Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c09160 and PGA1_c09170 overlap by 4 nucleotides PGA1_c09170 and PGA1_c09180 are separated by 105 nucleotides PGA1_c09180 and PGA1_c09200 are separated by 428 nucleotides
PGA1_c09160: PGA1_c09160 - Uncharacterized protein conserved in bacteria, at 941,798 to 942,418
_c09160
PGA1_c09170: PGA1_c09170 - putative biotin synthesis protein BioC, at 942,415 to 943,203
_c09170
PGA1_c09180: PGA1_c09180 - Protein of unknown function (DUF2478)., at 943,309 to 943,836
_c09180
PGA1_c09200: PGA1_c09200 - putative 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB, at 944,265 to 945,041
_c09200
Position (kb)
943
944 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 942.358 kb on + strand at 942.396 kb on + strand at 942.409 kb on + strand at 942.428 kb on - strand at 942.438 kb on - strand at 942.483 kb on - strand at 942.755 kb on - strand, within PGA1_c09170 at 942.756 kb on + strand, within PGA1_c09170 at 942.764 kb on + strand, within PGA1_c09170 at 942.846 kb on + strand, within PGA1_c09170 at 942.854 kb on - strand, within PGA1_c09170 at 942.860 kb on + strand, within PGA1_c09170 at 942.860 kb on + strand, within PGA1_c09170 at 942.868 kb on - strand, within PGA1_c09170 at 942.922 kb on - strand, within PGA1_c09170 at 942.943 kb on + strand, within PGA1_c09170 at 942.977 kb on + strand, within PGA1_c09170 at 943.009 kb on + strand, within PGA1_c09170 at 943.039 kb on + strand, within PGA1_c09170 at 943.047 kb on - strand, within PGA1_c09170 at 943.095 kb on - strand, within PGA1_c09170 at 943.166 kb on + strand at 943.167 kb on - strand at 943.174 kb on - strand at 943.202 kb on + strand at 943.214 kb on + strand at 943.262 kb on + strand at 943.317 kb on + strand at 943.325 kb on - strand at 943.325 kb on - strand at 943.388 kb on - strand, within PGA1_c09180 at 943.519 kb on - strand, within PGA1_c09180 at 943.559 kb on + strand, within PGA1_c09180 at 943.569 kb on + strand, within PGA1_c09180 at 943.593 kb on - strand, within PGA1_c09180 at 943.723 kb on + strand, within PGA1_c09180 at 943.788 kb on + strand at 943.794 kb on - strand at 944.043 kb on - strand at 944.216 kb on + strand at 944.235 kb on + strand at 944.235 kb on + strand at 944.329 kb on + strand at 944.337 kb on - strand at 944.337 kb on - strand at 944.377 kb on - strand, within PGA1_c09200 at 944.462 kb on - strand, within PGA1_c09200 at 944.537 kb on - strand, within PGA1_c09200 at 944.546 kb on + strand, within PGA1_c09200 at 944.554 kb on - strand, within PGA1_c09200 at 944.619 kb on - strand, within PGA1_c09200 at 944.703 kb on + strand, within PGA1_c09200 at 944.711 kb on - strand, within PGA1_c09200 at 944.711 kb on - strand, within PGA1_c09200 at 944.825 kb on + strand, within PGA1_c09200
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 942,358 + -1.4 942,396 + -1.6 942,409 + +1.7 942,428 - -1.0 942,438 - +1.8 942,483 - +1.5 942,755 - PGA1_c09170 0.43 -1.6 942,756 + PGA1_c09170 0.43 -1.0 942,764 + PGA1_c09170 0.44 -2.3 942,846 + PGA1_c09170 0.55 +0.3 942,854 - PGA1_c09170 0.56 +1.2 942,860 + PGA1_c09170 0.56 -2.5 942,860 + PGA1_c09170 0.56 -2.3 942,868 - PGA1_c09170 0.57 -2.0 942,922 - PGA1_c09170 0.64 +1.1 942,943 + PGA1_c09170 0.67 -1.7 942,977 + PGA1_c09170 0.71 +0.6 943,009 + PGA1_c09170 0.75 +0.4 943,039 + PGA1_c09170 0.79 +0.5 943,047 - PGA1_c09170 0.80 -2.3 943,095 - PGA1_c09170 0.86 -0.2 943,166 + +1.4 943,167 - -2.4 943,174 - -1.1 943,202 + +1.9 943,214 + -1.2 943,262 + +0.2 943,317 + -0.1 943,325 - +2.5 943,325 - +2.6 943,388 - PGA1_c09180 0.15 -3.5 943,519 - PGA1_c09180 0.40 -2.2 943,559 + PGA1_c09180 0.47 -0.2 943,569 + PGA1_c09180 0.49 +1.4 943,593 - PGA1_c09180 0.54 -2.6 943,723 + PGA1_c09180 0.78 -0.3 943,788 + +0.5 943,794 - -1.0 944,043 - +0.5 944,216 + +0.7 944,235 + -2.1 944,235 + +1.7 944,329 + +0.6 944,337 - +1.5 944,337 - -4.0 944,377 - PGA1_c09200 0.14 +0.8 944,462 - PGA1_c09200 0.25 +0.4 944,537 - PGA1_c09200 0.35 +2.6 944,546 + PGA1_c09200 0.36 -0.7 944,554 - PGA1_c09200 0.37 +0.9 944,619 - PGA1_c09200 0.46 -1.4 944,703 + PGA1_c09200 0.56 -1.7 944,711 - PGA1_c09200 0.57 -0.4 944,711 - PGA1_c09200 0.57 -1.5 944,825 + PGA1_c09200 0.72 -2.7
Or see this region's nucleotide sequence