Strain Fitness in Marinobacter adhaerens HP15 around HP15_1391

Experiment: marine broth

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_1390 and HP15_1391 are separated by 13 nucleotidesHP15_1391 and HP15_1392 are separated by 47 nucleotidesHP15_1392 and HP15_1393 are separated by 18 nucleotides HP15_1390: HP15_1390 - peptidase M48, Ste24p, at 1,466,067 to 1,467,344 _1390 HP15_1391: HP15_1391 - hypothetical protein, at 1,467,358 to 1,467,495 _1391 HP15_1392: HP15_1392 - membrane protein containing DUF599, at 1,467,543 to 1,468,283 _1392 HP15_1393: HP15_1393 - thioesterase superfamily protein, at 1,468,302 to 1,468,772 _1393 Position (kb) 1467 1468Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1466.458 kb on + strand, within HP15_1390at 1466.537 kb on - strand, within HP15_1390at 1466.589 kb on + strand, within HP15_1390at 1466.638 kb on + strand, within HP15_1390at 1466.638 kb on + strand, within HP15_1390at 1466.724 kb on + strand, within HP15_1390at 1466.830 kb on + strand, within HP15_1390at 1466.895 kb on + strand, within HP15_1390at 1466.926 kb on - strand, within HP15_1390at 1466.928 kb on + strand, within HP15_1390at 1466.958 kb on + strand, within HP15_1390at 1467.058 kb on + strand, within HP15_1390at 1467.168 kb on - strand, within HP15_1390at 1467.193 kb on + strand, within HP15_1390at 1467.292 kb on + strandat 1467.381 kb on + strand, within HP15_1391at 1467.381 kb on + strand, within HP15_1391at 1467.600 kb on - strandat 1467.660 kb on - strand, within HP15_1392at 1467.740 kb on + strand, within HP15_1392at 1467.753 kb on + strand, within HP15_1392at 1467.811 kb on + strand, within HP15_1392at 1467.811 kb on - strand, within HP15_1392at 1467.819 kb on - strand, within HP15_1392at 1467.830 kb on + strand, within HP15_1392at 1467.888 kb on + strand, within HP15_1392at 1468.078 kb on - strand, within HP15_1392at 1468.156 kb on + strand, within HP15_1392at 1468.216 kb on + strandat 1468.290 kb on + strandat 1468.298 kb on - strandat 1468.347 kb on + strandat 1468.356 kb on - strand, within HP15_1393at 1468.361 kb on - strand, within HP15_1393at 1468.404 kb on + strand, within HP15_1393at 1468.410 kb on - strand, within HP15_1393at 1468.418 kb on + strand, within HP15_1393at 1468.418 kb on + strand, within HP15_1393at 1468.418 kb on + strand, within HP15_1393at 1468.477 kb on + strand, within HP15_1393

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
remove
1,466,458 + HP15_1390 0.31 +0.9
1,466,537 - HP15_1390 0.37 +0.7
1,466,589 + HP15_1390 0.41 +0.1
1,466,638 + HP15_1390 0.45 -0.3
1,466,638 + HP15_1390 0.45 -0.3
1,466,724 + HP15_1390 0.51 +0.5
1,466,830 + HP15_1390 0.60 -0.9
1,466,895 + HP15_1390 0.65 -0.2
1,466,926 - HP15_1390 0.67 +0.4
1,466,928 + HP15_1390 0.67 -0.3
1,466,958 + HP15_1390 0.70 +0.7
1,467,058 + HP15_1390 0.78 +0.0
1,467,168 - HP15_1390 0.86 -0.1
1,467,193 + HP15_1390 0.88 -0.4
1,467,292 + -0.1
1,467,381 + HP15_1391 0.17 +0.3
1,467,381 + HP15_1391 0.17 -1.3
1,467,600 - -1.0
1,467,660 - HP15_1392 0.16 -0.1
1,467,740 + HP15_1392 0.27 +2.3
1,467,753 + HP15_1392 0.28 -0.1
1,467,811 + HP15_1392 0.36 -0.4
1,467,811 - HP15_1392 0.36 -0.4
1,467,819 - HP15_1392 0.37 -1.5
1,467,830 + HP15_1392 0.39 -0.5
1,467,888 + HP15_1392 0.47 +0.2
1,468,078 - HP15_1392 0.72 +0.1
1,468,156 + HP15_1392 0.83 -0.4
1,468,216 + +0.9
1,468,290 + -1.3
1,468,298 - -0.2
1,468,347 + -1.2
1,468,356 - HP15_1393 0.11 -0.8
1,468,361 - HP15_1393 0.13 +0.5
1,468,404 + HP15_1393 0.22 -0.5
1,468,410 - HP15_1393 0.23 -0.4
1,468,418 + HP15_1393 0.25 +0.2
1,468,418 + HP15_1393 0.25 +0.3
1,468,418 + HP15_1393 0.25 -0.8
1,468,477 + HP15_1393 0.37 -3.2

Or see this region's nucleotide sequence