Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_p187g32 and HP15_p187g33 are separated by 6 nucleotides HP15_p187g33 and HP15_p187g34 are separated by 437 nucleotides
HP15_p187g32: HP15_p187g32 - helix-turn-helix- domain containing protein AraC-type, at 24,407 to 25,261
_p187g32
HP15_p187g33: HP15_p187g33 - conserved hypothetical protein, membrane, at 25,268 to 25,681
_p187g33
HP15_p187g34: HP15_p187g34 - uncharacterized conserved protein, HipA-like protein, at 26,119 to 27,468
_p187g34
Position (kb) 25
26 Strain fitness (log2 ratio) -2
-1
0
1
2 at 24.319 kb on - strand at 24.339 kb on + strand at 24.339 kb on + strand at 24.347 kb on - strand at 24.347 kb on - strand at 24.365 kb on + strand at 24.365 kb on + strand at 24.379 kb on - strand at 24.442 kb on - strand at 24.457 kb on + strand at 24.497 kb on - strand, within HP15_p187g32 at 24.593 kb on + strand, within HP15_p187g32 at 24.611 kb on + strand, within HP15_p187g32 at 24.656 kb on + strand, within HP15_p187g32 at 24.699 kb on + strand, within HP15_p187g32 at 24.785 kb on + strand, within HP15_p187g32 at 24.816 kb on - strand, within HP15_p187g32 at 24.816 kb on - strand, within HP15_p187g32 at 24.826 kb on + strand, within HP15_p187g32 at 24.894 kb on + strand, within HP15_p187g32 at 24.894 kb on + strand, within HP15_p187g32 at 24.894 kb on + strand, within HP15_p187g32 at 24.894 kb on + strand, within HP15_p187g32 at 24.894 kb on + strand, within HP15_p187g32 at 24.894 kb on + strand, within HP15_p187g32 at 24.902 kb on - strand, within HP15_p187g32 at 24.902 kb on - strand, within HP15_p187g32 at 24.946 kb on + strand, within HP15_p187g32 at 24.973 kb on + strand, within HP15_p187g32 at 24.981 kb on - strand, within HP15_p187g32 at 25.003 kb on - strand, within HP15_p187g32 at 25.010 kb on + strand, within HP15_p187g32 at 25.017 kb on + strand, within HP15_p187g32 at 25.020 kb on - strand, within HP15_p187g32 at 25.025 kb on - strand, within HP15_p187g32 at 25.032 kb on + strand, within HP15_p187g32 at 25.072 kb on + strand, within HP15_p187g32 at 25.077 kb on + strand, within HP15_p187g32 at 25.206 kb on - strand at 25.206 kb on - strand at 25.213 kb on - strand at 25.237 kb on + strand at 25.251 kb on + strand at 25.253 kb on + strand at 25.277 kb on + strand at 25.331 kb on + strand, within HP15_p187g33 at 25.408 kb on - strand, within HP15_p187g33 at 25.507 kb on + strand, within HP15_p187g33 at 25.515 kb on - strand, within HP15_p187g33 at 25.522 kb on - strand, within HP15_p187g33 at 25.522 kb on - strand, within HP15_p187g33 at 25.539 kb on + strand, within HP15_p187g33 at 25.546 kb on - strand, within HP15_p187g33 at 25.736 kb on + strand at 25.744 kb on - strand at 25.782 kb on + strand at 25.828 kb on - strand at 25.871 kb on + strand at 25.879 kb on - strand at 25.900 kb on + strand at 25.947 kb on - strand at 25.975 kb on + strand at 25.985 kb on - strand at 26.117 kb on + strand at 26.123 kb on + strand at 26.248 kb on + strand at 26.346 kb on + strand, within HP15_p187g34 at 26.356 kb on + strand, within HP15_p187g34 at 26.400 kb on + strand, within HP15_p187g34 at 26.414 kb on + strand, within HP15_p187g34 at 26.525 kb on + strand, within HP15_p187g34 at 26.591 kb on + strand, within HP15_p187g34 at 26.599 kb on - strand, within HP15_p187g34 at 26.599 kb on - strand, within HP15_p187g34
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 24,319 - -0.6 24,339 + +1.7 24,339 + +0.5 24,347 - +0.4 24,347 - -0.1 24,365 + -0.2 24,365 + +0.6 24,379 - +2.2 24,442 - +1.0 24,457 + -0.3 24,497 - HP15_p187g32 0.11 +0.6 24,593 + HP15_p187g32 0.22 +0.4 24,611 + HP15_p187g32 0.24 -0.1 24,656 + HP15_p187g32 0.29 +0.8 24,699 + HP15_p187g32 0.34 +1.0 24,785 + HP15_p187g32 0.44 -0.9 24,816 - HP15_p187g32 0.48 -0.9 24,816 - HP15_p187g32 0.48 +0.2 24,826 + HP15_p187g32 0.49 -0.4 24,894 + HP15_p187g32 0.57 -0.3 24,894 + HP15_p187g32 0.57 -0.5 24,894 + HP15_p187g32 0.57 -0.1 24,894 + HP15_p187g32 0.57 +1.7 24,894 + HP15_p187g32 0.57 -0.9 24,894 + HP15_p187g32 0.57 +0.2 24,902 - HP15_p187g32 0.58 +1.0 24,902 - HP15_p187g32 0.58 +1.0 24,946 + HP15_p187g32 0.63 -0.9 24,973 + HP15_p187g32 0.66 +0.4 24,981 - HP15_p187g32 0.67 +0.3 25,003 - HP15_p187g32 0.70 -0.1 25,010 + HP15_p187g32 0.71 +0.3 25,017 + HP15_p187g32 0.71 -0.9 25,020 - HP15_p187g32 0.72 +0.8 25,025 - HP15_p187g32 0.72 -0.3 25,032 + HP15_p187g32 0.73 +0.6 25,072 + HP15_p187g32 0.78 +0.2 25,077 + HP15_p187g32 0.78 +0.2 25,206 - +0.4 25,206 - +0.5 25,213 - +0.0 25,237 + +0.6 25,251 + +0.3 25,253 + +0.3 25,277 + +0.1 25,331 + HP15_p187g33 0.15 -1.2 25,408 - HP15_p187g33 0.34 -0.2 25,507 + HP15_p187g33 0.58 -1.1 25,515 - HP15_p187g33 0.60 +0.7 25,522 - HP15_p187g33 0.61 -1.2 25,522 - HP15_p187g33 0.61 +0.2 25,539 + HP15_p187g33 0.65 -0.6 25,546 - HP15_p187g33 0.67 +0.5 25,736 + +0.9 25,744 - -0.2 25,782 + -0.9 25,828 - -0.3 25,871 + -0.2 25,879 - -0.7 25,900 + +1.7 25,947 - -0.9 25,975 + -2.2 25,985 - -0.3 26,117 + -1.3 26,123 + +1.2 26,248 + -0.5 26,346 + HP15_p187g34 0.17 +0.9 26,356 + HP15_p187g34 0.18 +0.7 26,400 + HP15_p187g34 0.21 +0.2 26,414 + HP15_p187g34 0.22 -0.2 26,525 + HP15_p187g34 0.30 +0.7 26,591 + HP15_p187g34 0.35 +0.4 26,599 - HP15_p187g34 0.36 -1.2 26,599 - HP15_p187g34 0.36 -0.2
Or see this region's nucleotide sequence