Strain Fitness in Marinobacter adhaerens HP15 around HP15_290

Experiment: marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_289 and HP15_290 are separated by 42 nucleotidesHP15_290 and HP15_291 are separated by 239 nucleotides HP15_289: HP15_289 - twitching motility protein PilT, at 279,967 to 281,001 _289 HP15_290: HP15_290 - twitching motility protein PilU PilT, at 281,044 to 282,165 _290 HP15_291: HP15_291 - membrane protein involved in aromatic hydrocarbon degradation, at 282,405 to 283,688 _291 Position (kb) 281 282 283Strain fitness (log2 ratio) -2 -1 0 1 2at 280.133 kb on + strand, within HP15_289at 280.251 kb on + strand, within HP15_289at 280.273 kb on + strand, within HP15_289at 280.330 kb on - strand, within HP15_289at 280.337 kb on + strand, within HP15_289at 280.345 kb on - strand, within HP15_289at 280.364 kb on + strand, within HP15_289at 280.536 kb on - strand, within HP15_289at 280.576 kb on - strand, within HP15_289at 280.578 kb on + strand, within HP15_289at 280.640 kb on - strand, within HP15_289at 280.694 kb on - strand, within HP15_289at 280.732 kb on - strand, within HP15_289at 280.866 kb on + strand, within HP15_289at 280.930 kb on - strandat 280.971 kb on + strandat 280.971 kb on + strandat 280.995 kb on + strandat 281.131 kb on - strandat 281.181 kb on + strand, within HP15_290at 281.326 kb on + strand, within HP15_290at 281.397 kb on + strand, within HP15_290at 281.405 kb on - strand, within HP15_290at 281.426 kb on - strand, within HP15_290at 281.451 kb on + strand, within HP15_290at 281.550 kb on + strand, within HP15_290at 281.558 kb on - strand, within HP15_290at 281.560 kb on - strand, within HP15_290at 281.580 kb on + strand, within HP15_290at 281.610 kb on + strand, within HP15_290at 281.618 kb on - strand, within HP15_290at 281.625 kb on - strand, within HP15_290at 281.630 kb on + strand, within HP15_290at 281.641 kb on + strand, within HP15_290at 281.754 kb on + strand, within HP15_290at 281.801 kb on + strand, within HP15_290at 281.834 kb on + strand, within HP15_290at 281.837 kb on - strand, within HP15_290at 281.898 kb on - strand, within HP15_290at 281.903 kb on - strand, within HP15_290at 281.903 kb on - strand, within HP15_290at 281.903 kb on - strand, within HP15_290at 281.945 kb on + strand, within HP15_290at 281.990 kb on + strand, within HP15_290at 282.123 kb on + strandat 282.177 kb on + strandat 282.252 kb on + strandat 282.316 kb on + strandat 282.355 kb on + strandat 282.594 kb on - strand, within HP15_291at 282.594 kb on - strand, within HP15_291at 282.594 kb on - strand, within HP15_291at 282.706 kb on - strand, within HP15_291at 282.725 kb on - strand, within HP15_291at 282.765 kb on - strand, within HP15_291at 282.849 kb on + strand, within HP15_291at 282.898 kb on - strand, within HP15_291at 282.930 kb on + strand, within HP15_291at 282.966 kb on - strand, within HP15_291at 282.981 kb on + strand, within HP15_291at 283.004 kb on - strand, within HP15_291at 283.014 kb on + strand, within HP15_291at 283.022 kb on - strand, within HP15_291at 283.100 kb on - strand, within HP15_291at 283.122 kb on - strand, within HP15_291at 283.122 kb on - strand, within HP15_291at 283.149 kb on + strand, within HP15_291at 283.162 kb on + strand, within HP15_291

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
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280,133 + HP15_289 0.16 -1.1
280,251 + HP15_289 0.27 +0.1
280,273 + HP15_289 0.30 -0.2
280,330 - HP15_289 0.35 +2.1
280,337 + HP15_289 0.36 +0.5
280,345 - HP15_289 0.37 -0.2
280,364 + HP15_289 0.38 -1.0
280,536 - HP15_289 0.55 -0.2
280,576 - HP15_289 0.59 +0.4
280,578 + HP15_289 0.59 -0.7
280,640 - HP15_289 0.65 +0.3
280,694 - HP15_289 0.70 -1.0
280,732 - HP15_289 0.74 -0.9
280,866 + HP15_289 0.87 +0.1
280,930 - -1.2
280,971 + -0.0
280,971 + +0.8
280,995 + -0.2
281,131 - -0.3
281,181 + HP15_290 0.12 -0.4
281,326 + HP15_290 0.25 +0.5
281,397 + HP15_290 0.31 -1.4
281,405 - HP15_290 0.32 -1.2
281,426 - HP15_290 0.34 -0.2
281,451 + HP15_290 0.36 -0.2
281,550 + HP15_290 0.45 +0.4
281,558 - HP15_290 0.46 +0.1
281,560 - HP15_290 0.46 +0.5
281,580 + HP15_290 0.48 +0.2
281,610 + HP15_290 0.50 -0.2
281,618 - HP15_290 0.51 -0.1
281,625 - HP15_290 0.52 -1.7
281,630 + HP15_290 0.52 -1.1
281,641 + HP15_290 0.53 -0.2
281,754 + HP15_290 0.63 +1.0
281,801 + HP15_290 0.67 +0.0
281,834 + HP15_290 0.70 -0.3
281,837 - HP15_290 0.71 -1.3
281,898 - HP15_290 0.76 -0.6
281,903 - HP15_290 0.77 +0.0
281,903 - HP15_290 0.77 +0.4
281,903 - HP15_290 0.77 +0.2
281,945 + HP15_290 0.80 -1.1
281,990 + HP15_290 0.84 -0.7
282,123 + -0.4
282,177 + -0.2
282,252 + -1.6
282,316 + +0.3
282,355 + +0.9
282,594 - HP15_291 0.15 +1.2
282,594 - HP15_291 0.15 -0.9
282,594 - HP15_291 0.15 +0.1
282,706 - HP15_291 0.23 +0.9
282,725 - HP15_291 0.25 -0.5
282,765 - HP15_291 0.28 -0.2
282,849 + HP15_291 0.35 +0.4
282,898 - HP15_291 0.38 +0.5
282,930 + HP15_291 0.41 +0.9
282,966 - HP15_291 0.44 -0.9
282,981 + HP15_291 0.45 -0.6
283,004 - HP15_291 0.47 +0.2
283,014 + HP15_291 0.47 -0.6
283,022 - HP15_291 0.48 +1.0
283,100 - HP15_291 0.54 -1.9
283,122 - HP15_291 0.56 -0.7
283,122 - HP15_291 0.56 -0.3
283,149 + HP15_291 0.58 -0.6
283,162 + HP15_291 0.59 -0.4

Or see this region's nucleotide sequence