Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c05270

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c05260 and PGA1_c05270 are separated by 74 nucleotidesPGA1_c05270 and PGA1_c05280 are separated by 72 nucleotides PGA1_c05260: PGA1_c05260 - exopolysaccharide production protein ExoY-like protein, at 521,727 to 522,452 _c05260 PGA1_c05270: PGA1_c05270 - ATPases involved in chromosome partitioning, at 522,527 to 523,600 _c05270 PGA1_c05280: PGA1_c05280 - hypothetical protein, at 523,673 to 524,959 _c05280 Position (kb) 522 523 524Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 521.533 kb on + strandat 521.533 kb on + strandat 521.533 kb on + strandat 521.538 kb on + strandat 521.538 kb on + strandat 521.539 kb on + strandat 521.540 kb on + strandat 521.540 kb on + strandat 521.549 kb on - strandat 521.615 kb on + strandat 521.622 kb on + strandat 521.623 kb on - strandat 521.671 kb on + strandat 521.713 kb on - strandat 521.715 kb on + strandat 521.723 kb on - strandat 521.723 kb on - strandat 521.758 kb on + strandat 521.804 kb on + strand, within PGA1_c05260at 521.804 kb on + strand, within PGA1_c05260at 521.806 kb on - strand, within PGA1_c05260at 521.823 kb on + strand, within PGA1_c05260at 521.831 kb on - strand, within PGA1_c05260at 521.831 kb on - strand, within PGA1_c05260at 521.839 kb on - strand, within PGA1_c05260at 521.883 kb on + strand, within PGA1_c05260at 521.891 kb on - strand, within PGA1_c05260at 521.891 kb on - strand, within PGA1_c05260at 521.891 kb on - strand, within PGA1_c05260at 521.900 kb on - strand, within PGA1_c05260at 521.905 kb on + strand, within PGA1_c05260at 521.911 kb on + strand, within PGA1_c05260at 521.935 kb on + strand, within PGA1_c05260at 521.947 kb on + strand, within PGA1_c05260at 521.947 kb on + strand, within PGA1_c05260at 521.947 kb on + strand, within PGA1_c05260at 521.947 kb on + strand, within PGA1_c05260at 521.947 kb on + strand, within PGA1_c05260at 521.955 kb on - strand, within PGA1_c05260at 521.955 kb on - strand, within PGA1_c05260at 521.955 kb on - strand, within PGA1_c05260at 521.955 kb on - strand, within PGA1_c05260at 521.955 kb on - strand, within PGA1_c05260at 521.955 kb on - strand, within PGA1_c05260at 521.974 kb on + strand, within PGA1_c05260at 521.983 kb on + strand, within PGA1_c05260at 521.983 kb on + strand, within PGA1_c05260at 521.983 kb on + strand, within PGA1_c05260at 521.983 kb on + strand, within PGA1_c05260at 521.983 kb on + strand, within PGA1_c05260at 521.983 kb on + strand, within PGA1_c05260at 521.983 kb on + strand, within PGA1_c05260at 521.983 kb on + strand, within PGA1_c05260at 521.983 kb on + strand, within PGA1_c05260at 521.986 kb on - strand, within PGA1_c05260at 521.991 kb on - strand, within PGA1_c05260at 521.991 kb on - strand, within PGA1_c05260at 521.991 kb on - strand, within PGA1_c05260at 521.991 kb on - strand, within PGA1_c05260at 521.991 kb on - strand, within PGA1_c05260at 521.991 kb on - strand, within PGA1_c05260at 521.991 kb on - strand, within PGA1_c05260at 522.007 kb on + strand, within PGA1_c05260at 522.015 kb on - strand, within PGA1_c05260at 522.025 kb on + strand, within PGA1_c05260at 522.036 kb on - strand, within PGA1_c05260at 522.040 kb on + strand, within PGA1_c05260at 522.048 kb on - strand, within PGA1_c05260at 522.048 kb on - strand, within PGA1_c05260at 522.097 kb on + strand, within PGA1_c05260at 522.131 kb on - strand, within PGA1_c05260at 522.170 kb on - strand, within PGA1_c05260at 522.170 kb on - strand, within PGA1_c05260at 522.185 kb on + strand, within PGA1_c05260at 522.193 kb on - strand, within PGA1_c05260at 522.195 kb on + strand, within PGA1_c05260at 522.228 kb on + strand, within PGA1_c05260at 522.345 kb on + strand, within PGA1_c05260at 522.353 kb on - strand, within PGA1_c05260at 522.360 kb on + strand, within PGA1_c05260at 522.397 kb on + strandat 522.405 kb on - strandat 522.420 kb on - strandat 522.424 kb on + strandat 522.426 kb on - strandat 522.455 kb on + strandat 522.455 kb on + strandat 522.455 kb on + strandat 522.455 kb on + strandat 522.455 kb on + strandat 522.502 kb on - strandat 522.555 kb on + strandat 522.565 kb on - strandat 522.622 kb on - strandat 522.662 kb on + strand, within PGA1_c05270at 522.670 kb on - strand, within PGA1_c05270at 522.859 kb on + strand, within PGA1_c05270at 522.867 kb on - strand, within PGA1_c05270at 522.907 kb on + strand, within PGA1_c05270at 522.907 kb on + strand, within PGA1_c05270at 522.954 kb on - strand, within PGA1_c05270at 522.960 kb on - strand, within PGA1_c05270at 522.961 kb on + strand, within PGA1_c05270at 522.987 kb on + strand, within PGA1_c05270at 522.987 kb on + strand, within PGA1_c05270at 523.029 kb on + strand, within PGA1_c05270at 523.029 kb on + strand, within PGA1_c05270at 523.029 kb on + strand, within PGA1_c05270at 523.037 kb on + strand, within PGA1_c05270at 523.037 kb on - strand, within PGA1_c05270at 523.037 kb on - strand, within PGA1_c05270at 523.037 kb on - strand, within PGA1_c05270at 523.148 kb on + strand, within PGA1_c05270at 523.148 kb on + strand, within PGA1_c05270at 523.148 kb on + strand, within PGA1_c05270at 523.148 kb on + strand, within PGA1_c05270at 523.156 kb on - strand, within PGA1_c05270at 523.156 kb on - strand, within PGA1_c05270at 523.251 kb on - strand, within PGA1_c05270at 523.256 kb on + strand, within PGA1_c05270at 523.264 kb on - strand, within PGA1_c05270at 523.344 kb on + strand, within PGA1_c05270at 523.363 kb on - strand, within PGA1_c05270at 523.367 kb on + strand, within PGA1_c05270at 523.370 kb on - strand, within PGA1_c05270at 523.377 kb on - strand, within PGA1_c05270at 523.458 kb on + strand, within PGA1_c05270at 523.458 kb on - strand, within PGA1_c05270at 523.460 kb on + strand, within PGA1_c05270at 523.501 kb on - strandat 523.537 kb on - strandat 523.548 kb on + strandat 523.572 kb on + strandat 523.572 kb on + strandat 523.577 kb on + strandat 523.580 kb on - strandat 523.612 kb on + strandat 523.614 kb on + strandat 523.619 kb on + strandat 523.664 kb on + strandat 523.676 kb on + strandat 523.681 kb on + strandat 523.689 kb on - strandat 523.707 kb on - strandat 523.743 kb on - strandat 523.750 kb on + strandat 523.814 kb on + strand, within PGA1_c05280at 523.852 kb on + strand, within PGA1_c05280at 523.887 kb on + strand, within PGA1_c05280at 523.887 kb on + strand, within PGA1_c05280at 523.895 kb on - strand, within PGA1_c05280at 523.936 kb on - strand, within PGA1_c05280at 523.957 kb on + strand, within PGA1_c05280at 523.957 kb on + strand, within PGA1_c05280at 523.974 kb on + strand, within PGA1_c05280at 523.986 kb on - strand, within PGA1_c05280at 524.113 kb on + strand, within PGA1_c05280at 524.192 kb on + strand, within PGA1_c05280at 524.192 kb on + strand, within PGA1_c05280at 524.193 kb on + strand, within PGA1_c05280at 524.200 kb on - strand, within PGA1_c05280at 524.220 kb on - strand, within PGA1_c05280at 524.235 kb on + strand, within PGA1_c05280at 524.246 kb on - strand, within PGA1_c05280at 524.288 kb on + strand, within PGA1_c05280at 524.288 kb on + strand, within PGA1_c05280at 524.309 kb on - strand, within PGA1_c05280at 524.347 kb on + strand, within PGA1_c05280at 524.355 kb on - strand, within PGA1_c05280at 524.355 kb on - strand, within PGA1_c05280at 524.400 kb on + strand, within PGA1_c05280at 524.400 kb on + strand, within PGA1_c05280at 524.410 kb on + strand, within PGA1_c05280at 524.436 kb on - strand, within PGA1_c05280at 524.463 kb on + strand, within PGA1_c05280at 524.464 kb on + strand, within PGA1_c05280at 524.571 kb on - strand, within PGA1_c05280at 524.578 kb on + strand, within PGA1_c05280at 524.578 kb on + strand, within PGA1_c05280

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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521,533 + -3.7
521,533 + -1.5
521,533 + +0.2
521,538 + -1.8
521,538 + +0.6
521,539 + -1.4
521,540 + -0.4
521,540 + -1.1
521,549 - -0.9
521,615 + -2.3
521,622 + +1.1
521,623 - +0.1
521,671 + +0.4
521,713 - -2.8
521,715 + +2.9
521,723 - -3.2
521,723 - +1.7
521,758 + +0.9
521,804 + PGA1_c05260 0.11 -1.5
521,804 + PGA1_c05260 0.11 -2.1
521,806 - PGA1_c05260 0.11 +1.1
521,823 + PGA1_c05260 0.13 -0.1
521,831 - PGA1_c05260 0.14 +0.7
521,831 - PGA1_c05260 0.14 -0.7
521,839 - PGA1_c05260 0.15 -2.5
521,883 + PGA1_c05260 0.21 -1.3
521,891 - PGA1_c05260 0.23 +1.7
521,891 - PGA1_c05260 0.23 +1.4
521,891 - PGA1_c05260 0.23 -0.4
521,900 - PGA1_c05260 0.24 -0.9
521,905 + PGA1_c05260 0.25 -2.5
521,911 + PGA1_c05260 0.25 -2.8
521,935 + PGA1_c05260 0.29 -2.4
521,947 + PGA1_c05260 0.30 -0.3
521,947 + PGA1_c05260 0.30 -0.9
521,947 + PGA1_c05260 0.30 +0.3
521,947 + PGA1_c05260 0.30 +0.7
521,947 + PGA1_c05260 0.30 +0.7
521,955 - PGA1_c05260 0.31 +1.8
521,955 - PGA1_c05260 0.31 +1.2
521,955 - PGA1_c05260 0.31 +0.9
521,955 - PGA1_c05260 0.31 -0.1
521,955 - PGA1_c05260 0.31 +0.1
521,955 - PGA1_c05260 0.31 -0.9
521,974 + PGA1_c05260 0.34 +0.8
521,983 + PGA1_c05260 0.35 -0.5
521,983 + PGA1_c05260 0.35 +1.7
521,983 + PGA1_c05260 0.35 -0.5
521,983 + PGA1_c05260 0.35 -0.8
521,983 + PGA1_c05260 0.35 -1.7
521,983 + PGA1_c05260 0.35 +1.3
521,983 + PGA1_c05260 0.35 +0.1
521,983 + PGA1_c05260 0.35 -1.8
521,983 + PGA1_c05260 0.35 -1.8
521,986 - PGA1_c05260 0.36 +0.6
521,991 - PGA1_c05260 0.36 +0.7
521,991 - PGA1_c05260 0.36 -2.3
521,991 - PGA1_c05260 0.36 -2.1
521,991 - PGA1_c05260 0.36 +0.1
521,991 - PGA1_c05260 0.36 -1.7
521,991 - PGA1_c05260 0.36 -2.3
521,991 - PGA1_c05260 0.36 -2.0
522,007 + PGA1_c05260 0.39 +0.7
522,015 - PGA1_c05260 0.40 +1.8
522,025 + PGA1_c05260 0.41 -2.1
522,036 - PGA1_c05260 0.43 -0.3
522,040 + PGA1_c05260 0.43 +2.4
522,048 - PGA1_c05260 0.44 -0.9
522,048 - PGA1_c05260 0.44 -0.1
522,097 + PGA1_c05260 0.51 -0.3
522,131 - PGA1_c05260 0.56 +0.1
522,170 - PGA1_c05260 0.61 +0.0
522,170 - PGA1_c05260 0.61 -1.0
522,185 + PGA1_c05260 0.63 -1.7
522,193 - PGA1_c05260 0.64 -3.8
522,195 + PGA1_c05260 0.64 -1.7
522,228 + PGA1_c05260 0.69 +1.1
522,345 + PGA1_c05260 0.85 -1.4
522,353 - PGA1_c05260 0.86 -2.2
522,360 + PGA1_c05260 0.87 +0.5
522,397 + +1.2
522,405 - -2.8
522,420 - +1.3
522,424 + -1.4
522,426 - +0.7
522,455 + +1.9
522,455 + +1.1
522,455 + -1.7
522,455 + -1.4
522,455 + -0.2
522,502 - -1.9
522,555 + -0.8
522,565 - -2.4
522,622 - -2.3
522,662 + PGA1_c05270 0.13 -2.6
522,670 - PGA1_c05270 0.13 -1.4
522,859 + PGA1_c05270 0.31 -3.8
522,867 - PGA1_c05270 0.32 -1.4
522,907 + PGA1_c05270 0.35 +1.6
522,907 + PGA1_c05270 0.35 +1.6
522,954 - PGA1_c05270 0.40 -0.0
522,960 - PGA1_c05270 0.40 -0.8
522,961 + PGA1_c05270 0.40 -0.2
522,987 + PGA1_c05270 0.43 -1.5
522,987 + PGA1_c05270 0.43 -2.5
523,029 + PGA1_c05270 0.47 -2.6
523,029 + PGA1_c05270 0.47 -1.4
523,029 + PGA1_c05270 0.47 -0.4
523,037 + PGA1_c05270 0.47 +0.8
523,037 - PGA1_c05270 0.47 -1.9
523,037 - PGA1_c05270 0.47 +0.3
523,037 - PGA1_c05270 0.47 +1.4
523,148 + PGA1_c05270 0.58 +1.1
523,148 + PGA1_c05270 0.58 +1.7
523,148 + PGA1_c05270 0.58 -2.4
523,148 + PGA1_c05270 0.58 +0.6
523,156 - PGA1_c05270 0.59 -2.3
523,156 - PGA1_c05270 0.59 -1.2
523,251 - PGA1_c05270 0.67 +0.7
523,256 + PGA1_c05270 0.68 -2.7
523,264 - PGA1_c05270 0.69 +1.9
523,344 + PGA1_c05270 0.76 -0.1
523,363 - PGA1_c05270 0.78 +0.9
523,367 + PGA1_c05270 0.78 -1.5
523,370 - PGA1_c05270 0.78 -2.0
523,377 - PGA1_c05270 0.79 -1.3
523,458 + PGA1_c05270 0.87 -3.4
523,458 - PGA1_c05270 0.87 +1.9
523,460 + PGA1_c05270 0.87 -1.7
523,501 - -1.3
523,537 - -1.1
523,548 + +0.5
523,572 + -2.3
523,572 + -1.1
523,577 + +0.8
523,580 - +1.3
523,612 + -0.7
523,614 + -1.7
523,619 + -3.0
523,664 + -3.7
523,676 + -1.8
523,681 + -3.2
523,689 - +1.0
523,707 - -0.7
523,743 - +0.8
523,750 + -1.7
523,814 + PGA1_c05280 0.11 +0.9
523,852 + PGA1_c05280 0.14 -1.1
523,887 + PGA1_c05280 0.17 -0.1
523,887 + PGA1_c05280 0.17 +0.6
523,895 - PGA1_c05280 0.17 -2.1
523,936 - PGA1_c05280 0.20 +0.4
523,957 + PGA1_c05280 0.22 -2.3
523,957 + PGA1_c05280 0.22 +0.0
523,974 + PGA1_c05280 0.23 +1.2
523,986 - PGA1_c05280 0.24 -2.1
524,113 + PGA1_c05280 0.34 -1.5
524,192 + PGA1_c05280 0.40 -2.3
524,192 + PGA1_c05280 0.40 -0.7
524,193 + PGA1_c05280 0.40 -0.4
524,200 - PGA1_c05280 0.41 -1.9
524,220 - PGA1_c05280 0.43 -1.3
524,235 + PGA1_c05280 0.44 +0.7
524,246 - PGA1_c05280 0.45 -2.3
524,288 + PGA1_c05280 0.48 -2.3
524,288 + PGA1_c05280 0.48 -1.0
524,309 - PGA1_c05280 0.49 -2.5
524,347 + PGA1_c05280 0.52 -2.5
524,355 - PGA1_c05280 0.53 -0.4
524,355 - PGA1_c05280 0.53 -0.1
524,400 + PGA1_c05280 0.56 -2.9
524,400 + PGA1_c05280 0.56 +2.1
524,410 + PGA1_c05280 0.57 -1.7
524,436 - PGA1_c05280 0.59 -0.5
524,463 + PGA1_c05280 0.61 +0.1
524,464 + PGA1_c05280 0.61 +0.5
524,571 - PGA1_c05280 0.70 -3.1
524,578 + PGA1_c05280 0.70 +2.2
524,578 + PGA1_c05280 0.70 -1.7

Or see this region's nucleotide sequence