Experiment: Trisodium citrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1095 and Dshi_1096 are separated by 56 nucleotides Dshi_1096 and Dshi_1097 are separated by 145 nucleotides Dshi_1097 and Dshi_1098 are separated by 112 nucleotides
Dshi_1095: Dshi_1095 - aldehyde dehydrogenase (RefSeq), at 1,122,494 to 1,124,014
_1095
Dshi_1096: Dshi_1096 - lipolytic enzyme, G-D-S-L (RefSeq), at 1,124,071 to 1,124,751
_1096
Dshi_1097: Dshi_1097 - protein of unknown function DUF395 YeeE/YedE (RefSeq), at 1,124,897 to 1,125,964
_1097
Dshi_1098: Dshi_1098 - major facilitator superfamily MFS_1 (RefSeq), at 1,126,077 to 1,127,306
_1098
Position (kb)
1124
1125
1126 Strain fitness (log2 ratio)
-1
0
1 at 1123.933 kb on + strand at 1123.978 kb on + strand at 1124.042 kb on + strand at 1124.215 kb on - strand, within Dshi_1096 at 1124.221 kb on + strand, within Dshi_1096 at 1124.353 kb on - strand, within Dshi_1096 at 1124.380 kb on + strand, within Dshi_1096 at 1124.414 kb on - strand, within Dshi_1096 at 1124.498 kb on + strand, within Dshi_1096 at 1124.498 kb on - strand, within Dshi_1096 at 1124.527 kb on + strand, within Dshi_1096 at 1124.616 kb on - strand, within Dshi_1096 at 1124.694 kb on + strand at 1124.694 kb on + strand at 1124.694 kb on + strand at 1124.702 kb on - strand at 1124.704 kb on + strand at 1124.704 kb on + strand at 1124.884 kb on + strand at 1124.950 kb on + strand at 1124.980 kb on - strand at 1124.982 kb on + strand at 1124.985 kb on - strand at 1125.020 kb on - strand, within Dshi_1097 at 1125.250 kb on + strand, within Dshi_1097 at 1125.316 kb on - strand, within Dshi_1097 at 1125.386 kb on - strand, within Dshi_1097 at 1125.464 kb on + strand, within Dshi_1097 at 1125.484 kb on + strand, within Dshi_1097 at 1125.604 kb on - strand, within Dshi_1097 at 1125.731 kb on - strand, within Dshi_1097 at 1125.751 kb on - strand, within Dshi_1097 at 1125.861 kb on + strand at 1126.120 kb on + strand at 1126.236 kb on + strand, within Dshi_1098 at 1126.255 kb on - strand, within Dshi_1098 at 1126.343 kb on + strand, within Dshi_1098 at 1126.348 kb on + strand, within Dshi_1098 at 1126.549 kb on + strand, within Dshi_1098 at 1126.559 kb on + strand, within Dshi_1098 at 1126.586 kb on + strand, within Dshi_1098 at 1126.603 kb on + strand, within Dshi_1098 at 1126.611 kb on - strand, within Dshi_1098 at 1126.617 kb on - strand, within Dshi_1098 at 1126.648 kb on - strand, within Dshi_1098 at 1126.672 kb on + strand, within Dshi_1098 at 1126.827 kb on + strand, within Dshi_1098 at 1126.926 kb on - strand, within Dshi_1098
Per-strain Table
Position Strand Gene LocusTag Fraction Trisodium citrate (C) remove 1,123,933 + -0.8 1,123,978 + +0.2 1,124,042 + +0.2 1,124,215 - Dshi_1096 0.21 -0.6 1,124,221 + Dshi_1096 0.22 +0.4 1,124,353 - Dshi_1096 0.41 +0.2 1,124,380 + Dshi_1096 0.45 +0.1 1,124,414 - Dshi_1096 0.50 -0.4 1,124,498 + Dshi_1096 0.63 +0.3 1,124,498 - Dshi_1096 0.63 +0.7 1,124,527 + Dshi_1096 0.67 +0.3 1,124,616 - Dshi_1096 0.80 -0.5 1,124,694 + -0.1 1,124,694 + +0.8 1,124,694 + +0.3 1,124,702 - +0.2 1,124,704 + -1.4 1,124,704 + -0.1 1,124,884 + +0.0 1,124,950 + +0.5 1,124,980 - +0.4 1,124,982 + -0.8 1,124,985 - +1.0 1,125,020 - Dshi_1097 0.12 -0.0 1,125,250 + Dshi_1097 0.33 +0.5 1,125,316 - Dshi_1097 0.39 +0.3 1,125,386 - Dshi_1097 0.46 -0.1 1,125,464 + Dshi_1097 0.53 +0.4 1,125,484 + Dshi_1097 0.55 +0.9 1,125,604 - Dshi_1097 0.66 +0.6 1,125,731 - Dshi_1097 0.78 +0.7 1,125,751 - Dshi_1097 0.80 +0.9 1,125,861 + -0.4 1,126,120 + +1.1 1,126,236 + Dshi_1098 0.13 -0.8 1,126,255 - Dshi_1098 0.14 -0.2 1,126,343 + Dshi_1098 0.22 -1.2 1,126,348 + Dshi_1098 0.22 -0.3 1,126,549 + Dshi_1098 0.38 +0.8 1,126,559 + Dshi_1098 0.39 +0.1 1,126,586 + Dshi_1098 0.41 +0.1 1,126,603 + Dshi_1098 0.43 -0.2 1,126,611 - Dshi_1098 0.43 -1.1 1,126,617 - Dshi_1098 0.44 +0.2 1,126,648 - Dshi_1098 0.46 +0.3 1,126,672 + Dshi_1098 0.48 -0.1 1,126,827 + Dshi_1098 0.61 +0.1 1,126,926 - Dshi_1098 0.69 -0.0
Or see this region's nucleotide sequence