Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0443

Experiment: Trisodium citrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0442 and Dshi_0443 overlap by 17 nucleotidesDshi_0443 and Dshi_0444 are separated by 37 nucleotidesDshi_0444 and Dshi_0445 are separated by 33 nucleotidesDshi_0445 and Dshi_0446 are separated by 130 nucleotides Dshi_0442: Dshi_0442 - ATP synthase F1, alpha subunit (RefSeq), at 431,227 to 432,756 _0442 Dshi_0443: Dshi_0443 - H+transporting two-sector ATPase gamma subunit (RefSeq), at 432,740 to 433,687 _0443 Dshi_0444: Dshi_0444 - hypothetical protein (RefSeq), at 433,725 to 434,012 _0444 Dshi_0445: Dshi_0445 - hypothetical protein (RefSeq), at 434,046 to 434,438 _0445 Dshi_0446: Dshi_0446 - putative signal transduction protein with CBS domains (RefSeq), at 434,569 to 434,979 _0446 Position (kb) 432 433 434Strain fitness (log2 ratio) -2 -1 0 1at 431.927 kb on + strand, within Dshi_0442at 431.927 kb on + strand, within Dshi_0442at 431.945 kb on - strand, within Dshi_0442at 431.962 kb on - strand, within Dshi_0442at 431.971 kb on + strand, within Dshi_0442at 432.039 kb on + strand, within Dshi_0442at 432.247 kb on + strand, within Dshi_0442at 432.250 kb on - strand, within Dshi_0442at 432.252 kb on + strand, within Dshi_0442at 432.260 kb on - strand, within Dshi_0442at 432.271 kb on - strand, within Dshi_0442at 432.361 kb on + strand, within Dshi_0442at 432.361 kb on + strand, within Dshi_0442at 432.369 kb on - strand, within Dshi_0442at 432.465 kb on + strand, within Dshi_0442at 432.489 kb on + strand, within Dshi_0442at 432.551 kb on + strand, within Dshi_0442at 432.626 kb on + strandat 432.689 kb on + strandat 432.758 kb on - strandat 432.801 kb on - strandat 433.113 kb on - strand, within Dshi_0443at 433.193 kb on + strand, within Dshi_0443at 433.331 kb on + strand, within Dshi_0443at 433.368 kb on + strand, within Dshi_0443at 433.384 kb on + strand, within Dshi_0443at 433.476 kb on + strand, within Dshi_0443at 433.522 kb on + strand, within Dshi_0443at 433.558 kb on + strand, within Dshi_0443at 433.600 kb on + strandat 433.625 kb on + strandat 433.652 kb on + strandat 433.673 kb on + strandat 433.673 kb on + strandat 433.681 kb on - strandat 433.769 kb on + strand, within Dshi_0444at 433.784 kb on + strand, within Dshi_0444at 433.784 kb on + strand, within Dshi_0444at 433.807 kb on + strand, within Dshi_0444at 433.831 kb on + strand, within Dshi_0444at 433.902 kb on - strand, within Dshi_0444at 433.917 kb on + strand, within Dshi_0444at 433.918 kb on - strand, within Dshi_0444at 433.952 kb on + strand, within Dshi_0444at 433.960 kb on - strand, within Dshi_0444at 433.989 kb on + strandat 433.990 kb on + strandat 434.011 kb on + strandat 434.024 kb on - strandat 434.030 kb on - strandat 434.058 kb on + strandat 434.117 kb on - strand, within Dshi_0445at 434.150 kb on + strand, within Dshi_0445at 434.159 kb on + strand, within Dshi_0445at 434.167 kb on - strand, within Dshi_0445at 434.182 kb on + strand, within Dshi_0445at 434.205 kb on + strand, within Dshi_0445at 434.213 kb on - strand, within Dshi_0445at 434.217 kb on + strand, within Dshi_0445at 434.217 kb on + strand, within Dshi_0445at 434.264 kb on + strand, within Dshi_0445at 434.270 kb on - strand, within Dshi_0445at 434.291 kb on - strand, within Dshi_0445at 434.301 kb on + strand, within Dshi_0445at 434.322 kb on - strand, within Dshi_0445at 434.327 kb on + strand, within Dshi_0445at 434.376 kb on - strand, within Dshi_0445at 434.418 kb on + strandat 434.447 kb on + strandat 434.447 kb on + strandat 434.447 kb on + strandat 434.454 kb on - strandat 434.454 kb on - strandat 434.455 kb on - strandat 434.455 kb on - strandat 434.455 kb on - strandat 434.457 kb on + strandat 434.474 kb on + strandat 434.496 kb on + strandat 434.524 kb on + strandat 434.533 kb on - strandat 434.553 kb on + strandat 434.594 kb on + strandat 434.598 kb on + strandat 434.599 kb on + strandat 434.625 kb on + strand, within Dshi_0446at 434.644 kb on - strand, within Dshi_0446at 434.683 kb on + strand, within Dshi_0446

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Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate (C)
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431,927 + Dshi_0442 0.46 -0.4
431,927 + Dshi_0442 0.46 +0.2
431,945 - Dshi_0442 0.47 +0.1
431,962 - Dshi_0442 0.48 -0.6
431,971 + Dshi_0442 0.49 +0.4
432,039 + Dshi_0442 0.53 -0.3
432,247 + Dshi_0442 0.67 -0.2
432,250 - Dshi_0442 0.67 +0.1
432,252 + Dshi_0442 0.67 -0.3
432,260 - Dshi_0442 0.68 +1.2
432,271 - Dshi_0442 0.68 +0.6
432,361 + Dshi_0442 0.74 -1.6
432,361 + Dshi_0442 0.74 +0.0
432,369 - Dshi_0442 0.75 +0.3
432,465 + Dshi_0442 0.81 -0.4
432,489 + Dshi_0442 0.82 -0.8
432,551 + Dshi_0442 0.87 +0.2
432,626 + +0.3
432,689 + -0.4
432,758 - +0.8
432,801 - -0.3
433,113 - Dshi_0443 0.39 -0.0
433,193 + Dshi_0443 0.48 +1.0
433,331 + Dshi_0443 0.62 +0.5
433,368 + Dshi_0443 0.66 +0.6
433,384 + Dshi_0443 0.68 +0.4
433,476 + Dshi_0443 0.78 +0.9
433,522 + Dshi_0443 0.82 +0.1
433,558 + Dshi_0443 0.86 -0.5
433,600 + +0.4
433,625 + +1.3
433,652 + +0.3
433,673 + +1.6
433,673 + +0.2
433,681 - +0.6
433,769 + Dshi_0444 0.15 -0.6
433,784 + Dshi_0444 0.20 +1.0
433,784 + Dshi_0444 0.20 -0.1
433,807 + Dshi_0444 0.28 +0.2
433,831 + Dshi_0444 0.37 -0.6
433,902 - Dshi_0444 0.61 -0.2
433,917 + Dshi_0444 0.67 +0.4
433,918 - Dshi_0444 0.67 +0.4
433,952 + Dshi_0444 0.79 +0.2
433,960 - Dshi_0444 0.82 +0.8
433,989 + -0.3
433,990 + -0.4
434,011 + -1.5
434,024 - -0.5
434,030 - -0.4
434,058 + +0.3
434,117 - Dshi_0445 0.18 -0.3
434,150 + Dshi_0445 0.26 -0.5
434,159 + Dshi_0445 0.29 +0.1
434,167 - Dshi_0445 0.31 -0.3
434,182 + Dshi_0445 0.35 -0.4
434,205 + Dshi_0445 0.40 +0.7
434,213 - Dshi_0445 0.42 +1.2
434,217 + Dshi_0445 0.44 -2.2
434,217 + Dshi_0445 0.44 +0.5
434,264 + Dshi_0445 0.55 -0.1
434,270 - Dshi_0445 0.57 +0.1
434,291 - Dshi_0445 0.62 -0.6
434,301 + Dshi_0445 0.65 +0.0
434,322 - Dshi_0445 0.70 -0.4
434,327 + Dshi_0445 0.72 -0.2
434,376 - Dshi_0445 0.84 -0.1
434,418 + +0.0
434,447 + -0.1
434,447 + -0.3
434,447 + +0.6
434,454 - -0.3
434,454 - +0.4
434,455 - +1.0
434,455 - +0.2
434,455 - -0.0
434,457 + -0.3
434,474 + -0.7
434,496 + +0.0
434,524 + +0.6
434,533 - -0.7
434,553 + +0.6
434,594 + -0.6
434,598 + +0.0
434,599 + +0.8
434,625 + Dshi_0446 0.14 +1.2
434,644 - Dshi_0446 0.18 +0.1
434,683 + Dshi_0446 0.28 +0.4

Or see this region's nucleotide sequence