Strain Fitness in Shewanella amazonensis SB2B around Sama_0923

Experiment: Putrescine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_0922 and Sama_0923 are separated by 58 nucleotidesSama_0923 and ileS are separated by 42 nucleotides Sama_0922: Sama_0922 - integral membrane protein MviN (RefSeq), at 1,113,812 to 1,115,377 _0922 Sama_0923: Sama_0923 - riboflavin biosynthesis protein RibF (RefSeq), at 1,115,436 to 1,116,371 _0923 Sama_0924: ileS - isoleucyl-tRNA synthetase (RefSeq), at 1,116,414 to 1,119,236 ileS Position (kb) 1115 1116 1117Strain fitness (log2 ratio) -3 -2 -1 0 1at 1115.341 kb on + strandat 1115.341 kb on + strandat 1115.342 kb on - strandat 1115.397 kb on + strandat 1115.397 kb on + strandat 1115.397 kb on + strandat 1115.397 kb on + strandat 1115.397 kb on + strandat 1115.397 kb on + strandat 1115.397 kb on + strandat 1115.397 kb on + strandat 1115.399 kb on + strandat 1115.399 kb on + strandat 1115.399 kb on + strandat 1115.399 kb on + strandat 1115.399 kb on + strandat 1115.399 kb on + strandat 1115.399 kb on + strandat 1115.399 kb on + strandat 1115.399 kb on + strandat 1115.399 kb on + strandat 1115.412 kb on + strandat 1115.412 kb on + strandat 1115.416 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Putrescine (N)
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1,115,341 + -1.0
1,115,341 + +0.3
1,115,342 - -2.4
1,115,397 + -3.2
1,115,397 + +0.5
1,115,397 + -1.2
1,115,397 + +0.0
1,115,397 + -0.4
1,115,397 + +0.8
1,115,397 + -1.2
1,115,397 + -0.7
1,115,399 + -0.2
1,115,399 + -1.1
1,115,399 + -1.1
1,115,399 + -1.0
1,115,399 + -0.5
1,115,399 + +0.6
1,115,399 + -0.9
1,115,399 + -0.1
1,115,399 + +0.1
1,115,399 + -0.2
1,115,412 + +0.3
1,115,412 + -2.6
1,115,416 + -1.7

Or see this region's nucleotide sequence