Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1390 and HP15_1391 are separated by 13 nucleotides HP15_1391 and HP15_1392 are separated by 47 nucleotides HP15_1392 and HP15_1393 are separated by 18 nucleotides
HP15_1390: HP15_1390 - peptidase M48, Ste24p, at 1,466,067 to 1,467,344
_1390
HP15_1391: HP15_1391 - hypothetical protein, at 1,467,358 to 1,467,495
_1391
HP15_1392: HP15_1392 - membrane protein containing DUF599, at 1,467,543 to 1,468,283
_1392
HP15_1393: HP15_1393 - thioesterase superfamily protein, at 1,468,302 to 1,468,772
_1393
Position (kb)
1467
1468 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1466.458 kb on + strand, within HP15_1390 at 1466.537 kb on - strand, within HP15_1390 at 1466.589 kb on + strand, within HP15_1390 at 1466.638 kb on + strand, within HP15_1390 at 1466.638 kb on + strand, within HP15_1390 at 1466.724 kb on + strand, within HP15_1390 at 1466.830 kb on + strand, within HP15_1390 at 1466.895 kb on + strand, within HP15_1390 at 1466.926 kb on - strand, within HP15_1390 at 1466.928 kb on + strand, within HP15_1390 at 1466.958 kb on + strand, within HP15_1390 at 1467.058 kb on + strand, within HP15_1390 at 1467.168 kb on - strand, within HP15_1390 at 1467.193 kb on + strand, within HP15_1390 at 1467.292 kb on + strand at 1467.381 kb on + strand, within HP15_1391 at 1467.381 kb on + strand, within HP15_1391 at 1467.600 kb on - strand at 1467.660 kb on - strand, within HP15_1392 at 1467.740 kb on + strand, within HP15_1392 at 1467.753 kb on + strand, within HP15_1392 at 1467.811 kb on + strand, within HP15_1392 at 1467.811 kb on - strand, within HP15_1392 at 1467.819 kb on - strand, within HP15_1392 at 1467.830 kb on + strand, within HP15_1392 at 1467.888 kb on + strand, within HP15_1392 at 1468.078 kb on - strand, within HP15_1392 at 1468.156 kb on + strand, within HP15_1392 at 1468.216 kb on + strand at 1468.290 kb on + strand at 1468.298 kb on - strand at 1468.347 kb on + strand at 1468.356 kb on - strand, within HP15_1393 at 1468.361 kb on - strand, within HP15_1393 at 1468.404 kb on + strand, within HP15_1393 at 1468.410 kb on - strand, within HP15_1393 at 1468.418 kb on + strand, within HP15_1393 at 1468.418 kb on + strand, within HP15_1393 at 1468.418 kb on + strand, within HP15_1393 at 1468.477 kb on + strand, within HP15_1393
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 1,466,458 + HP15_1390 0.31 +0.9 1,466,537 - HP15_1390 0.37 +0.7 1,466,589 + HP15_1390 0.41 +0.1 1,466,638 + HP15_1390 0.45 -0.3 1,466,638 + HP15_1390 0.45 -0.3 1,466,724 + HP15_1390 0.51 +0.5 1,466,830 + HP15_1390 0.60 -0.9 1,466,895 + HP15_1390 0.65 -0.2 1,466,926 - HP15_1390 0.67 +0.4 1,466,928 + HP15_1390 0.67 -0.3 1,466,958 + HP15_1390 0.70 +0.7 1,467,058 + HP15_1390 0.78 +0.0 1,467,168 - HP15_1390 0.86 -0.1 1,467,193 + HP15_1390 0.88 -0.4 1,467,292 + -0.1 1,467,381 + HP15_1391 0.17 +0.3 1,467,381 + HP15_1391 0.17 -1.3 1,467,600 - -1.0 1,467,660 - HP15_1392 0.16 -0.1 1,467,740 + HP15_1392 0.27 +2.3 1,467,753 + HP15_1392 0.28 -0.1 1,467,811 + HP15_1392 0.36 -0.4 1,467,811 - HP15_1392 0.36 -0.4 1,467,819 - HP15_1392 0.37 -1.5 1,467,830 + HP15_1392 0.39 -0.5 1,467,888 + HP15_1392 0.47 +0.2 1,468,078 - HP15_1392 0.72 +0.1 1,468,156 + HP15_1392 0.83 -0.4 1,468,216 + +0.9 1,468,290 + -1.3 1,468,298 - -0.2 1,468,347 + -1.2 1,468,356 - HP15_1393 0.11 -0.8 1,468,361 - HP15_1393 0.13 +0.5 1,468,404 + HP15_1393 0.22 -0.5 1,468,410 - HP15_1393 0.23 -0.4 1,468,418 + HP15_1393 0.25 +0.2 1,468,418 + HP15_1393 0.25 +0.3 1,468,418 + HP15_1393 0.25 -0.8 1,468,477 + HP15_1393 0.37 -3.2
Or see this region's nucleotide sequence