Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c07290 and PGA1_c07300 are separated by 225 nucleotides PGA1_c07300 and PGA1_c07310 are separated by 62 nucleotides
PGA1_c07290: PGA1_c07290 - transcriptional regulator, lacI family, at 750,526 to 751,527
_c07290
PGA1_c07300: PGA1_c07300 - Inositol transport system sugar-binding protein (from data) , at 751,753 to 752,703
_c07300
PGA1_c07310: PGA1_c07310 - Inositol transport system permease protein (from data) , at 752,766 to 753,887
_c07310
Position (kb)
751
752
753 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 750.904 kb on - strand, within PGA1_c07290 at 750.929 kb on + strand, within PGA1_c07290 at 750.929 kb on + strand, within PGA1_c07290 at 750.997 kb on - strand, within PGA1_c07290 at 751.006 kb on + strand, within PGA1_c07290 at 751.006 kb on + strand, within PGA1_c07290 at 751.006 kb on + strand, within PGA1_c07290 at 751.006 kb on + strand, within PGA1_c07290 at 751.006 kb on + strand, within PGA1_c07290 at 751.006 kb on + strand, within PGA1_c07290 at 751.006 kb on + strand, within PGA1_c07290 at 751.006 kb on + strand, within PGA1_c07290 at 751.014 kb on - strand, within PGA1_c07290 at 751.014 kb on - strand, within PGA1_c07290 at 751.014 kb on - strand, within PGA1_c07290 at 751.014 kb on - strand, within PGA1_c07290 at 751.016 kb on - strand, within PGA1_c07290 at 751.016 kb on - strand, within PGA1_c07290 at 751.018 kb on + strand, within PGA1_c07290 at 751.069 kb on - strand, within PGA1_c07290 at 751.160 kb on - strand, within PGA1_c07290 at 751.165 kb on - strand, within PGA1_c07290 at 751.286 kb on - strand, within PGA1_c07290 at 751.302 kb on + strand, within PGA1_c07290 at 751.372 kb on + strand, within PGA1_c07290 at 751.388 kb on + strand, within PGA1_c07290 at 751.390 kb on + strand, within PGA1_c07290 at 751.426 kb on - strand, within PGA1_c07290 at 751.481 kb on + strand at 751.488 kb on + strand at 751.525 kb on - strand at 751.561 kb on + strand at 751.561 kb on - strand at 751.570 kb on - strand at 751.570 kb on - strand at 751.587 kb on + strand at 751.592 kb on + strand at 751.712 kb on + strand at 751.712 kb on + strand at 751.712 kb on + strand at 751.812 kb on + strand at 751.904 kb on + strand, within PGA1_c07300 at 751.934 kb on - strand, within PGA1_c07300 at 751.939 kb on - strand, within PGA1_c07300 at 751.947 kb on + strand, within PGA1_c07300 at 752.003 kb on - strand, within PGA1_c07300 at 752.040 kb on - strand, within PGA1_c07300 at 752.045 kb on + strand, within PGA1_c07300 at 752.074 kb on + strand, within PGA1_c07300 at 752.074 kb on + strand, within PGA1_c07300 at 752.074 kb on + strand, within PGA1_c07300 at 752.095 kb on - strand, within PGA1_c07300 at 752.117 kb on + strand, within PGA1_c07300 at 752.122 kb on + strand, within PGA1_c07300 at 752.148 kb on + strand, within PGA1_c07300 at 752.156 kb on - strand, within PGA1_c07300 at 752.171 kb on - strand, within PGA1_c07300 at 752.190 kb on + strand, within PGA1_c07300 at 752.239 kb on - strand, within PGA1_c07300 at 752.277 kb on + strand, within PGA1_c07300 at 752.327 kb on - strand, within PGA1_c07300 at 752.390 kb on - strand, within PGA1_c07300 at 752.413 kb on - strand, within PGA1_c07300 at 752.425 kb on + strand, within PGA1_c07300 at 752.425 kb on + strand, within PGA1_c07300 at 752.425 kb on + strand, within PGA1_c07300 at 752.426 kb on + strand, within PGA1_c07300 at 752.434 kb on - strand, within PGA1_c07300 at 752.483 kb on + strand, within PGA1_c07300 at 752.483 kb on + strand, within PGA1_c07300 at 752.483 kb on + strand, within PGA1_c07300 at 752.483 kb on + strand, within PGA1_c07300 at 752.483 kb on + strand, within PGA1_c07300 at 752.483 kb on + strand, within PGA1_c07300 at 752.491 kb on - strand, within PGA1_c07300 at 752.491 kb on - strand, within PGA1_c07300 at 752.491 kb on - strand, within PGA1_c07300 at 752.513 kb on - strand, within PGA1_c07300 at 752.527 kb on + strand, within PGA1_c07300 at 752.532 kb on + strand, within PGA1_c07300 at 752.592 kb on - strand, within PGA1_c07300 at 752.628 kb on + strand at 752.633 kb on + strand at 752.665 kb on - strand at 752.689 kb on + strand at 752.697 kb on - strand at 752.697 kb on - strand at 752.710 kb on + strand at 752.761 kb on + strand at 752.776 kb on - strand at 752.776 kb on - strand at 752.812 kb on - strand at 752.832 kb on + strand at 752.832 kb on + strand at 752.832 kb on + strand at 752.861 kb on + strand at 752.862 kb on + strand at 752.877 kb on - strand at 752.877 kb on - strand at 752.916 kb on + strand, within PGA1_c07310 at 752.916 kb on + strand, within PGA1_c07310 at 752.918 kb on + strand, within PGA1_c07310 at 752.918 kb on + strand, within PGA1_c07310 at 752.924 kb on - strand, within PGA1_c07310 at 752.926 kb on - strand, within PGA1_c07310 at 752.926 kb on - strand, within PGA1_c07310 at 752.926 kb on - strand, within PGA1_c07310 at 752.926 kb on - strand, within PGA1_c07310 at 752.979 kb on + strand, within PGA1_c07310 at 753.004 kb on - strand, within PGA1_c07310 at 753.070 kb on + strand, within PGA1_c07310 at 753.075 kb on + strand, within PGA1_c07310 at 753.075 kb on + strand, within PGA1_c07310 at 753.075 kb on + strand, within PGA1_c07310 at 753.075 kb on + strand, within PGA1_c07310 at 753.075 kb on + strand, within PGA1_c07310 at 753.075 kb on + strand, within PGA1_c07310 at 753.080 kb on + strand, within PGA1_c07310 at 753.083 kb on - strand, within PGA1_c07310 at 753.083 kb on - strand, within PGA1_c07310 at 753.083 kb on - strand, within PGA1_c07310 at 753.083 kb on - strand, within PGA1_c07310 at 753.083 kb on - strand, within PGA1_c07310 at 753.083 kb on - strand, within PGA1_c07310 at 753.083 kb on - strand, within PGA1_c07310 at 753.083 kb on - strand, within PGA1_c07310 at 753.122 kb on + strand, within PGA1_c07310 at 753.137 kb on - strand, within PGA1_c07310 at 753.168 kb on + strand, within PGA1_c07310 at 753.168 kb on + strand, within PGA1_c07310 at 753.168 kb on + strand, within PGA1_c07310 at 753.176 kb on - strand, within PGA1_c07310 at 753.176 kb on - strand, within PGA1_c07310 at 753.189 kb on + strand, within PGA1_c07310 at 753.192 kb on - strand, within PGA1_c07310 at 753.210 kb on - strand, within PGA1_c07310 at 753.280 kb on - strand, within PGA1_c07310 at 753.288 kb on + strand, within PGA1_c07310 at 753.316 kb on - strand, within PGA1_c07310 at 753.331 kb on + strand, within PGA1_c07310 at 753.364 kb on - strand, within PGA1_c07310 at 753.404 kb on + strand, within PGA1_c07310 at 753.412 kb on - strand, within PGA1_c07310 at 753.433 kb on + strand, within PGA1_c07310 at 753.441 kb on - strand, within PGA1_c07310 at 753.441 kb on - strand, within PGA1_c07310 at 753.515 kb on + strand, within PGA1_c07310 at 753.515 kb on + strand, within PGA1_c07310 at 753.515 kb on + strand, within PGA1_c07310 at 753.532 kb on + strand, within PGA1_c07310 at 753.540 kb on - strand, within PGA1_c07310 at 753.540 kb on - strand, within PGA1_c07310 at 753.543 kb on + strand, within PGA1_c07310 at 753.551 kb on - strand, within PGA1_c07310 at 753.551 kb on - strand, within PGA1_c07310 at 753.551 kb on - strand, within PGA1_c07310 at 753.592 kb on - strand, within PGA1_c07310 at 753.596 kb on + strand, within PGA1_c07310 at 753.699 kb on + strand, within PGA1_c07310 at 753.699 kb on + strand, within PGA1_c07310
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 750,904 - PGA1_c07290 0.38 +0.4 750,929 + PGA1_c07290 0.40 -1.5 750,929 + PGA1_c07290 0.40 +0.2 750,997 - PGA1_c07290 0.47 -0.3 751,006 + PGA1_c07290 0.48 +0.8 751,006 + PGA1_c07290 0.48 -1.6 751,006 + PGA1_c07290 0.48 +1.2 751,006 + PGA1_c07290 0.48 -2.6 751,006 + PGA1_c07290 0.48 -2.0 751,006 + PGA1_c07290 0.48 -1.3 751,006 + PGA1_c07290 0.48 +1.7 751,006 + PGA1_c07290 0.48 -0.3 751,014 - PGA1_c07290 0.49 -1.1 751,014 - PGA1_c07290 0.49 -2.4 751,014 - PGA1_c07290 0.49 +1.3 751,014 - PGA1_c07290 0.49 -0.1 751,016 - PGA1_c07290 0.49 +0.3 751,016 - PGA1_c07290 0.49 +0.8 751,018 + PGA1_c07290 0.49 +2.1 751,069 - PGA1_c07290 0.54 -2.2 751,160 - PGA1_c07290 0.63 +0.7 751,165 - PGA1_c07290 0.64 -2.1 751,286 - PGA1_c07290 0.76 -0.5 751,302 + PGA1_c07290 0.77 +1.3 751,372 + PGA1_c07290 0.84 +1.4 751,388 + PGA1_c07290 0.86 +1.2 751,390 + PGA1_c07290 0.86 +1.5 751,426 - PGA1_c07290 0.90 +2.0 751,481 + -1.5 751,488 + -0.3 751,525 - -2.8 751,561 + -3.2 751,561 - -1.0 751,570 - -1.0 751,570 - -2.6 751,587 + +0.9 751,592 + -2.9 751,712 + -2.0 751,712 + -0.6 751,712 + +1.4 751,812 + +1.1 751,904 + PGA1_c07300 0.16 +0.8 751,934 - PGA1_c07300 0.19 +0.4 751,939 - PGA1_c07300 0.20 -2.6 751,947 + PGA1_c07300 0.20 -0.3 752,003 - PGA1_c07300 0.26 -0.7 752,040 - PGA1_c07300 0.30 +1.2 752,045 + PGA1_c07300 0.31 +0.4 752,074 + PGA1_c07300 0.34 -2.6 752,074 + PGA1_c07300 0.34 -2.5 752,074 + PGA1_c07300 0.34 -1.6 752,095 - PGA1_c07300 0.36 -0.2 752,117 + PGA1_c07300 0.38 +1.4 752,122 + PGA1_c07300 0.39 +2.0 752,148 + PGA1_c07300 0.42 -0.2 752,156 - PGA1_c07300 0.42 +0.5 752,171 - PGA1_c07300 0.44 -2.8 752,190 + PGA1_c07300 0.46 +2.9 752,239 - PGA1_c07300 0.51 -1.6 752,277 + PGA1_c07300 0.55 -3.3 752,327 - PGA1_c07300 0.60 -0.3 752,390 - PGA1_c07300 0.67 +1.1 752,413 - PGA1_c07300 0.69 -1.2 752,425 + PGA1_c07300 0.71 -0.1 752,425 + PGA1_c07300 0.71 -0.5 752,425 + PGA1_c07300 0.71 +0.6 752,426 + PGA1_c07300 0.71 -0.9 752,434 - PGA1_c07300 0.72 -0.2 752,483 + PGA1_c07300 0.77 +0.8 752,483 + PGA1_c07300 0.77 -2.5 752,483 + PGA1_c07300 0.77 +1.3 752,483 + PGA1_c07300 0.77 -1.3 752,483 + PGA1_c07300 0.77 +0.5 752,483 + PGA1_c07300 0.77 +2.0 752,491 - PGA1_c07300 0.78 -0.2 752,491 - PGA1_c07300 0.78 +1.1 752,491 - PGA1_c07300 0.78 -0.4 752,513 - PGA1_c07300 0.80 -1.8 752,527 + PGA1_c07300 0.81 +0.5 752,532 + PGA1_c07300 0.82 -0.6 752,592 - PGA1_c07300 0.88 -2.3 752,628 + -0.2 752,633 + +0.9 752,665 - +0.1 752,689 + -2.7 752,697 - -1.3 752,697 - -1.0 752,710 + -0.1 752,761 + +0.1 752,776 - +1.4 752,776 - -0.3 752,812 - +0.9 752,832 + -1.9 752,832 + -1.2 752,832 + +2.9 752,861 + +0.4 752,862 + +0.1 752,877 - -2.0 752,877 - -1.3 752,916 + PGA1_c07310 0.13 +0.4 752,916 + PGA1_c07310 0.13 +0.4 752,918 + PGA1_c07310 0.14 -2.1 752,918 + PGA1_c07310 0.14 +0.9 752,924 - PGA1_c07310 0.14 -0.8 752,926 - PGA1_c07310 0.14 +0.9 752,926 - PGA1_c07310 0.14 -2.5 752,926 - PGA1_c07310 0.14 +2.3 752,926 - PGA1_c07310 0.14 -1.3 752,979 + PGA1_c07310 0.19 -2.6 753,004 - PGA1_c07310 0.21 +1.0 753,070 + PGA1_c07310 0.27 +0.2 753,075 + PGA1_c07310 0.28 +2.1 753,075 + PGA1_c07310 0.28 +0.4 753,075 + PGA1_c07310 0.28 -2.8 753,075 + PGA1_c07310 0.28 +0.1 753,075 + PGA1_c07310 0.28 -2.5 753,075 + PGA1_c07310 0.28 -0.9 753,080 + PGA1_c07310 0.28 +1.1 753,083 - PGA1_c07310 0.28 -3.8 753,083 - PGA1_c07310 0.28 -0.3 753,083 - PGA1_c07310 0.28 -2.1 753,083 - PGA1_c07310 0.28 +2.3 753,083 - PGA1_c07310 0.28 -0.1 753,083 - PGA1_c07310 0.28 -1.6 753,083 - PGA1_c07310 0.28 -1.6 753,083 - PGA1_c07310 0.28 -1.8 753,122 + PGA1_c07310 0.32 -2.7 753,137 - PGA1_c07310 0.33 -1.9 753,168 + PGA1_c07310 0.36 -2.5 753,168 + PGA1_c07310 0.36 +1.9 753,168 + PGA1_c07310 0.36 -3.0 753,176 - PGA1_c07310 0.37 -3.3 753,176 - PGA1_c07310 0.37 -2.1 753,189 + PGA1_c07310 0.38 +2.6 753,192 - PGA1_c07310 0.38 -0.2 753,210 - PGA1_c07310 0.40 +2.4 753,280 - PGA1_c07310 0.46 -1.1 753,288 + PGA1_c07310 0.47 +0.2 753,316 - PGA1_c07310 0.49 +1.3 753,331 + PGA1_c07310 0.50 +0.4 753,364 - PGA1_c07310 0.53 -0.6 753,404 + PGA1_c07310 0.57 -1.5 753,412 - PGA1_c07310 0.58 -1.3 753,433 + PGA1_c07310 0.59 +0.4 753,441 - PGA1_c07310 0.60 -0.5 753,441 - PGA1_c07310 0.60 +1.4 753,515 + PGA1_c07310 0.67 +0.4 753,515 + PGA1_c07310 0.67 -4.0 753,515 + PGA1_c07310 0.67 -0.4 753,532 + PGA1_c07310 0.68 +0.6 753,540 - PGA1_c07310 0.69 -1.3 753,540 - PGA1_c07310 0.69 +0.9 753,543 + PGA1_c07310 0.69 -0.5 753,551 - PGA1_c07310 0.70 -0.2 753,551 - PGA1_c07310 0.70 +1.7 753,551 - PGA1_c07310 0.70 -0.6 753,592 - PGA1_c07310 0.74 +0.5 753,596 + PGA1_c07310 0.74 -1.7 753,699 + PGA1_c07310 0.83 -0.6 753,699 + PGA1_c07310 0.83 -3.6
Or see this region's nucleotide sequence