Strain Fitness in Shewanella amazonensis SB2B around Sama_1319

Experiment: Putrescine (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Putrescine (N)
1,602,279	-		Sama_1317	0.86	-1.6
1,602,279	-		Sama_1317	0.86	+0.5
1,602,296	+		Sama_1317	0.88	-0.3
1,602,321	+		Sama_1317	0.90	+0.3
1,602,321	+		Sama_1317	0.90	-1.2
1,602,349	-				-0.3
1,602,366	+				+0.5
1,602,367	-				+0.3
1,602,442	-				-0.8
1,602,442	-				-0.3
1,602,472	+				+0.2
1,602,472	+				+1.2
1,602,473	-				-1.4
1,602,500	+				+0.1
1,602,500	+				-0.2
1,602,500	+				+0.1
1,602,500	+				+1.2
1,602,501	-				+1.5
1,602,567	-				+0.1
1,602,567	-				+0.8
1,603,182	-				-2.9
1,603,201	-				-0.3
1,603,257	-				+0.5
1,603,374	+				+0.3
1,603,374	+				-0.6
1,603,375	-				+1.2
1,603,417	-		Sama_1319	0.12	-0.1
1,603,417	-		Sama_1319	0.12	+2.6
1,603,559	+		Sama_1319	0.23	-0.3
1,603,559	+		Sama_1319	0.23	-0.0
1,603,560	-		Sama_1319	0.23	-1.4
1,603,588	+		Sama_1319	0.25	+0.9
1,603,588	+		Sama_1319	0.25	-0.4
1,603,589	-		Sama_1319	0.25	+0.2
1,603,600	-		Sama_1319	0.26	-1.9
1,603,600	-		Sama_1319	0.26	-0.0
1,603,613	-		Sama_1319	0.27	+0.8
1,603,613	-		Sama_1319	0.27	-2.5
1,603,624	-		Sama_1319	0.28	+0.9
1,603,624	-		Sama_1319	0.28	-0.3
1,603,627	-		Sama_1319	0.28	-2.1
1,603,627	-		Sama_1319	0.28	-1.8
1,603,627	-		Sama_1319	0.28	-0.3
1,603,627	-		Sama_1319	0.28	-0.9
1,603,627	-		Sama_1319	0.28	+1.5
1,603,627	-		Sama_1319	0.28	+0.2
1,603,740	+		Sama_1319	0.37	+0.9
1,603,756	-		Sama_1319	0.38	-1.7
1,603,786	-		Sama_1319	0.40	-0.0
1,603,824	+		Sama_1319	0.43	-0.3
1,603,882	-		Sama_1319	0.48	-0.1
1,603,882	-		Sama_1319	0.48	-0.4
1,603,882	-		Sama_1319	0.48	+0.6
1,603,882	-		Sama_1319	0.48	+1.5
1,603,886	+		Sama_1319	0.48	-0.9
1,603,886	+		Sama_1319	0.48	+0.5
1,603,887	-		Sama_1319	0.48	+0.3
1,603,890	+		Sama_1319	0.48	+3.0
1,603,891	-		Sama_1319	0.48	+1.1
1,603,891	-		Sama_1319	0.48	-0.9
1,603,891	-		Sama_1319	0.48	+0.1
1,604,143	+		Sama_1319	0.68	-2.3
1,604,144	-		Sama_1319	0.68	-1.8
1,604,190	-		Sama_1319	0.71	-0.2
1,604,286	-		Sama_1319	0.78	+1.1
1,604,317	+		Sama_1319	0.81	+1.0
1,604,365	-		Sama_1319	0.84	-0.8
1,604,404	-		Sama_1319	0.87	-2.1
1,604,404	-		Sama_1319	0.87	-0.9
1,604,407	+		Sama_1319	0.88	+1.0
1,604,407	+		Sama_1319	0.88	+0.5
1,604,407	+		Sama_1319	0.88	+0.7
1,604,408	-		Sama_1319	0.88	+0.9
1,604,408	-		Sama_1319	0.88	+1.3
1,604,408	-		Sama_1319	0.88	+0.6
1,604,408	-		Sama_1319	0.88	-0.2
1,604,408	-		Sama_1319	0.88	+2.0
1,604,410	-		Sama_1319	0.88	+0.1
1,604,410	-		Sama_1319	0.88	-0.1
1,604,410	-		Sama_1319	0.88	-1.0
1,604,417	-		Sama_1319	0.88	-0.8
1,604,445	-				-0.4
1,604,445	-				-0.6
1,604,479	-				+1.2
1,604,479	-				-1.4
1,604,522	-				-0.3
1,604,653	-				+0.6
1,604,682	+				+0.6
1,604,695	+				-0.3
1,604,698	+				-1.9
1,604,708	-				+0.5
1,604,722	+				-0.2
1,604,722	+				+0.2
1,604,722	+				-0.2
1,604,722	+				-0.1
1,604,733	+				-0.6
1,604,733	+				+0.3
1,604,733	+				-1.4
1,604,735	+				-1.9
1,604,735	+				-0.5
1,604,735	+				-2.1
1,604,735	+				-1.2
1,604,735	+				+0.8
1,604,736	-				-1.8
1,604,736	-				-0.5
1,604,736	-				+1.8
1,604,739	+				-2.6
1,604,739	+				+1.8
1,604,739	+				+0.1
1,604,739	+				-0.5
1,604,740	-				-0.4
1,604,740	-				+0.2
1,604,755	+				+0.6
1,604,755	+				-0.9
1,604,755	+				-0.3
1,604,755	+				+1.6
1,604,759	+				+0.5
1,604,760	-				-2.9
1,604,765	-				-0.1
1,604,768	+				-0.3
1,604,774	-				+0.7
1,604,810	-				+0.9
1,604,836	+				+1.1
1,604,837	-				+0.1
1,604,837	-				+0.9
1,604,837	-				+0.0
1,604,839	+				+0.6
1,604,839	+				-1.6
1,604,842	+				+0.1
1,604,843	-				-0.8
1,604,873	+				-0.0
1,604,894	+				-1.5
1,604,915	+				-1.2
1,604,915	+				-1.8
1,604,930	+				+0.2
1,604,930	+				+2.4
1,604,932	+				+0.9
1,604,932	+				-0.0
1,604,933	-				-2.0
1,604,939	+				-0.4
1,604,939	+				-1.3
1,604,965	+				+1.1
1,604,965	+				-0.7
1,604,965	+				+0.2
1,604,965	+				+0.2
1,604,966	-				-1.4
1,604,966	-				+0.3
1,604,966	-				-0.8
1,604,966	-				+0.3
1,604,969	+				+2.0
1,604,969	+				-0.8
1,604,969	+				+1.7
1,604,970	-				-1.8
1,604,970	-				-0.6
1,604,970	-				+0.8
1,605,051	-		Sama_1320	0.11	-0.7
1,605,061	+		Sama_1320	0.11	+0.1
1,605,061	+		Sama_1320	0.11	+0.5
1,605,071	+		Sama_1320	0.11	+0.1
1,605,119	+		Sama_1320	0.13	-0.8
1,605,119	+		Sama_1320	0.13	-0.2
1,605,120	-		Sama_1320	0.13	+0.2
1,605,120	-		Sama_1320	0.13	+2.1
1,605,120	-		Sama_1320	0.13	+0.1
1,605,120	-		Sama_1320	0.13	+2.4
1,605,140	+		Sama_1320	0.14	-0.4
1,605,140	+		Sama_1320	0.14	+1.5
1,605,207	-		Sama_1320	0.17	-0.9
1,605,267	-		Sama_1320	0.19	-1.3
1,605,341	+		Sama_1320	0.22	-0.3
1,605,342	-		Sama_1320	0.22	-0.5
1,605,362	+		Sama_1320	0.23	-0.4
1,605,362	+		Sama_1320	0.23	-1.2
1,605,362	+		Sama_1320	0.23	+0.9
1,605,363	-		Sama_1320	0.23	-0.2
1,605,363	-		Sama_1320	0.23	-0.7
1,605,363	-		Sama_1320	0.23	-0.3
1,605,408	-		Sama_1320	0.25	-0.6
1,605,437	+		Sama_1320	0.26	+0.4
1,605,441	+		Sama_1320	0.26	+1.0
1,605,441	+		Sama_1320	0.26	-0.5
1,605,441	+		Sama_1320	0.26	-0.5
1,605,441	+		Sama_1320	0.26	-0.9
1,605,442	-		Sama_1320	0.26	+1.3
1,605,474	-		Sama_1320	0.28	+0.4