Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1097

Experiment: Trisodium citrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1095 and Dshi_1096 are separated by 56 nucleotidesDshi_1096 and Dshi_1097 are separated by 145 nucleotidesDshi_1097 and Dshi_1098 are separated by 112 nucleotides Dshi_1095: Dshi_1095 - aldehyde dehydrogenase (RefSeq), at 1,122,494 to 1,124,014 _1095 Dshi_1096: Dshi_1096 - lipolytic enzyme, G-D-S-L (RefSeq), at 1,124,071 to 1,124,751 _1096 Dshi_1097: Dshi_1097 - protein of unknown function DUF395 YeeE/YedE (RefSeq), at 1,124,897 to 1,125,964 _1097 Dshi_1098: Dshi_1098 - major facilitator superfamily MFS_1 (RefSeq), at 1,126,077 to 1,127,306 _1098 Position (kb) 1124 1125 1126Strain fitness (log2 ratio) -1 0 1at 1123.933 kb on + strandat 1123.978 kb on + strandat 1124.042 kb on + strandat 1124.215 kb on - strand, within Dshi_1096at 1124.221 kb on + strand, within Dshi_1096at 1124.353 kb on - strand, within Dshi_1096at 1124.380 kb on + strand, within Dshi_1096at 1124.414 kb on - strand, within Dshi_1096at 1124.498 kb on + strand, within Dshi_1096at 1124.498 kb on - strand, within Dshi_1096at 1124.527 kb on + strand, within Dshi_1096at 1124.616 kb on - strand, within Dshi_1096at 1124.694 kb on + strandat 1124.694 kb on + strandat 1124.694 kb on + strandat 1124.702 kb on - strandat 1124.704 kb on + strandat 1124.704 kb on + strandat 1124.884 kb on + strandat 1124.950 kb on + strandat 1124.980 kb on - strandat 1124.982 kb on + strandat 1124.985 kb on - strandat 1125.020 kb on - strand, within Dshi_1097at 1125.250 kb on + strand, within Dshi_1097at 1125.316 kb on - strand, within Dshi_1097at 1125.386 kb on - strand, within Dshi_1097at 1125.464 kb on + strand, within Dshi_1097at 1125.484 kb on + strand, within Dshi_1097at 1125.604 kb on - strand, within Dshi_1097at 1125.731 kb on - strand, within Dshi_1097at 1125.751 kb on - strand, within Dshi_1097at 1125.861 kb on + strandat 1126.120 kb on + strandat 1126.236 kb on + strand, within Dshi_1098at 1126.255 kb on - strand, within Dshi_1098at 1126.343 kb on + strand, within Dshi_1098at 1126.348 kb on + strand, within Dshi_1098at 1126.549 kb on + strand, within Dshi_1098at 1126.559 kb on + strand, within Dshi_1098at 1126.586 kb on + strand, within Dshi_1098at 1126.603 kb on + strand, within Dshi_1098at 1126.611 kb on - strand, within Dshi_1098at 1126.617 kb on - strand, within Dshi_1098at 1126.648 kb on - strand, within Dshi_1098at 1126.672 kb on + strand, within Dshi_1098at 1126.827 kb on + strand, within Dshi_1098at 1126.926 kb on - strand, within Dshi_1098

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Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate (C)
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1,123,933 + -0.8
1,123,978 + +0.2
1,124,042 + +0.2
1,124,215 - Dshi_1096 0.21 -0.6
1,124,221 + Dshi_1096 0.22 +0.4
1,124,353 - Dshi_1096 0.41 +0.2
1,124,380 + Dshi_1096 0.45 +0.1
1,124,414 - Dshi_1096 0.50 -0.4
1,124,498 + Dshi_1096 0.63 +0.3
1,124,498 - Dshi_1096 0.63 +0.7
1,124,527 + Dshi_1096 0.67 +0.3
1,124,616 - Dshi_1096 0.80 -0.5
1,124,694 + -0.1
1,124,694 + +0.8
1,124,694 + +0.3
1,124,702 - +0.2
1,124,704 + -1.4
1,124,704 + -0.1
1,124,884 + +0.0
1,124,950 + +0.5
1,124,980 - +0.4
1,124,982 + -0.8
1,124,985 - +1.0
1,125,020 - Dshi_1097 0.12 -0.0
1,125,250 + Dshi_1097 0.33 +0.5
1,125,316 - Dshi_1097 0.39 +0.3
1,125,386 - Dshi_1097 0.46 -0.1
1,125,464 + Dshi_1097 0.53 +0.4
1,125,484 + Dshi_1097 0.55 +0.9
1,125,604 - Dshi_1097 0.66 +0.6
1,125,731 - Dshi_1097 0.78 +0.7
1,125,751 - Dshi_1097 0.80 +0.9
1,125,861 + -0.4
1,126,120 + +1.1
1,126,236 + Dshi_1098 0.13 -0.8
1,126,255 - Dshi_1098 0.14 -0.2
1,126,343 + Dshi_1098 0.22 -1.2
1,126,348 + Dshi_1098 0.22 -0.3
1,126,549 + Dshi_1098 0.38 +0.8
1,126,559 + Dshi_1098 0.39 +0.1
1,126,586 + Dshi_1098 0.41 +0.1
1,126,603 + Dshi_1098 0.43 -0.2
1,126,611 - Dshi_1098 0.43 -1.1
1,126,617 - Dshi_1098 0.44 +0.2
1,126,648 - Dshi_1098 0.46 +0.3
1,126,672 + Dshi_1098 0.48 -0.1
1,126,827 + Dshi_1098 0.61 +0.1
1,126,926 - Dshi_1098 0.69 -0.0

Or see this region's nucleotide sequence