Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1923 and HP15_1924 are separated by 0 nucleotides HP15_1924 and HP15_1925 are separated by 126 nucleotides
HP15_1923: HP15_1923 - PEP-CTERM locus polysaccharide chain length determinant, at 2,038,938 to 2,040,518
_1923
HP15_1924: HP15_1924 - polysaccharide export protein, at 2,040,519 to 2,041,067
_1924
HP15_1925: HP15_1925 - undecaprenyl-phosphate galactosephosphotransferase, at 2,041,194 to 2,042,552
_1925
Position (kb)
2040
2041
2042 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2039.707 kb on + strand, within HP15_1923 at 2039.779 kb on + strand, within HP15_1923 at 2039.787 kb on + strand, within HP15_1923 at 2039.787 kb on - strand, within HP15_1923 at 2039.997 kb on - strand, within HP15_1923 at 2040.067 kb on - strand, within HP15_1923 at 2040.067 kb on - strand, within HP15_1923 at 2040.152 kb on + strand, within HP15_1923 at 2040.160 kb on - strand, within HP15_1923 at 2040.214 kb on + strand, within HP15_1923 at 2040.295 kb on + strand, within HP15_1923 at 2040.337 kb on - strand, within HP15_1923 at 2040.358 kb on + strand, within HP15_1923 at 2040.358 kb on + strand, within HP15_1923 at 2040.366 kb on - strand at 2040.366 kb on - strand at 2040.366 kb on - strand at 2040.671 kb on - strand, within HP15_1924 at 2040.695 kb on + strand, within HP15_1924 at 2040.723 kb on + strand, within HP15_1924 at 2040.731 kb on - strand, within HP15_1924 at 2040.731 kb on - strand, within HP15_1924 at 2040.879 kb on - strand, within HP15_1924 at 2040.980 kb on + strand, within HP15_1924 at 2040.993 kb on - strand, within HP15_1924 at 2041.024 kb on - strand at 2041.132 kb on + strand at 2041.140 kb on - strand at 2041.160 kb on + strand at 2041.335 kb on - strand, within HP15_1925 at 2041.439 kb on + strand, within HP15_1925 at 2041.450 kb on + strand, within HP15_1925 at 2041.467 kb on + strand, within HP15_1925 at 2041.540 kb on + strand, within HP15_1925 at 2041.560 kb on + strand, within HP15_1925 at 2041.798 kb on - strand, within HP15_1925 at 2041.798 kb on - strand, within HP15_1925 at 2041.886 kb on + strand, within HP15_1925 at 2041.938 kb on + strand, within HP15_1925 at 2041.946 kb on - strand, within HP15_1925 at 2042.062 kb on - strand, within HP15_1925
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 2,039,707 + HP15_1923 0.49 +0.4 2,039,779 + HP15_1923 0.53 -0.5 2,039,787 + HP15_1923 0.54 +0.1 2,039,787 - HP15_1923 0.54 -0.5 2,039,997 - HP15_1923 0.67 -1.2 2,040,067 - HP15_1923 0.71 +0.3 2,040,067 - HP15_1923 0.71 -0.3 2,040,152 + HP15_1923 0.77 +0.4 2,040,160 - HP15_1923 0.77 -0.3 2,040,214 + HP15_1923 0.81 +0.5 2,040,295 + HP15_1923 0.86 -0.8 2,040,337 - HP15_1923 0.88 -0.3 2,040,358 + HP15_1923 0.90 +0.6 2,040,358 + HP15_1923 0.90 +0.6 2,040,366 - -0.3 2,040,366 - -0.2 2,040,366 - -0.3 2,040,671 - HP15_1924 0.28 +1.0 2,040,695 + HP15_1924 0.32 -0.5 2,040,723 + HP15_1924 0.37 +0.3 2,040,731 - HP15_1924 0.39 +1.0 2,040,731 - HP15_1924 0.39 +0.2 2,040,879 - HP15_1924 0.66 +2.9 2,040,980 + HP15_1924 0.84 +1.1 2,040,993 - HP15_1924 0.86 -0.6 2,041,024 - +0.2 2,041,132 + -0.1 2,041,140 - +0.2 2,041,160 + -0.1 2,041,335 - HP15_1925 0.10 -0.9 2,041,439 + HP15_1925 0.18 -0.5 2,041,450 + HP15_1925 0.19 +0.6 2,041,467 + HP15_1925 0.20 +0.0 2,041,540 + HP15_1925 0.25 +0.8 2,041,560 + HP15_1925 0.27 -0.0 2,041,798 - HP15_1925 0.44 -0.2 2,041,798 - HP15_1925 0.44 -1.3 2,041,886 + HP15_1925 0.51 -0.9 2,041,938 + HP15_1925 0.55 -0.7 2,041,946 - HP15_1925 0.55 -0.1 2,042,062 - HP15_1925 0.64 -0.2
Or see this region's nucleotide sequence