Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c03390

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c03380 and PGA1_c03390 are separated by 394 nucleotidesPGA1_c03390 and PGA1_c03400 are separated by 205 nucleotides PGA1_c03380: PGA1_c03380 - putative glycine cleavage system transcriptional activator, at 324,276 to 325,157 _c03380 PGA1_c03390: PGA1_c03390 - acetoacetyl-CoA reductase PhaB, at 325,552 to 326,274 _c03390 PGA1_c03400: PGA1_c03400 - acetyl-CoA:acetyl-CoA C-acetyltransferase / acetyl-CoA:propanoyl-CoA 2-C-acetyltransferase (EC 2.3.1.9; EC 2.3.1.16) (from data), at 326,480 to 327,655 _c03400 Position (kb) 325 326 327Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 324.557 kb on - strand, within PGA1_c03380at 324.557 kb on - strand, within PGA1_c03380at 324.571 kb on + strand, within PGA1_c03380at 324.573 kb on + strand, within PGA1_c03380at 324.615 kb on - strand, within PGA1_c03380at 324.618 kb on - strand, within PGA1_c03380at 324.623 kb on - strand, within PGA1_c03380at 324.680 kb on + strand, within PGA1_c03380at 324.718 kb on + strand, within PGA1_c03380at 324.726 kb on - strand, within PGA1_c03380at 324.726 kb on - strand, within PGA1_c03380at 324.726 kb on - strand, within PGA1_c03380at 324.755 kb on + strand, within PGA1_c03380at 324.763 kb on - strand, within PGA1_c03380at 324.768 kb on + strand, within PGA1_c03380at 324.815 kb on - strand, within PGA1_c03380at 324.820 kb on - strand, within PGA1_c03380at 324.820 kb on - strand, within PGA1_c03380at 324.912 kb on - strand, within PGA1_c03380at 324.951 kb on + strand, within PGA1_c03380at 324.951 kb on + strand, within PGA1_c03380at 324.959 kb on - strand, within PGA1_c03380at 324.959 kb on - strand, within PGA1_c03380at 324.959 kb on - strand, within PGA1_c03380at 324.959 kb on - strand, within PGA1_c03380at 324.959 kb on - strand, within PGA1_c03380at 324.966 kb on - strand, within PGA1_c03380at 324.966 kb on - strand, within PGA1_c03380at 324.984 kb on - strand, within PGA1_c03380at 325.045 kb on - strand, within PGA1_c03380at 325.072 kb on + strandat 325.131 kb on - strandat 325.155 kb on - strandat 325.194 kb on + strandat 325.317 kb on - strandat 325.343 kb on + strandat 325.377 kb on + strandat 325.400 kb on - strandat 325.407 kb on - strandat 325.421 kb on - strandat 325.448 kb on - strandat 325.519 kb on + strandat 325.624 kb on - strandat 325.634 kb on - strand, within PGA1_c03390at 325.634 kb on - strand, within PGA1_c03390at 325.762 kb on + strand, within PGA1_c03390at 325.770 kb on - strand, within PGA1_c03390at 325.791 kb on - strand, within PGA1_c03390at 325.807 kb on + strand, within PGA1_c03390at 325.840 kb on + strand, within PGA1_c03390at 325.843 kb on - strand, within PGA1_c03390at 325.845 kb on - strand, within PGA1_c03390at 325.922 kb on - strand, within PGA1_c03390at 325.922 kb on - strand, within PGA1_c03390at 325.937 kb on + strand, within PGA1_c03390at 325.937 kb on + strand, within PGA1_c03390at 325.945 kb on - strand, within PGA1_c03390at 325.945 kb on - strand, within PGA1_c03390at 325.945 kb on - strand, within PGA1_c03390at 325.945 kb on - strand, within PGA1_c03390at 325.947 kb on - strand, within PGA1_c03390at 325.968 kb on - strand, within PGA1_c03390at 325.988 kb on + strand, within PGA1_c03390at 326.071 kb on - strand, within PGA1_c03390at 326.087 kb on + strand, within PGA1_c03390at 326.094 kb on + strand, within PGA1_c03390at 326.094 kb on + strand, within PGA1_c03390at 326.095 kb on - strand, within PGA1_c03390at 326.191 kb on + strand, within PGA1_c03390at 326.192 kb on + strand, within PGA1_c03390at 326.192 kb on + strand, within PGA1_c03390at 326.192 kb on + strand, within PGA1_c03390at 326.199 kb on - strand, within PGA1_c03390at 326.199 kb on - strand, within PGA1_c03390at 326.200 kb on - strand, within PGA1_c03390at 326.200 kb on - strand, within PGA1_c03390at 326.238 kb on + strandat 326.366 kb on + strandat 326.374 kb on - strandat 326.450 kb on - strandat 326.461 kb on - strandat 326.478 kb on + strandat 326.496 kb on - strandat 326.530 kb on + strandat 326.540 kb on + strandat 326.611 kb on - strand, within PGA1_c03400at 326.675 kb on - strand, within PGA1_c03400at 326.685 kb on + strand, within PGA1_c03400at 326.690 kb on + strand, within PGA1_c03400at 326.690 kb on + strand, within PGA1_c03400at 326.690 kb on + strand, within PGA1_c03400at 326.690 kb on + strand, within PGA1_c03400at 326.690 kb on + strand, within PGA1_c03400at 326.690 kb on + strand, within PGA1_c03400at 326.690 kb on + strand, within PGA1_c03400at 326.690 kb on + strand, within PGA1_c03400at 326.693 kb on - strand, within PGA1_c03400at 326.693 kb on - strand, within PGA1_c03400at 326.693 kb on - strand, within PGA1_c03400at 326.698 kb on - strand, within PGA1_c03400at 326.698 kb on - strand, within PGA1_c03400at 326.698 kb on - strand, within PGA1_c03400at 326.698 kb on - strand, within PGA1_c03400at 326.698 kb on - strand, within PGA1_c03400at 326.698 kb on - strand, within PGA1_c03400at 326.698 kb on - strand, within PGA1_c03400at 326.698 kb on - strand, within PGA1_c03400at 326.698 kb on - strand, within PGA1_c03400at 326.698 kb on - strand, within PGA1_c03400at 326.698 kb on - strand, within PGA1_c03400at 326.759 kb on - strand, within PGA1_c03400at 326.763 kb on + strand, within PGA1_c03400at 326.779 kb on + strand, within PGA1_c03400at 326.788 kb on - strand, within PGA1_c03400at 326.806 kb on + strand, within PGA1_c03400at 326.843 kb on - strand, within PGA1_c03400at 326.848 kb on + strand, within PGA1_c03400at 326.856 kb on - strand, within PGA1_c03400at 326.872 kb on + strand, within PGA1_c03400at 326.882 kb on + strand, within PGA1_c03400at 326.888 kb on - strand, within PGA1_c03400at 326.898 kb on - strand, within PGA1_c03400at 326.944 kb on - strand, within PGA1_c03400at 327.026 kb on + strand, within PGA1_c03400at 327.034 kb on - strand, within PGA1_c03400at 327.058 kb on - strand, within PGA1_c03400at 327.058 kb on - strand, within PGA1_c03400at 327.102 kb on + strand, within PGA1_c03400at 327.102 kb on + strand, within PGA1_c03400at 327.147 kb on - strand, within PGA1_c03400at 327.178 kb on - strand, within PGA1_c03400at 327.179 kb on + strand, within PGA1_c03400at 327.268 kb on - strand, within PGA1_c03400

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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324,557 - PGA1_c03380 0.32 +1.1
324,557 - PGA1_c03380 0.32 -0.7
324,571 + PGA1_c03380 0.33 +1.7
324,573 + PGA1_c03380 0.34 +1.2
324,615 - PGA1_c03380 0.38 +0.9
324,618 - PGA1_c03380 0.39 +0.3
324,623 - PGA1_c03380 0.39 -0.4
324,680 + PGA1_c03380 0.46 +3.2
324,718 + PGA1_c03380 0.50 -2.0
324,726 - PGA1_c03380 0.51 -3.3
324,726 - PGA1_c03380 0.51 -0.7
324,726 - PGA1_c03380 0.51 -0.4
324,755 + PGA1_c03380 0.54 -0.8
324,763 - PGA1_c03380 0.55 -2.3
324,768 + PGA1_c03380 0.56 +0.5
324,815 - PGA1_c03380 0.61 -1.4
324,820 - PGA1_c03380 0.62 -0.0
324,820 - PGA1_c03380 0.62 +2.6
324,912 - PGA1_c03380 0.72 -2.9
324,951 + PGA1_c03380 0.77 -3.3
324,951 + PGA1_c03380 0.77 -2.1
324,959 - PGA1_c03380 0.77 +1.7
324,959 - PGA1_c03380 0.77 +0.8
324,959 - PGA1_c03380 0.77 +0.1
324,959 - PGA1_c03380 0.77 -1.5
324,959 - PGA1_c03380 0.77 +2.0
324,966 - PGA1_c03380 0.78 -0.1
324,966 - PGA1_c03380 0.78 -1.5
324,984 - PGA1_c03380 0.80 -1.9
325,045 - PGA1_c03380 0.87 -1.3
325,072 + +0.0
325,131 - -0.7
325,155 - +0.8
325,194 + -3.2
325,317 - +1.6
325,343 + -2.4
325,377 + -2.7
325,400 - +1.2
325,407 - -1.8
325,421 - +1.9
325,448 - +1.8
325,519 + -1.7
325,624 - +1.1
325,634 - PGA1_c03390 0.11 +1.5
325,634 - PGA1_c03390 0.11 -0.2
325,762 + PGA1_c03390 0.29 +1.5
325,770 - PGA1_c03390 0.30 +1.6
325,791 - PGA1_c03390 0.33 +1.0
325,807 + PGA1_c03390 0.35 +1.7
325,840 + PGA1_c03390 0.40 +3.4
325,843 - PGA1_c03390 0.40 +0.4
325,845 - PGA1_c03390 0.41 +1.0
325,922 - PGA1_c03390 0.51 -2.2
325,922 - PGA1_c03390 0.51 +1.8
325,937 + PGA1_c03390 0.53 +0.9
325,937 + PGA1_c03390 0.53 +1.6
325,945 - PGA1_c03390 0.54 +0.6
325,945 - PGA1_c03390 0.54 +1.8
325,945 - PGA1_c03390 0.54 -0.3
325,945 - PGA1_c03390 0.54 +1.4
325,947 - PGA1_c03390 0.55 +1.4
325,968 - PGA1_c03390 0.58 +4.5
325,988 + PGA1_c03390 0.60 +2.7
326,071 - PGA1_c03390 0.72 +0.5
326,087 + PGA1_c03390 0.74 +3.6
326,094 + PGA1_c03390 0.75 +1.9
326,094 + PGA1_c03390 0.75 +1.9
326,095 - PGA1_c03390 0.75 +1.5
326,191 + PGA1_c03390 0.88 +3.3
326,192 + PGA1_c03390 0.89 +1.4
326,192 + PGA1_c03390 0.89 -1.7
326,192 + PGA1_c03390 0.89 +0.6
326,199 - PGA1_c03390 0.89 -1.4
326,199 - PGA1_c03390 0.89 +2.6
326,200 - PGA1_c03390 0.90 +2.0
326,200 - PGA1_c03390 0.90 -0.3
326,238 + +2.0
326,366 + -0.9
326,374 - +3.1
326,450 - -1.4
326,461 - +0.2
326,478 + +1.0
326,496 - +1.4
326,530 + +2.1
326,540 + +1.9
326,611 - PGA1_c03400 0.11 +1.1
326,675 - PGA1_c03400 0.17 +2.6
326,685 + PGA1_c03400 0.17 -0.7
326,690 + PGA1_c03400 0.18 +2.3
326,690 + PGA1_c03400 0.18 -0.2
326,690 + PGA1_c03400 0.18 +1.9
326,690 + PGA1_c03400 0.18 +0.8
326,690 + PGA1_c03400 0.18 +1.6
326,690 + PGA1_c03400 0.18 +0.9
326,690 + PGA1_c03400 0.18 +0.8
326,690 + PGA1_c03400 0.18 +0.9
326,693 - PGA1_c03400 0.18 +1.9
326,693 - PGA1_c03400 0.18 +0.9
326,693 - PGA1_c03400 0.18 +2.0
326,698 - PGA1_c03400 0.19 +3.3
326,698 - PGA1_c03400 0.19 +2.7
326,698 - PGA1_c03400 0.19 +1.4
326,698 - PGA1_c03400 0.19 +1.7
326,698 - PGA1_c03400 0.19 +2.0
326,698 - PGA1_c03400 0.19 +0.7
326,698 - PGA1_c03400 0.19 +2.0
326,698 - PGA1_c03400 0.19 +0.1
326,698 - PGA1_c03400 0.19 +2.0
326,698 - PGA1_c03400 0.19 +0.7
326,698 - PGA1_c03400 0.19 +2.3
326,759 - PGA1_c03400 0.24 +1.5
326,763 + PGA1_c03400 0.24 +1.6
326,779 + PGA1_c03400 0.25 -0.4
326,788 - PGA1_c03400 0.26 -0.1
326,806 + PGA1_c03400 0.28 +2.2
326,843 - PGA1_c03400 0.31 -0.5
326,848 + PGA1_c03400 0.31 +1.4
326,856 - PGA1_c03400 0.32 -1.4
326,872 + PGA1_c03400 0.33 +1.7
326,882 + PGA1_c03400 0.34 +2.8
326,888 - PGA1_c03400 0.35 +1.4
326,898 - PGA1_c03400 0.36 +3.8
326,944 - PGA1_c03400 0.39 +0.1
327,026 + PGA1_c03400 0.46 +2.8
327,034 - PGA1_c03400 0.47 +1.8
327,058 - PGA1_c03400 0.49 +1.2
327,058 - PGA1_c03400 0.49 -0.4
327,102 + PGA1_c03400 0.53 -2.0
327,102 + PGA1_c03400 0.53 +1.6
327,147 - PGA1_c03400 0.57 -1.5
327,178 - PGA1_c03400 0.59 +0.9
327,179 + PGA1_c03400 0.59 -0.1
327,268 - PGA1_c03400 0.67 +2.1

Or see this region's nucleotide sequence