Experiment: Trisodium citrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_4133 and Dshi_4134 overlap by 4 nucleotides Dshi_4134 and Dshi_4135 overlap by 11 nucleotides Dshi_4135 and Dshi_4136 overlap by 8 nucleotides
Dshi_4133: Dshi_4133 - Oligosaccharide biosynthesis protein Alg14-like protein (RefSeq), at 65,809 to 66,255
_4133
Dshi_4134: Dshi_4134 - Glycosyltransferase 28 domain (RefSeq), at 66,252 to 66,728
_4134
Dshi_4135: Dshi_4135 - hypothetical protein (RefSeq), at 66,718 to 68,040
_4135
Dshi_4136: Dshi_4136 - polysaccharide pyruvyl transferase (RefSeq), at 68,033 to 69,217
_4136
Position (kb) 66
67
68
69 Strain fitness (log2 ratio) -2
-1
0
1 at 65.724 kb on + strand at 65.799 kb on + strand at 65.847 kb on - strand at 65.849 kb on + strand at 65.908 kb on + strand, within Dshi_4133 at 65.931 kb on + strand, within Dshi_4133 at 65.931 kb on + strand, within Dshi_4133 at 65.939 kb on - strand, within Dshi_4133 at 65.989 kb on + strand, within Dshi_4133 at 65.989 kb on + strand, within Dshi_4133 at 65.989 kb on + strand, within Dshi_4133 at 65.997 kb on - strand, within Dshi_4133 at 66.062 kb on - strand, within Dshi_4133 at 66.096 kb on + strand, within Dshi_4133 at 66.368 kb on + strand, within Dshi_4134 at 66.440 kb on + strand, within Dshi_4134 at 66.493 kb on - strand, within Dshi_4134 at 66.914 kb on + strand, within Dshi_4135 at 66.958 kb on + strand, within Dshi_4135 at 67.134 kb on + strand, within Dshi_4135 at 67.188 kb on - strand, within Dshi_4135 at 67.507 kb on + strand, within Dshi_4135 at 67.575 kb on - strand, within Dshi_4135 at 67.630 kb on + strand, within Dshi_4135 at 68.060 kb on + strand at 68.204 kb on + strand, within Dshi_4136 at 68.225 kb on - strand, within Dshi_4136 at 68.587 kb on + strand, within Dshi_4136 at 68.595 kb on - strand, within Dshi_4136 at 68.637 kb on + strand, within Dshi_4136 at 68.787 kb on + strand, within Dshi_4136 at 68.795 kb on - strand, within Dshi_4136 at 68.795 kb on - strand, within Dshi_4136 at 68.853 kb on + strand, within Dshi_4136 at 68.951 kb on - strand, within Dshi_4136 at 68.981 kb on + strand, within Dshi_4136 at 69.034 kb on - strand, within Dshi_4136
Per-strain Table
Position Strand Gene LocusTag Fraction Trisodium citrate (C) remove 65,724 + +0.2 65,799 + +0.3 65,847 - +0.8 65,849 + -0.2 65,908 + Dshi_4133 0.22 -0.7 65,931 + Dshi_4133 0.27 -0.3 65,931 + Dshi_4133 0.27 -1.8 65,939 - Dshi_4133 0.29 +0.9 65,989 + Dshi_4133 0.40 +0.7 65,989 + Dshi_4133 0.40 -0.9 65,989 + Dshi_4133 0.40 -0.7 65,997 - Dshi_4133 0.42 +0.7 66,062 - Dshi_4133 0.57 +0.8 66,096 + Dshi_4133 0.64 +0.3 66,368 + Dshi_4134 0.24 -0.8 66,440 + Dshi_4134 0.39 -1.3 66,493 - Dshi_4134 0.51 -0.1 66,914 + Dshi_4135 0.15 +0.5 66,958 + Dshi_4135 0.18 +0.7 67,134 + Dshi_4135 0.31 +0.1 67,188 - Dshi_4135 0.36 -0.3 67,507 + Dshi_4135 0.60 +0.8 67,575 - Dshi_4135 0.65 +1.0 67,630 + Dshi_4135 0.69 +0.2 68,060 + +1.2 68,204 + Dshi_4136 0.14 +0.2 68,225 - Dshi_4136 0.16 +0.2 68,587 + Dshi_4136 0.47 +0.5 68,595 - Dshi_4136 0.47 +1.5 68,637 + Dshi_4136 0.51 -0.9 68,787 + Dshi_4136 0.64 +0.8 68,795 - Dshi_4136 0.64 -0.0 68,795 - Dshi_4136 0.64 -0.3 68,853 + Dshi_4136 0.69 +0.9 68,951 - Dshi_4136 0.77 -0.8 68,981 + Dshi_4136 0.80 +0.1 69,034 - Dshi_4136 0.84 +0.5
Or see this region's nucleotide sequence