Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1906

Experiment: Trisodium citrate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Trisodium citrate (C)
1,989,572	+		Dshi_1905	0.27	+0.1
1,989,572	+		Dshi_1905	0.27	+1.7
1,989,591	-		Dshi_1905	0.29	-0.4
1,989,645	-		Dshi_1905	0.34	-0.2
1,989,781	-		Dshi_1905	0.46	+0.4
1,989,831	+		Dshi_1905	0.51	-0.7
1,989,838	+		Dshi_1905	0.51	-0.3
1,989,864	-		Dshi_1905	0.54	+0.5
1,989,868	+		Dshi_1905	0.54	-0.1
1,989,876	-		Dshi_1905	0.55	-0.9
1,989,892	+		Dshi_1905	0.56	-0.0
1,989,919	+		Dshi_1905	0.59	-1.2
1,989,919	+		Dshi_1905	0.59	-0.5
1,989,927	-		Dshi_1905	0.59	-0.5
1,989,927	-		Dshi_1905	0.59	+0.1
1,989,927	-		Dshi_1905	0.59	+0.1
1,989,927	-		Dshi_1905	0.59	+0.3
1,989,927	-		Dshi_1905	0.59	+0.1
1,989,927	-		Dshi_1905	0.59	-0.3
1,989,929	+		Dshi_1905	0.60	-0.4
1,989,929	+		Dshi_1905	0.60	+0.7
1,989,929	+		Dshi_1905	0.60	-0.7
1,989,932	-		Dshi_1905	0.60	+0.4
1,989,932	-		Dshi_1905	0.60	+0.3
1,989,933	+		Dshi_1905	0.60	-0.2
1,989,939	-		Dshi_1905	0.61	-0.6
1,989,942	+		Dshi_1905	0.61	-0.3
1,989,955	+		Dshi_1905	0.62	+0.6
1,989,955	+		Dshi_1905	0.62	-0.2
1,989,955	+		Dshi_1905	0.62	-0.1
1,989,955	+		Dshi_1905	0.62	+1.1
1,989,955	+		Dshi_1905	0.62	+0.8
1,989,963	-		Dshi_1905	0.63	-0.2
1,989,963	-		Dshi_1905	0.63	+0.9
1,989,963	-		Dshi_1905	0.63	+1.1
1,989,977	+		Dshi_1905	0.64	+0.2
1,989,993	-		Dshi_1905	0.65	-0.2
1,990,006	+		Dshi_1905	0.67	+1.4
1,990,010	+		Dshi_1905	0.67	+0.1
1,990,012	+		Dshi_1905	0.67	-0.2
1,990,018	-		Dshi_1905	0.68	+0.5
1,990,020	-		Dshi_1905	0.68	+0.3
1,990,022	-		Dshi_1905	0.68	+0.3
1,990,031	-		Dshi_1905	0.69	+0.5
1,990,032	+		Dshi_1905	0.69	-0.8
1,990,041	-		Dshi_1905	0.70	+0.8
1,990,041	-		Dshi_1905	0.70	-1.3
1,990,059	+		Dshi_1905	0.71	+0.0
1,990,067	-		Dshi_1905	0.72	-0.7
1,990,067	-		Dshi_1905	0.72	+0.4
1,990,067	-		Dshi_1905	0.72	+0.0
1,990,067	-		Dshi_1905	0.72	-0.9
1,990,084	+		Dshi_1905	0.74	-0.7
1,990,091	+		Dshi_1905	0.74	-0.5
1,990,091	+		Dshi_1905	0.74	-0.1
1,990,091	+		Dshi_1905	0.74	+0.4
1,990,093	+		Dshi_1905	0.75	-0.4
1,990,098	+		Dshi_1905	0.75	-0.1
1,990,098	-		Dshi_1905	0.75	-2.4
1,990,099	-		Dshi_1905	0.75	-0.1
1,990,099	-		Dshi_1905	0.75	+0.7
1,990,099	-		Dshi_1905	0.75	-0.1
1,990,103	+		Dshi_1905	0.75	+0.2
1,990,105	+		Dshi_1905	0.76	+0.4
1,990,105	+		Dshi_1905	0.76	-0.3
1,990,105	+		Dshi_1905	0.76	-0.4
1,990,105	+		Dshi_1905	0.76	-0.7
1,990,105	+		Dshi_1905	0.76	-0.2
1,990,105	+		Dshi_1905	0.76	-0.3
1,990,105	+		Dshi_1905	0.76	+0.5
1,990,113	-		Dshi_1905	0.76	+0.5
1,990,113	-		Dshi_1905	0.76	+0.1
1,990,113	-		Dshi_1905	0.76	-0.7
1,990,116	+		Dshi_1905	0.77	-0.1
1,990,124	-		Dshi_1905	0.77	-0.0
1,990,124	-		Dshi_1905	0.77	-0.2
1,990,124	-		Dshi_1905	0.77	+1.3
1,990,134	-		Dshi_1905	0.78	-0.3
1,990,142	-		Dshi_1905	0.79	+0.9
1,990,160	+		Dshi_1905	0.81	-0.5
1,990,167	-		Dshi_1905	0.81	+0.3
1,990,178	-		Dshi_1905	0.82	+0.1
1,990,178	-		Dshi_1905	0.82	-0.9
1,990,186	+		Dshi_1905	0.83	+0.0
1,990,186	+		Dshi_1905	0.83	+0.2
1,990,186	+		Dshi_1905	0.83	-0.4
1,990,186	+		Dshi_1905	0.83	-0.4
1,990,186	+		Dshi_1905	0.83	-0.8
1,990,186	+		Dshi_1905	0.83	-0.4
1,990,201	+		Dshi_1905	0.84	+0.6
1,990,205	+		Dshi_1905	0.85	-0.2
1,990,206	+		Dshi_1905	0.85	-0.3
1,990,207	+		Dshi_1905	0.85	-0.9
1,990,256	+		Dshi_1905	0.89	-0.2
1,990,256	+		Dshi_1905	0.89	-0.1
1,990,256	+		Dshi_1905	0.89	-1.1
1,990,263	-				-0.3
1,990,264	-				+0.1
1,990,279	+				-0.3
1,990,279	+				-1.4
1,990,281	-				-0.0
1,990,286	-				+0.2
1,990,287	-				-0.3
1,990,294	-				+0.0
1,990,297	+				-0.3
1,990,297	+				-0.3
1,990,297	+				+0.4
1,990,297	+				-0.2
1,990,297	+				+0.0
1,990,297	+				-0.4
1,990,297	-				+0.4
1,990,297	-				+0.7
1,990,300	-				+0.3
1,990,305	-				-0.6
1,990,305	-				+0.3
1,990,305	-				-0.2
1,990,324	+				-1.0
1,990,329	+				-0.1
1,990,339	+				+1.4
1,990,339	+				-2.6
1,990,345	+				-1.3
1,990,347	-				-1.7
1,990,347	-				+0.1
1,990,347	-				+0.2
1,990,347	-				-0.4
1,990,347	-				+0.1
1,990,353	-				-1.5
1,990,353	-				-0.3
1,990,353	-				+0.2
1,990,381	+				-0.3
1,990,389	-				-0.6
1,990,393	+				+0.0
1,990,399	-				-0.0
1,990,402	+				-0.4
1,990,410	+				-0.2
1,990,415	+				-0.4
1,990,415	+				+0.1
1,990,421	-				-1.0
1,990,423	-				-0.2
1,990,423	-				-0.1
1,990,430	+				+0.8
1,990,432	+				-0.1
1,990,432	+				-0.0
1,990,432	+				+0.1
1,990,438	-				-0.9
1,990,438	-				+0.9
1,990,440	-				+0.2
1,990,451	+				-0.1
1,990,479	+				-0.6
1,990,480	+				-0.0
1,990,486	+				+0.4
1,990,486	-				+0.1
1,990,487	-				-0.2
1,990,491	+				-0.2
1,990,521	+				-0.2
1,990,539	+				+0.8
1,990,539	+				-0.7
1,990,539	+				-0.4
1,990,544	+				-0.2
1,990,544	+				-0.2
1,990,544	+				-1.1
1,990,549	+				-0.1
1,990,552	-				-0.1
1,990,552	-				-0.1
1,990,552	-				-0.0
1,990,552	-				-0.1
1,990,557	-				+0.6
1,990,568	+				-0.9
1,990,596	-		Dshi_1906	0.13	-2.0
1,990,596	-		Dshi_1906	0.13	-2.0
1,990,598	+		Dshi_1906	0.13	-0.0
1,990,618	-		Dshi_1906	0.21	-0.5
1,990,635	+		Dshi_1906	0.27	-1.1
1,990,639	-		Dshi_1906	0.28	-0.6
1,990,656	+		Dshi_1906	0.34	-0.8
1,990,656	-		Dshi_1906	0.34	-0.7
1,990,656	-		Dshi_1906	0.34	+0.0
1,990,695	+		Dshi_1906	0.48	+1.1
1,990,697	+		Dshi_1906	0.49	-1.2
1,990,699	-		Dshi_1906	0.49	+0.2
1,990,704	+		Dshi_1906	0.51	-0.9
1,990,704	+		Dshi_1906	0.51	-0.5
1,990,712	-		Dshi_1906	0.54	-0.4
1,990,719	-		Dshi_1906	0.56	-0.0
1,990,740	-		Dshi_1906	0.64	-0.2
1,990,747	+		Dshi_1906	0.66	-1.2
1,990,750	-		Dshi_1906	0.67	+1.1
1,990,770	+		Dshi_1906	0.74	-0.2
1,990,770	+		Dshi_1906	0.74	+0.8
1,990,770	+		Dshi_1906	0.74	-0.6
1,990,773	-		Dshi_1906	0.76	-0.1
1,990,773	-		Dshi_1906	0.76	-0.5
1,990,778	-		Dshi_1906	0.77	-0.7
1,990,778	-		Dshi_1906	0.77	+0.5
1,990,783	-		Dshi_1906	0.79	-0.1
1,990,812	-		Dshi_1906	0.89	+0.9
1,990,818	+				-0.3
1,990,834	+				+0.1
1,990,835	+				+1.0
1,990,843	-				-0.2
1,990,848	+				-0.1
1,990,848	+				-0.5
1,990,848	+				+0.5
1,990,852	+				-1.0
1,990,854	-				-0.1
1,990,854	-				+0.2
1,990,855	-				-0.9
1,990,856	-				-0.4
1,990,856	-				+0.0
1,990,856	-				+1.5
1,990,856	-				-0.7
1,990,887	+				+0.7
1,990,895	-				+0.9
1,990,904	+				+0.1
1,990,912	-				-0.2
1,990,920	+				+0.0
1,990,921	+				-0.6
1,990,921	+				-0.0
1,990,923	-				+0.2
1,990,947	-				-2.1
1,990,954	+				-0.5
1,990,962	-				-0.4
1,990,963	-				-0.0
1,990,993	-				-0.5
1,990,999	-				+0.0
1,991,001	+				+0.1
1,991,009	-				+0.1
1,991,026	+				-0.4
1,991,026	+				-1.3
1,991,026	+				+0.0
1,991,034	+				-0.5
1,991,034	-				+1.1
1,991,036	+				+0.1
1,991,039	+				+0.2
1,991,061	+				-0.4
1,991,061	+				-0.3
1,991,063	+				-0.6
1,991,067	+				+0.1
1,991,069	-				+0.4
1,991,071	-				+1.9
1,991,073	+				-0.3
1,991,073	+				-0.2
1,991,073	+				-0.3
1,991,073	+				+1.4
1,991,075	-				+0.3
1,991,075	-				+0.7
1,991,079	+				-0.2
1,991,079	+				-0.6
1,991,079	+				-0.5
1,991,079	+				-1.2
1,991,079	+				+0.6
1,991,079	+				-0.5
1,991,079	+				-0.0
1,991,079	+				-0.3
1,991,080	+				-0.7
1,991,081	-				+0.3
1,991,087	-				-0.4
1,991,087	-				+0.8
1,991,087	-				+0.3
1,991,087	-				-0.5
1,991,087	-				-0.2
1,991,087	-				-0.4
1,991,087	-				+0.0
1,991,090	+				-2.1
1,991,098	+				-1.5
1,991,105	+		Dshi_1907	0.10	+0.4
1,991,117	+		Dshi_1907	0.11	-0.5
1,991,124	+		Dshi_1907	0.11	+0.2
1,991,125	+		Dshi_1907	0.12	-0.5
1,991,127	+		Dshi_1907	0.12	+0.5
1,991,127	+		Dshi_1907	0.12	-0.4
1,991,135	-		Dshi_1907	0.12	+0.1
1,991,141	+		Dshi_1907	0.13	+0.4
1,991,142	+		Dshi_1907	0.13	-1.3
1,991,158	-		Dshi_1907	0.14	-0.6
1,991,174	+		Dshi_1907	0.15	-0.2
1,991,177	-		Dshi_1907	0.15	-0.3
1,991,183	+		Dshi_1907	0.16	+0.1
1,991,215	-		Dshi_1907	0.18	+1.3
1,991,241	+		Dshi_1907	0.19	+1.1
1,991,241	+		Dshi_1907	0.19	+0.6
1,991,241	+		Dshi_1907	0.19	-0.9
1,991,241	+		Dshi_1907	0.19	-1.2
1,991,249	-		Dshi_1907	0.20	-0.7
1,991,249	-		Dshi_1907	0.20	+0.9
1,991,285	+		Dshi_1907	0.22	+0.9
1,991,293	+		Dshi_1907	0.23	+0.1
1,991,293	-		Dshi_1907	0.23	+0.6
1,991,293	-		Dshi_1907	0.23	+0.1
1,991,298	+		Dshi_1907	0.23	-0.0
1,991,322	-		Dshi_1907	0.25	+0.4
1,991,328	+		Dshi_1907	0.25	-0.5
1,991,353	+		Dshi_1907	0.27	-0.4
1,991,411	+		Dshi_1907	0.31	-0.7
1,991,419	-		Dshi_1907	0.32	+0.5
1,991,449	+		Dshi_1907	0.34	-0.2
1,991,458	+		Dshi_1907	0.34	-0.4
1,991,466	+		Dshi_1907	0.35	-0.3
1,991,469	-		Dshi_1907	0.35	+0.1
1,991,474	-		Dshi_1907	0.35	-2.7
1,991,479	-		Dshi_1907	0.36	+0.3
1,991,489	-		Dshi_1907	0.36	-0.1
1,991,496	+		Dshi_1907	0.37	+0.3
1,991,496	+		Dshi_1907	0.37	+0.6
1,991,496	+		Dshi_1907	0.37	+0.4
1,991,504	-		Dshi_1907	0.38	+0.2
1,991,504	-		Dshi_1907	0.38	-0.2
1,991,506	+		Dshi_1907	0.38	-0.1
1,991,506	+		Dshi_1907	0.38	-1.5
1,991,511	+		Dshi_1907	0.38	-0.2
1,991,511	+		Dshi_1907	0.38	+0.9
1,991,511	+		Dshi_1907	0.38	+0.3
1,991,514	-		Dshi_1907	0.38	-0.3
1,991,518	+		Dshi_1907	0.38	+0.5
1,991,519	-		Dshi_1907	0.39	-0.9
1,991,519	-		Dshi_1907	0.39	-0.1
1,991,526	-		Dshi_1907	0.39	-0.0
1,991,560	+		Dshi_1907	0.41	-0.3
1,991,578	-		Dshi_1907	0.43	+0.1
1,991,578	-		Dshi_1907	0.43	+0.2
1,991,578	-		Dshi_1907	0.43	-0.7
1,991,584	-		Dshi_1907	0.43	-0.2
1,991,586	+		Dshi_1907	0.43	-0.1
1,991,586	-		Dshi_1907	0.43	-0.3
1,991,586	-		Dshi_1907	0.43	-0.1
1,991,588	-		Dshi_1907	0.43	+0.2
1,991,606	+		Dshi_1907	0.45	+0.2
1,991,614	-				+2.3
1,991,614	-		Dshi_1907	0.45	+0.1
1,991,616	+		Dshi_1907	0.45	+1.9
1,991,616	+		Dshi_1907	0.45	-1.3
1,991,616	+		Dshi_1907	0.45	+0.4
1,991,624	-		Dshi_1907	0.46	-0.2
1,991,624	-		Dshi_1907	0.46	+0.5
1,991,624	-		Dshi_1907	0.46	-0.0
1,991,624	-		Dshi_1907	0.46	-0.3
1,991,624	-		Dshi_1907	0.46	+0.2
1,991,624	-		Dshi_1907	0.46	+0.5
1,991,624	-		Dshi_1907	0.46	+0.5
1,991,624	-		Dshi_1907	0.46	-0.2
1,991,624	-		Dshi_1907	0.46	-0.1
1,991,624	-		Dshi_1907	0.46	+0.2
1,991,641	+		Dshi_1907	0.47	-0.2
1,991,642	+		Dshi_1907	0.47	-0.5
1,991,643	-		Dshi_1907	0.47	+0.6
1,991,650	+		Dshi_1907	0.48	-0.3
1,991,650	+		Dshi_1907	0.48	+0.4
1,991,650	+		Dshi_1907	0.48	+0.3
1,991,650	+		Dshi_1907	0.48	-0.3
1,991,650	-		Dshi_1907	0.48	-0.7
1,991,650	-		Dshi_1907	0.48	-0.2
1,991,658	+		Dshi_1907	0.48	-0.4
1,991,658	-		Dshi_1907	0.48	-0.3
1,991,658	-		Dshi_1907	0.48	+0.0
1,991,658	-		Dshi_1907	0.48	-0.2
1,991,658	-		Dshi_1907	0.48	+1.1
1,991,658	-		Dshi_1907	0.48	+0.4
1,991,658	-		Dshi_1907	0.48	-0.2
1,991,658	-		Dshi_1907	0.48	-0.6
1,991,660	+		Dshi_1907	0.48	-0.1
1,991,660	+		Dshi_1907	0.48	-1.4
1,991,661	-		Dshi_1907	0.48	-0.4
1,991,661	-		Dshi_1907	0.48	-0.4
1,991,661	-		Dshi_1907	0.48	-0.1
1,991,661	-		Dshi_1907	0.48	+0.4
1,991,662	-		Dshi_1907	0.48	-1.8
1,991,663	+		Dshi_1907	0.48	+0.8
1,991,666	-		Dshi_1907	0.49	-0.2
1,991,676	-		Dshi_1907	0.49	-0.4
1,991,676	-		Dshi_1907	0.49	+0.4
1,991,682	+		Dshi_1907	0.50	-0.7
1,991,685	+		Dshi_1907	0.50	-0.3
1,991,698	+		Dshi_1907	0.51	-0.4
1,991,704	+		Dshi_1907	0.51	-0.0
1,991,706	-		Dshi_1907	0.51	-0.3
1,991,717	+		Dshi_1907	0.52	+0.3
1,991,762	-		Dshi_1907	0.55	+1.1
1,991,784	+		Dshi_1907	0.57	-0.4
1,991,784	+		Dshi_1907	0.57	+0.4
1,991,792	-		Dshi_1907	0.57	-0.0
1,991,792	-		Dshi_1907	0.57	-0.1
1,991,792	-		Dshi_1907	0.57	-0.4
1,991,802	+		Dshi_1907	0.58	+0.3
1,991,802	+		Dshi_1907	0.58	+0.0
1,991,802	+		Dshi_1907	0.58	-0.9
1,991,810	-		Dshi_1907	0.59	-0.2
1,991,810	-		Dshi_1907	0.59	-0.4
1,991,810	-		Dshi_1907	0.59	+0.1
1,991,810	-		Dshi_1907	0.59	-0.8
1,991,810	-		Dshi_1907	0.59	+0.3
1,991,810	-		Dshi_1907	0.59	-0.7
1,991,812	-		Dshi_1907	0.59	-0.0
1,991,816	+		Dshi_1907	0.59	-0.0
1,991,821	+		Dshi_1907	0.59	+0.9
1,991,821	+		Dshi_1907	0.59	+0.1
1,991,826	+		Dshi_1907	0.60	-0.1
1,991,836	+		Dshi_1907	0.60	+0.2