 kb on - strand, within Sama_2230 at 2694.957 kb on - strand, within Sama_2230 at 2694.957 kb on - strand, within Sama_2230 at 2695.060 kb on + strand, within Sama_2230 at 2695.061 kb on - strand, within Sama_2230 at 2695.111 kb on + strand, within Sama_2230 at 2695.149 kb on - strand, within Sama_2230 at 2695.171 kb on + strand, within Sama_2230 at 2695.222 kb on + strand, within Sama_2230 at 2695.222 kb on + strand, within Sama_2230 at 2695.223 kb on - strand, within Sama_2230 at 2695.320 kb on - strand at 2695.349 kb on - strand at 2695.360 kb on + strand at 2695.383 kb on - strand at 2695.537 kb on - strand at 2695.537 kb on - strand at 2695.547 kb on + strand at 2695.548 kb on - strand at 2695.548 kb on - strand at 2695.581 kb on + strand, within Sama_2231 at 2695.581 kb on + strand, within Sama_2231 at 2695.581 kb on + strand, within Sama_2231 at 2695.582 kb on - strand, within Sama_2231 at 2695.582 kb on - strand, within Sama_2231 at 2695.582 kb on - strand, within Sama_2231 at 2695.582 kb on - strand, within Sama_2231 at 2695.582 kb on - strand, within Sama_2231 at 2695.582 kb on - strand, within Sama_2231
Per-strain Table
Position Strand Gene LocusTag Fraction Putrescine (N) remove 2,692,926 + Sama_2228 0.62 -1.0 2,692,943 + Sama_2228 0.62 -1.3 2,693,011 + Sama_2228 0.65 -0.1 2,693,011 + Sama_2228 0.65 -0.6 2,693,012 - Sama_2228 0.66 +0.5 2,693,033 + Sama_2228 0.66 -0.8 2,693,033 + Sama_2228 0.66 +1.5 2,693,034 - Sama_2228 0.66 +0.9 2,693,077 + Sama_2228 0.68 -0.8 2,693,087 + Sama_2228 0.69 -0.8 2,693,088 - Sama_2228 0.69 -1.8 2,693,088 - Sama_2228 0.69 +1.0 2,693,106 + Sama_2228 0.70 +0.4 2,693,110 + Sama_2228 0.70 -0.9 2,693,110 + Sama_2228 0.70 -1.0 2,693,111 - Sama_2228 0.70 -1.6 2,693,111 - Sama_2228 0.70 +1.7 2,693,113 + Sama_2228 0.70 -2.1 2,693,113 + Sama_2228 0.70 -0.3 2,693,113 + Sama_2228 0.70 -1.1 2,693,113 + Sama_2228 0.70 -0.6 2,693,114 - Sama_2228 0.70 -1.3 2,693,114 - Sama_2228 0.70 -0.8 2,693,197 - Sama_2228 0.74 +0.1 2,693,211 + Sama_2228 0.74 -2.4 2,693,211 + Sama_2228 0.74 +0.4 2,693,265 + Sama_2228 0.77 -0.3 2,693,266 - Sama_2228 0.77 -0.8 2,693,266 - Sama_2228 0.77 -1.4 2,693,266 - Sama_2228 0.77 +0.7 2,693,287 + Sama_2228 0.78 -0.7 2,693,288 - Sama_2228 0.78 -0.6 2,693,299 + Sama_2228 0.78 +0.1 2,693,299 + Sama_2228 0.78 -0.5 2,693,300 - Sama_2228 0.78 -1.1 2,693,300 - Sama_2228 0.78 +0.9 2,693,318 - Sama_2228 0.79 -1.1 2,693,318 - Sama_2228 0.79 -0.1 2,693,381 - Sama_2228 0.82 -1.7 2,693,381 - Sama_2228 0.82 -1.1 2,693,447 - Sama_2228 0.85 +0.6 2,693,454 + Sama_2228 0.85 -0.0 2,693,454 + Sama_2228 0.85 -0.7 2,693,454 + Sama_2228 0.85 -0.1 2,693,455 - Sama_2228 0.85 +0.2 2,693,504 + Sama_2228 0.87 -0.8 2,693,504 + Sama_2228 0.87 +0.6 2,693,504 + Sama_2228 0.87 -0.5 2,693,504 + Sama_2228 0.87 -0.5 2,693,504 + Sama_2228 0.87 -0.7 2,693,505 - Sama_2228 0.87 -1.2 2,693,505 - Sama_2228 0.87 +1.3 2,693,505 - Sama_2228 0.87 -1.0 2,693,505 - Sama_2228 0.87 -1.3 2,693,505 - Sama_2228 0.87 +0.2 2,693,505 - Sama_2228 0.87 -2.0 2,693,505 - Sama_2228 0.87 +0.2 2,693,559 + Sama_2228 0.90 +1.3 2,693,590 + -2.3 2,693,590 + +0.2 2,693,590 + +0.7 2,693,591 - +0.6 2,693,591 - -1.0 2,693,591 - -0.5 2,693,591 - -0.5 2,693,591 - +0.9 2,693,591 - -2.0 2,693,591 - +0.7 2,693,619 + +2.3 2,693,619 + -0.1 2,693,620 - +1.5 2,693,677 + -0.4 2,693,677 + -0.1 2,693,677 + -0.1 2,693,677 + -0.4 2,693,749 - -0.8 2,693,755 + -0.4 2,693,766 + -0.1 2,693,791 + +0.2 2,693,887 + +0.8 2,693,887 + -0.1 2,693,893 + +0.2 2,693,893 + +0.1 2,693,894 - -1.0 2,693,894 - +0.0 2,693,906 + +0.5 2,693,929 + -1.2 2,693,929 + +0.3 2,693,929 + -3.6 2,693,930 - -1.0 2,693,930 - +1.0 2,694,014 - Sama_2229 0.14 +0.3 2,694,014 - Sama_2229 0.14 -0.8 2,694,015 + Sama_2229 0.14 -0.9 2,694,015 + Sama_2229 0.14 -0.7 2,694,015 + Sama_2229 0.14 -0.3 2,694,015 + Sama_2229 0.14 -0.8 2,694,015 + Sama_2229 0.14 -1.5 2,694,015 + Sama_2229 0.14 -1.4 2,694,015 + Sama_2229 0.14 +0.3 2,694,015 + Sama_2229 0.14 -0.7 2,694,015 + Sama_2229 0.14 +1.5 2,694,015 + Sama_2229 0.14 -0.8 2,694,016 - Sama_2229 0.14 +0.0 2,694,016 - Sama_2229 0.14 -1.6 2,694,016 - Sama_2229 0.14 -0.7 2,694,016 - Sama_2229 0.14 -1.0 2,694,016 - Sama_2229 0.14 -1.3 2,694,016 - Sama_2229 0.14 +1.0 2,694,016 - Sama_2229 0.14 +0.5 2,694,025 - Sama_2229 0.15 -0.2 2,694,037 + Sama_2229 0.17 +1.5 2,694,226 + Sama_2229 0.44 -1.3 2,694,226 + Sama_2229 0.44 -1.2 2,694,226 + Sama_2229 0.44 -0.7 2,694,227 - Sama_2229 0.45 +0.5 2,694,229 + Sama_2229 0.45 -0.3 2,694,230 - Sama_2229 0.45 -0.4 2,694,230 - Sama_2229 0.45 +0.5 2,694,230 - Sama_2229 0.45 -0.1 2,694,230 - Sama_2229 0.45 +0.3 2,694,230 - Sama_2229 0.45 +0.7 2,694,259 + Sama_2229 0.49 -0.8 2,694,302 + Sama_2229 0.55 -1.1 2,694,303 - Sama_2229 0.56 -1.3 2,694,303 - Sama_2229 0.56 -0.7 2,694,359 - Sama_2229 0.64 -0.0 2,694,359 - Sama_2229 0.64 -0.7 2,694,359 - Sama_2229 0.64 +1.6 2,694,457 + Sama_2229 0.78 -1.6 2,694,458 - Sama_2229 0.78 -1.1 2,694,461 + Sama_2229 0.78 +0.2 2,694,461 + Sama_2229 0.78 +0.3 2,694,461 + Sama_2229 0.78 +0.9 2,694,461 + Sama_2229 0.78 +0.0 2,694,461 + Sama_2229 0.78 +0.7 2,694,462 - Sama_2229 0.78 -0.5 2,694,462 - Sama_2229 0.78 -1.4 2,694,462 - Sama_2229 0.78 -1.0 2,694,536 + Sama_2229 0.89 -1.1 2,694,536 + Sama_2229 0.89 +0.3 2,694,537 - Sama_2229 0.89 -0.0 2,694,537 - Sama_2229 0.89 -0.1 2,694,537 - Sama_2229 0.89 -0.7 2,694,537 - Sama_2229 0.89 +0.3 2,694,540 - Sama_2229 0.90 +0.0 2,694,540 - Sama_2229 0.90 -0.3 2,694,647 + +1.2 2,694,647 + +1.5 2,694,647 + +1.6 2,694,647 + +0.8 2,694,648 - -0.9 2,694,648 - +0.2 2,694,648 - -0.3 2,694,648 - -0.9 2,694,648 - +0.1 2,694,691 + Sama_2230 0.11 +0.0 2,694,787 - Sama_2230 0.24 -1.0 2,694,787 - Sama_2230 0.24 +0.4 2,694,787 - Sama_2230 0.24 -0.4 2,694,812 - Sama_2230 0.28 +1.4 2,694,812 - Sama_2230 0.28 +0.8 2,694,839 - Sama_2230 0.31 -1.1 2,694,839 - Sama_2230 0.31 +1.2 2,694,887 - Sama_2230 0.38 +1.0 2,694,956 + Sama_2230 0.47 +0.3 2,694,956 + Sama_2230 0.47 -1.7 2,694,956 + Sama_2230 0.47 -1.9 2,694,956 + Sama_2230 0.47 -2.4 2,694,956 + Sama_2230 0.47 +0.0 2,694,957 - Sama_2230 0.47 +0.1 2,694,957 - Sama_2230 0.47 -1.9 2,694,957 - Sama_2230 0.47 -1.4 2,695,060 + Sama_2230 0.61 -1.6 2,695,061 - Sama_2230 0.62 -0.6 2,695,111 + Sama_2230 0.68 +2.1 2,695,149 - Sama_2230 0.73 +0.6 2,695,171 + Sama_2230 0.76 -1.0 2,695,222 + Sama_2230 0.83 +0.1 2,695,222 + Sama_2230 0.83 -0.7 2,695,223 - Sama_2230 0.83 +0.7 2,695,320 - +0.6 2,695,349 - -0.7 2,695,360 + -1.0 2,695,383 - -0.2 2,695,537 - -0.1 2,695,537 - -0.4 2,695,547 + -1.1 2,695,548 - +0.9 2,695,548 - -0.3 2,695,581 + Sama_2231 0.11 -0.4 2,695,581 + Sama_2231 0.11 -1.1 2,695,581 + Sama_2231 0.11 -0.4 2,695,582 - Sama_2231 0.11 +2.2 2,695,582 - Sama_2231 0.11 -0.9 2,695,582 - Sama_2231 0.11 -0.2 2,695,582 - Sama_2231 0.11 -3.0 2,695,582 - Sama_2231 0.11 -0.8 2,695,582 - Sama_2231 0.11 +0.4
Or see this region's nucleotide sequence