Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c14190 and PGA1_c14200 are separated by 273 nucleotides PGA1_c14200 and PGA1_c14210 are separated by 147 nucleotides
PGA1_c14190: PGA1_c14190 - putative transcriptional regulator, AraC family, at 1,473,948 to 1,474,772
_c14190
PGA1_c14200: PGA1_c14200 - tRNA delta(2)-isopentenylpyrophosphate transferase MiaA, at 1,475,046 to 1,475,918
_c14200
PGA1_c14210: PGA1_c14210 - uridylate kinase PyrH, at 1,476,066 to 1,476,815
_c14210
Position (kb)
1475
1476 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1474.055 kb on - strand, within PGA1_c14190 at 1474.085 kb on + strand, within PGA1_c14190 at 1474.093 kb on - strand, within PGA1_c14190 at 1474.093 kb on - strand, within PGA1_c14190 at 1474.114 kb on + strand, within PGA1_c14190 at 1474.150 kb on + strand, within PGA1_c14190 at 1474.199 kb on + strand, within PGA1_c14190 at 1474.220 kb on + strand, within PGA1_c14190 at 1474.264 kb on + strand, within PGA1_c14190 at 1474.264 kb on + strand, within PGA1_c14190 at 1474.272 kb on - strand, within PGA1_c14190 at 1474.272 kb on - strand at 1474.309 kb on + strand, within PGA1_c14190 at 1474.317 kb on - strand, within PGA1_c14190 at 1474.360 kb on + strand, within PGA1_c14190 at 1474.401 kb on - strand, within PGA1_c14190 at 1474.420 kb on + strand, within PGA1_c14190 at 1474.452 kb on - strand, within PGA1_c14190 at 1474.502 kb on + strand, within PGA1_c14190 at 1474.510 kb on - strand, within PGA1_c14190 at 1474.519 kb on + strand, within PGA1_c14190 at 1474.519 kb on + strand, within PGA1_c14190 at 1474.593 kb on + strand, within PGA1_c14190 at 1474.601 kb on - strand, within PGA1_c14190 at 1474.601 kb on - strand, within PGA1_c14190 at 1474.634 kb on + strand, within PGA1_c14190 at 1474.635 kb on + strand, within PGA1_c14190 at 1474.697 kb on + strand at 1474.743 kb on - strand at 1474.778 kb on + strand at 1474.784 kb on + strand at 1474.792 kb on - strand at 1474.797 kb on - strand at 1474.896 kb on - strand at 1474.896 kb on - strand at 1474.974 kb on - strand at 1474.974 kb on - strand at 1475.006 kb on - strand at 1475.020 kb on + strand at 1475.042 kb on + strand at 1475.957 kb on + strand at 1475.957 kb on + strand at 1475.957 kb on + strand at 1475.960 kb on - strand at 1475.965 kb on - strand at 1475.997 kb on + strand at 1476.812 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 1,474,055 - PGA1_c14190 0.13 +0.5 1,474,085 + PGA1_c14190 0.17 +1.2 1,474,093 - PGA1_c14190 0.18 +2.4 1,474,093 - PGA1_c14190 0.18 +2.0 1,474,114 + PGA1_c14190 0.20 +1.7 1,474,150 + PGA1_c14190 0.24 -2.9 1,474,199 + PGA1_c14190 0.30 +2.1 1,474,220 + PGA1_c14190 0.33 -0.1 1,474,264 + PGA1_c14190 0.38 -0.8 1,474,264 + PGA1_c14190 0.38 +2.8 1,474,272 - PGA1_c14190 0.39 -0.4 1,474,272 - +1.6 1,474,309 + PGA1_c14190 0.44 -0.4 1,474,317 - PGA1_c14190 0.45 +2.9 1,474,360 + PGA1_c14190 0.50 +1.6 1,474,401 - PGA1_c14190 0.55 +0.8 1,474,420 + PGA1_c14190 0.57 +0.7 1,474,452 - PGA1_c14190 0.61 -1.4 1,474,502 + PGA1_c14190 0.67 +1.8 1,474,510 - PGA1_c14190 0.68 -1.7 1,474,519 + PGA1_c14190 0.69 -1.9 1,474,519 + PGA1_c14190 0.69 +1.9 1,474,593 + PGA1_c14190 0.78 +0.7 1,474,601 - PGA1_c14190 0.79 +2.3 1,474,601 - PGA1_c14190 0.79 +1.1 1,474,634 + PGA1_c14190 0.83 +0.3 1,474,635 + PGA1_c14190 0.83 -0.4 1,474,697 + +1.2 1,474,743 - -1.2 1,474,778 + +3.5 1,474,784 + +0.2 1,474,792 - +2.0 1,474,797 - +2.0 1,474,896 - -0.6 1,474,896 - -1.2 1,474,974 - +1.0 1,474,974 - +2.2 1,475,006 - -2.8 1,475,020 + +3.2 1,475,042 + -1.3 1,475,957 + +2.3 1,475,957 + -1.2 1,475,957 + +0.5 1,475,960 - +1.1 1,475,965 - +1.7 1,475,997 + -2.1 1,476,812 - -1.0
Or see this region's nucleotide sequence