Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c09180

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c09160 and PGA1_c09170 overlap by 4 nucleotidesPGA1_c09170 and PGA1_c09180 are separated by 105 nucleotidesPGA1_c09180 and PGA1_c09200 are separated by 428 nucleotides PGA1_c09160: PGA1_c09160 - Uncharacterized protein conserved in bacteria, at 941,798 to 942,418 _c09160 PGA1_c09170: PGA1_c09170 - putative biotin synthesis protein BioC, at 942,415 to 943,203 _c09170 PGA1_c09180: PGA1_c09180 - Protein of unknown function (DUF2478)., at 943,309 to 943,836 _c09180 PGA1_c09200: PGA1_c09200 - putative 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB, at 944,265 to 945,041 _c09200 Position (kb) 943 944Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 942.358 kb on + strandat 942.396 kb on + strandat 942.409 kb on + strandat 942.428 kb on - strandat 942.438 kb on - strandat 942.483 kb on - strandat 942.755 kb on - strand, within PGA1_c09170at 942.756 kb on + strand, within PGA1_c09170at 942.764 kb on + strand, within PGA1_c09170at 942.846 kb on + strand, within PGA1_c09170at 942.854 kb on - strand, within PGA1_c09170at 942.860 kb on + strand, within PGA1_c09170at 942.860 kb on + strand, within PGA1_c09170at 942.868 kb on - strand, within PGA1_c09170at 942.922 kb on - strand, within PGA1_c09170at 942.943 kb on + strand, within PGA1_c09170at 942.977 kb on + strand, within PGA1_c09170at 943.009 kb on + strand, within PGA1_c09170at 943.039 kb on + strand, within PGA1_c09170at 943.047 kb on - strand, within PGA1_c09170at 943.095 kb on - strand, within PGA1_c09170at 943.166 kb on + strandat 943.167 kb on - strandat 943.174 kb on - strandat 943.202 kb on + strandat 943.214 kb on + strandat 943.262 kb on + strandat 943.317 kb on + strandat 943.325 kb on - strandat 943.325 kb on - strandat 943.388 kb on - strand, within PGA1_c09180at 943.519 kb on - strand, within PGA1_c09180at 943.559 kb on + strand, within PGA1_c09180at 943.569 kb on + strand, within PGA1_c09180at 943.593 kb on - strand, within PGA1_c09180at 943.723 kb on + strand, within PGA1_c09180at 943.788 kb on + strandat 943.794 kb on - strandat 944.043 kb on - strandat 944.216 kb on + strandat 944.235 kb on + strandat 944.235 kb on + strandat 944.329 kb on + strandat 944.337 kb on - strandat 944.337 kb on - strandat 944.377 kb on - strand, within PGA1_c09200at 944.462 kb on - strand, within PGA1_c09200at 944.537 kb on - strand, within PGA1_c09200at 944.546 kb on + strand, within PGA1_c09200at 944.554 kb on - strand, within PGA1_c09200at 944.619 kb on - strand, within PGA1_c09200at 944.703 kb on + strand, within PGA1_c09200at 944.711 kb on - strand, within PGA1_c09200at 944.711 kb on - strand, within PGA1_c09200at 944.825 kb on + strand, within PGA1_c09200

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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942,358 + -1.4
942,396 + -1.6
942,409 + +1.7
942,428 - -1.0
942,438 - +1.8
942,483 - +1.5
942,755 - PGA1_c09170 0.43 -1.6
942,756 + PGA1_c09170 0.43 -1.0
942,764 + PGA1_c09170 0.44 -2.3
942,846 + PGA1_c09170 0.55 +0.3
942,854 - PGA1_c09170 0.56 +1.2
942,860 + PGA1_c09170 0.56 -2.5
942,860 + PGA1_c09170 0.56 -2.3
942,868 - PGA1_c09170 0.57 -2.0
942,922 - PGA1_c09170 0.64 +1.1
942,943 + PGA1_c09170 0.67 -1.7
942,977 + PGA1_c09170 0.71 +0.6
943,009 + PGA1_c09170 0.75 +0.4
943,039 + PGA1_c09170 0.79 +0.5
943,047 - PGA1_c09170 0.80 -2.3
943,095 - PGA1_c09170 0.86 -0.2
943,166 + +1.4
943,167 - -2.4
943,174 - -1.1
943,202 + +1.9
943,214 + -1.2
943,262 + +0.2
943,317 + -0.1
943,325 - +2.5
943,325 - +2.6
943,388 - PGA1_c09180 0.15 -3.5
943,519 - PGA1_c09180 0.40 -2.2
943,559 + PGA1_c09180 0.47 -0.2
943,569 + PGA1_c09180 0.49 +1.4
943,593 - PGA1_c09180 0.54 -2.6
943,723 + PGA1_c09180 0.78 -0.3
943,788 + +0.5
943,794 - -1.0
944,043 - +0.5
944,216 + +0.7
944,235 + -2.1
944,235 + +1.7
944,329 + +0.6
944,337 - +1.5
944,337 - -4.0
944,377 - PGA1_c09200 0.14 +0.8
944,462 - PGA1_c09200 0.25 +0.4
944,537 - PGA1_c09200 0.35 +2.6
944,546 + PGA1_c09200 0.36 -0.7
944,554 - PGA1_c09200 0.37 +0.9
944,619 - PGA1_c09200 0.46 -1.4
944,703 + PGA1_c09200 0.56 -1.7
944,711 - PGA1_c09200 0.57 -0.4
944,711 - PGA1_c09200 0.57 -1.5
944,825 + PGA1_c09200 0.72 -2.7

Or see this region's nucleotide sequence