Strain Fitness in Shewanella amazonensis SB2B around Sama_3556

Experiment: L-Threonine (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Threonine (N)
4,189,240	-				-2.2
4,189,315	+				+0.1
4,189,315	+				-0.1
4,189,352	+				-2.0
4,189,352	+				-0.6
4,189,353	-				+1.6
4,189,355	+				-0.9
4,189,356	-				+0.6
4,189,367	+				-0.3
4,189,367	+				-0.2
4,189,369	+				-1.0
4,189,369	+				-2.1
4,189,369	+				-0.4
4,189,369	+				-1.1
4,189,369	+				-0.6
4,189,369	+				-0.9
4,189,369	+				-0.2
4,189,369	+				+0.9
4,189,369	+				-0.2
4,189,369	+				-0.3
4,189,369	+				-0.1
4,189,369	+				-2.1
4,189,369	+				+0.9
4,189,369	+				-0.1
4,189,370	-				-0.8
4,189,370	-				-1.0
4,189,370	-				+0.6
4,189,370	-				-2.5
4,189,370	-				-0.8
4,189,370	-				-1.1
4,189,370	-				-0.4
4,189,380	-				-0.3
4,189,380	-				+0.1
4,189,380	-				-0.0
4,189,380	-				-0.4
4,189,454	+		Sama_3555	0.24	-0.6
4,189,454	+		Sama_3555	0.24	-0.7
4,189,455	-		Sama_3555	0.24	+0.9
4,189,455	-		Sama_3555	0.24	+0.1
4,189,455	-		Sama_3555	0.24	+1.3
4,189,565	+		Sama_3555	0.61	+0.2
4,189,565	+		Sama_3555	0.61	-0.5
4,189,565	+		Sama_3555	0.61	-0.7
4,189,566	-		Sama_3555	0.61	+1.3
4,189,566	-		Sama_3555	0.61	+0.3
4,189,566	-		Sama_3555	0.61	-1.1
4,189,566	-		Sama_3555	0.61	-0.7
4,189,566	-		Sama_3555	0.61	-0.5
4,189,566	-		Sama_3555	0.61	+0.2
4,189,566	-		Sama_3555	0.61	+0.6
4,189,566	-		Sama_3555	0.61	-0.1
4,189,566	-		Sama_3555	0.61	+0.5
4,189,583	-		Sama_3555	0.67	+0.5
4,189,583	-		Sama_3555	0.67	+1.3
4,189,583	-		Sama_3555	0.67	+0.9
4,189,668	-				-1.4
4,189,674	+				+0.3
4,189,675	-				-0.4
4,189,716	-				+0.4
4,189,770	+				-0.6
4,189,770	+				+1.4
4,189,771	-				-1.2
4,189,771	-				-1.6
4,189,771	-				+0.5
4,189,930	-				-0.5
4,189,930	-				+0.8
4,189,952	+				-1.4
4,189,953	-				-1.1
4,189,953	-				-1.4
4,189,990	+				-0.4
4,189,990	+				+0.4
4,189,990	+				-0.1
4,189,990	+				+0.6
4,189,990	+				-0.9
4,189,991	-				+0.4
4,189,991	-				+1.2
4,189,991	-				-0.9
4,189,991	-				-0.5
4,189,991	-				-0.4
4,189,991	-				+1.2
4,189,991	-				+0.6
4,190,095	+				+0.9
4,190,144	+				-1.4
4,190,144	+				-0.6
4,190,145	-				-0.2
4,190,145	-				+0.0
4,190,164	+				+2.0
4,190,165	-				+0.4
4,190,165	-				+1.9
4,190,165	-				-1.8
4,190,186	-				+1.1
4,190,186	-				-0.9
4,190,186	-				-0.1
4,190,186	-				-1.2
4,190,208	+				-1.5
4,190,208	+				+0.3
4,190,208	+				+0.3
4,190,208	+				+0.5
4,190,209	-				-1.3
4,190,209	-				-0.2
4,190,209	-				+0.5
4,190,209	-				-0.7
4,190,250	+				+0.7
4,190,251	-				-1.0
4,190,290	-				+2.4
4,190,328	+				+0.8
4,190,382	+		Sama_3556	0.14	+0.6
4,190,394	+		Sama_3556	0.16	+0.5
4,190,457	+		Sama_3556	0.22	-1.5
4,190,458	-		Sama_3556	0.22	-0.6
4,190,458	-		Sama_3556	0.22	-0.5
4,190,458	-		Sama_3556	0.22	-0.5
4,190,458	-		Sama_3556	0.22	+0.1
4,190,489	+		Sama_3556	0.25	+0.9
4,190,490	-		Sama_3556	0.25	-1.5
4,190,500	+		Sama_3556	0.26	+1.1
4,190,501	-		Sama_3556	0.26	-0.7
4,190,611	+		Sama_3556	0.37	+0.1
4,190,681	+		Sama_3556	0.44	-0.0
4,190,681	+		Sama_3556	0.44	+0.6
4,190,681	+		Sama_3556	0.44	-0.7
4,190,681	+		Sama_3556	0.44	-1.1
4,190,681	+		Sama_3556	0.44	+0.6
4,190,681	+		Sama_3556	0.44	+2.4
4,190,682	-		Sama_3556	0.44	+0.3
4,190,682	-		Sama_3556	0.44	-1.7
4,190,682	-		Sama_3556	0.44	+0.3
4,190,682	-		Sama_3556	0.44	+0.9
4,190,685	+		Sama_3556	0.45	-0.7
4,190,685	+		Sama_3556	0.45	+0.3
4,190,686	-		Sama_3556	0.45	-0.2
4,190,686	-		Sama_3556	0.45	+1.5
4,190,686	-		Sama_3556	0.45	+1.5
4,190,705	+		Sama_3556	0.47	+1.9
4,190,778	+		Sama_3556	0.54	+0.7
4,190,779	-		Sama_3556	0.54	+0.1
4,190,779	-		Sama_3556	0.54	+0.1
4,190,779	-		Sama_3556	0.54	-0.4
4,190,801	+		Sama_3556	0.56	-1.9
4,190,802	-		Sama_3556	0.56	-0.4
4,190,810	+		Sama_3556	0.57	-0.7
4,190,811	-		Sama_3556	0.57	-1.3
4,190,871	-		Sama_3556	0.63	-0.8
4,190,913	+		Sama_3556	0.67	+1.9
4,190,967	+		Sama_3556	0.73	+0.7
4,190,967	+		Sama_3556	0.73	-1.0
4,190,967	+		Sama_3556	0.73	+0.1
4,190,967	+		Sama_3556	0.73	-0.0
4,190,967	+		Sama_3556	0.73	-0.7
4,190,967	+		Sama_3556	0.73	+0.4
4,190,967	+		Sama_3556	0.73	-0.1
4,190,968	-		Sama_3556	0.73	+1.3
4,190,968	-		Sama_3556	0.73	+1.4
4,190,968	-		Sama_3556	0.73	-0.2
4,191,039	+		Sama_3556	0.80	-0.0
4,191,039	+		Sama_3556	0.80	-0.4
4,191,039	+		Sama_3556	0.80	-0.1
4,191,039	+		Sama_3556	0.80	-0.8
4,191,081	+		Sama_3556	0.84	-1.9
4,191,169	-				+0.1
4,191,179	+				-0.8
4,191,217	-				+1.6
4,191,220	-				+1.5
4,191,220	-				-1.0
4,191,220	-				-0.1
4,191,261	+				+1.6
4,191,292	+				-0.7
4,191,292	+				+0.7
4,191,292	+				-1.0
4,191,292	+				+0.7
4,191,293	-				+1.4
4,191,293	-				+0.1
4,191,293	-				+0.6
4,191,293	-				+0.1
4,191,293	-				-0.5
4,191,420	-		Sama_3557	0.29	+0.9
4,191,420	-		Sama_3557	0.29	-0.1
4,191,434	+		Sama_3557	0.32	-0.9
4,191,451	+		Sama_3557	0.36	-0.9
4,191,451	+		Sama_3557	0.36	-0.4
4,191,451	+		Sama_3557	0.36	+0.0
4,191,451	+		Sama_3557	0.36	+0.4
4,191,452	-		Sama_3557	0.36	+0.1
4,191,452	-		Sama_3557	0.36	+1.6
4,191,515	+		Sama_3557	0.50	-0.4
4,191,515	+		Sama_3557	0.50	+0.1
4,191,542	+		Sama_3557	0.56	-2.1
4,191,542	+		Sama_3557	0.56	-0.7
4,191,608	+		Sama_3557	0.70	-0.5
4,191,608	+		Sama_3557	0.70	+0.4
4,191,609	-		Sama_3557	0.71	-0.4
4,191,609	-		Sama_3557	0.71	-0.5
4,191,609	-		Sama_3557	0.71	+0.4
4,191,609	-		Sama_3557	0.71	-1.1
4,191,630	+		Sama_3557	0.75	-0.7
4,191,630	+		Sama_3557	0.75	+3.0
4,191,630	+		Sama_3557	0.75	-1.6
4,191,630	+		Sama_3557	0.75	+0.7
4,191,630	+		Sama_3557	0.75	-1.0
4,191,630	+		Sama_3557	0.75	+0.7
4,191,630	+		Sama_3557	0.75	-1.0
4,191,630	+		Sama_3557	0.75	-1.5
4,191,630	+		Sama_3557	0.75	+0.1
4,191,630	+		Sama_3557	0.75	-1.0
4,191,631	-		Sama_3557	0.76	+0.1
4,191,631	-		Sama_3557	0.76	-0.8
4,191,631	-		Sama_3557	0.76	+0.3
4,191,631	-		Sama_3557	0.76	-0.4
4,191,631	-		Sama_3557	0.76	+0.3
4,191,631	-		Sama_3557	0.76	-1.9
4,191,631	-		Sama_3557	0.76	-0.3
4,191,631	-		Sama_3557	0.76	-0.2
4,191,631	-		Sama_3557	0.76	+0.1
4,191,631	-		Sama_3557	0.76	+0.7
4,191,631	-		Sama_3557	0.76	-1.3
4,191,698	+				-0.8
4,191,699	-				+0.7
4,191,764	+				+2.3
4,191,764	+				+1.5
4,191,764	+				-0.4
4,191,764	+				-0.3
4,191,764	+				-1.4
4,191,764	+				-0.9
4,191,764	+				+0.6
4,191,764	+				+2.1
4,191,764	+				-0.6
4,191,764	+				-1.1
4,191,765	-				-0.4
4,191,765	-				+0.3
4,191,765	-				-0.9
4,191,765	-				-1.9
4,191,765	-				+1.0
4,191,765	-				+0.2
4,191,765	-				+1.1
4,191,765	-				+0.4
4,191,765	-				-0.2
4,191,765	-				-0.1
4,191,765	-				+1.3
4,191,765	-				+0.0
4,191,765	-				+0.0
4,191,765	-				+1.2
4,191,765	-				-0.0
4,191,765	-				-0.4
4,191,765	-				-0.1
4,191,765	-				-0.3
4,191,766	+				+0.9
4,191,767	-				+0.1
4,191,767	-				-1.7
4,191,815	-				+1.4
4,191,826	+				+0.4
4,191,880	+				+0.6
4,191,911	+				-2.4
4,191,911	+				-0.1
4,191,911	+				-0.9
4,191,911	+				-0.1
4,191,911	+				-0.4
4,191,911	+				-0.1
4,191,911	+				+1.8
4,191,911	+				-0.4
4,191,911	+				-0.2
4,191,911	+				-0.8
4,191,911	+				-0.7
4,191,911	+				-0.7
4,191,912	-				-0.3
4,191,912	-				-0.6
4,191,912	-				+1.8
4,191,912	-				+2.0
4,191,912	-				-0.4
4,191,912	-				-0.3
4,191,912	-				-0.7
4,191,946	+				+0.2
4,191,946	+				-0.9
4,191,959	+				+0.0
4,191,959	+				-0.4
4,191,960	-				-0.4
4,191,967	-				-0.4
4,191,967	-				+0.1
4,191,968	+				-0.9
4,191,980	-				-1.4
4,191,985	+				-1.2
4,191,986	-				-1.0
4,191,992	+				-0.9
4,192,000	+				+1.2
4,192,000	+				-0.2
4,192,000	+				-1.9
4,192,001	-				+0.6
4,192,013	+				+1.6
4,192,013	+				-0.4
4,192,014	-				-1.7
4,192,200	-		Sama_3558	0.14	+0.1