Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_262p00080

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_262p00070 and PGA1_262p00080 are separated by 28 nucleotidesPGA1_262p00080 and PGA1_262p00090 are separated by 7 nucleotides PGA1_262p00070: PGA1_262p00070 - Lipid A core - O-antigen ligase and related enzymes, at 7,972 to 9,258 _262p00070 PGA1_262p00080: PGA1_262p00080 - hypothetical protein, at 9,287 to 10,054 _262p00080 PGA1_262p00090: PGA1_262p00090 - putative exopolysaccharide biosynthesis transport protein, at 10,062 to 12,173 _262p00090 Position (kb) 9 10 11Strain fitness (log2 ratio) -2 -1 0 1 2at 8.287 kb on - strand, within PGA1_262p00070at 8.394 kb on + strand, within PGA1_262p00070at 8.408 kb on + strand, within PGA1_262p00070at 8.481 kb on - strand, within PGA1_262p00070at 8.481 kb on - strand, within PGA1_262p00070at 8.516 kb on - strand, within PGA1_262p00070at 8.895 kb on + strand, within PGA1_262p00070at 8.914 kb on + strand, within PGA1_262p00070at 8.922 kb on - strand, within PGA1_262p00070at 8.926 kb on + strand, within PGA1_262p00070at 8.981 kb on + strand, within PGA1_262p00070at 8.984 kb on + strand, within PGA1_262p00070at 9.007 kb on + strand, within PGA1_262p00070at 9.037 kb on - strand, within PGA1_262p00070at 9.079 kb on - strand, within PGA1_262p00070at 9.103 kb on - strand, within PGA1_262p00070at 9.252 kb on + strandat 9.376 kb on - strand, within PGA1_262p00080at 9.472 kb on - strand, within PGA1_262p00080at 9.540 kb on - strand, within PGA1_262p00080at 9.777 kb on - strand, within PGA1_262p00080at 9.779 kb on + strand, within PGA1_262p00080at 9.779 kb on + strand, within PGA1_262p00080at 9.855 kb on - strand, within PGA1_262p00080at 9.965 kb on - strand, within PGA1_262p00080at 9.983 kb on + strandat 10.051 kb on + strandat 10.065 kb on + strandat 10.123 kb on + strandat 10.131 kb on - strandat 10.213 kb on + strandat 10.221 kb on - strandat 10.545 kb on - strand, within PGA1_262p00090at 10.734 kb on + strand, within PGA1_262p00090at 10.857 kb on - strand, within PGA1_262p00090at 11.039 kb on - strand, within PGA1_262p00090

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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8,287 - PGA1_262p00070 0.24 -0.8
8,394 + PGA1_262p00070 0.33 -2.2
8,408 + PGA1_262p00070 0.34 -1.1
8,481 - PGA1_262p00070 0.40 -0.6
8,481 - PGA1_262p00070 0.40 -1.6
8,516 - PGA1_262p00070 0.42 -1.1
8,895 + PGA1_262p00070 0.72 -0.8
8,914 + PGA1_262p00070 0.73 +0.8
8,922 - PGA1_262p00070 0.74 +2.2
8,926 + PGA1_262p00070 0.74 -1.8
8,981 + PGA1_262p00070 0.78 +2.0
8,984 + PGA1_262p00070 0.79 -0.8
9,007 + PGA1_262p00070 0.80 +2.3
9,037 - PGA1_262p00070 0.83 +0.8
9,079 - PGA1_262p00070 0.86 +1.8
9,103 - PGA1_262p00070 0.88 -0.4
9,252 + +2.4
9,376 - PGA1_262p00080 0.12 -1.9
9,472 - PGA1_262p00080 0.24 -1.4
9,540 - PGA1_262p00080 0.33 +0.2
9,777 - PGA1_262p00080 0.64 -1.2
9,779 + PGA1_262p00080 0.64 -2.2
9,779 + PGA1_262p00080 0.64 +2.0
9,855 - PGA1_262p00080 0.74 -1.2
9,965 - PGA1_262p00080 0.88 -2.3
9,983 + +1.1
10,051 + +2.2
10,065 + +2.0
10,123 + +2.2
10,131 - +0.2
10,213 + +0.6
10,221 - -2.2
10,545 - PGA1_262p00090 0.23 +1.6
10,734 + PGA1_262p00090 0.32 +0.2
10,857 - PGA1_262p00090 0.38 -1.7
11,039 - PGA1_262p00090 0.46 +0.2

Or see this region's nucleotide sequence