Strain Fitness in Shewanella amazonensis SB2B around Sama_3343

Experiment: L-Threonine (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Threonine (N)
3,970,317	+		Sama_3342	0.44	-1.3
3,970,317	+		Sama_3342	0.44	-0.1
3,970,317	+		Sama_3342	0.44	-1.5
3,970,352	-		Sama_3342	0.47	+0.0
3,970,352	-		Sama_3342	0.47	-0.6
3,970,352	-		Sama_3342	0.47	+1.3
3,970,454	+		Sama_3342	0.55	+1.9
3,970,521	-		Sama_3342	0.61	+0.7
3,970,521	-		Sama_3342	0.61	-1.3
3,970,521	-		Sama_3342	0.61	+0.2
3,970,528	+		Sama_3342	0.61	+0.8
3,970,528	+		Sama_3342	0.61	-0.2
3,970,528	+		Sama_3342	0.61	-0.9
3,970,529	-		Sama_3342	0.61	+0.3
3,970,554	+		Sama_3342	0.63	-0.4
3,970,554	+		Sama_3342	0.63	+0.0
3,970,554	+		Sama_3342	0.63	-0.1
3,970,554	+		Sama_3342	0.63	+1.2
3,970,554	+		Sama_3342	0.63	-1.4
3,970,555	-		Sama_3342	0.64	-1.9
3,970,555	-		Sama_3342	0.64	+0.4
3,970,555	-		Sama_3342	0.64	+0.1
3,970,555	-		Sama_3342	0.64	+0.7
3,970,690	+		Sama_3342	0.75	-1.9
3,970,690	+		Sama_3342	0.75	-0.7
3,970,690	+		Sama_3342	0.75	-1.4
3,970,690	+		Sama_3342	0.75	-1.7
3,970,690	+		Sama_3342	0.75	+0.4
3,970,691	-		Sama_3342	0.75	-0.6
3,970,691	-		Sama_3342	0.75	+0.0
3,970,691	-		Sama_3342	0.75	+0.3
3,970,691	-		Sama_3342	0.75	-0.3
3,970,691	-		Sama_3342	0.75	-0.6
3,970,691	-		Sama_3342	0.75	-0.9
3,970,703	+		Sama_3342	0.76	-1.0
3,970,710	+		Sama_3342	0.76	-0.5
3,970,710	+		Sama_3342	0.76	-0.6
3,970,710	+		Sama_3342	0.76	+0.6
3,970,710	+		Sama_3342	0.76	-1.6
3,970,710	+		Sama_3342	0.76	+0.2
3,970,711	-		Sama_3342	0.76	+2.0
3,970,711	-		Sama_3342	0.76	-0.5
3,970,711	-		Sama_3342	0.76	-0.1
3,970,711	-		Sama_3342	0.76	-0.7
3,970,739	+		Sama_3342	0.79	+0.3
3,970,739	+		Sama_3342	0.79	-0.1
3,970,740	-		Sama_3342	0.79	+0.6
3,970,743	+		Sama_3342	0.79	+2.6
3,970,743	+		Sama_3342	0.79	-2.6
3,970,743	+		Sama_3342	0.79	-0.4
3,970,743	+		Sama_3342	0.79	-0.8
3,970,744	-		Sama_3342	0.79	-1.4
3,970,744	-		Sama_3342	0.79	+0.7
3,970,744	-		Sama_3342	0.79	-0.4
3,970,744	-		Sama_3342	0.79	-1.0
3,970,744	-		Sama_3342	0.79	+0.2
3,970,744	-		Sama_3342	0.79	+0.9
3,970,744	-		Sama_3342	0.79	-1.0
3,970,744	-		Sama_3342	0.79	-0.6
3,970,744	-		Sama_3342	0.79	-0.9
3,970,744	-		Sama_3342	0.79	-1.0
3,970,779	+		Sama_3342	0.82	+0.4
3,970,779	+		Sama_3342	0.82	-0.7
3,970,780	-		Sama_3342	0.82	-0.5
3,970,798	+		Sama_3342	0.84	-0.4
3,970,825	+		Sama_3342	0.86	-2.0
3,970,825	+		Sama_3342	0.86	+0.4
3,970,826	-		Sama_3342	0.86	-1.7
3,970,826	-		Sama_3342	0.86	+1.5
3,970,859	+		Sama_3342	0.89	-0.9
3,970,859	+		Sama_3342	0.89	+1.7
3,970,860	-		Sama_3342	0.89	-0.1
3,970,860	-		Sama_3342	0.89	-0.6
3,970,860	-		Sama_3342	0.89	+1.0
3,970,891	-				+0.6
3,970,891	-				-0.7
3,970,891	-				+0.3
3,970,891	-				-1.2
3,970,901	+				+0.9
3,970,901	+				+0.2
3,970,997	+				+0.9
3,970,997	+				-0.4
3,970,997	+				-1.1
3,970,997	+				-0.6
3,970,997	+				+1.6
3,970,997	+				-1.7
3,970,997	+				+1.2
3,970,998	-				-0.9
3,971,009	-				+0.0
3,971,009	-				-0.6
3,971,012	+				+0.6
3,971,012	+				+2.7
3,971,013	-				+0.4
3,971,013	-				+0.3
3,971,013	-				-1.5
3,971,013	-				+0.6
3,971,013	-				+0.6
3,971,054	-				-2.2
3,971,098	-				+0.5
3,971,098	-				-0.3
3,971,098	-				-0.6
3,971,129	+				+1.2
3,971,129	+				+0.7
3,971,129	+				-0.9
3,971,130	-				-0.4
3,971,130	-				+0.6
3,971,142	+				-0.6
3,971,142	+				-1.3
3,971,142	+				+0.0
3,971,142	+				+1.9
3,971,142	+				-1.1
3,971,143	-				+0.4
3,971,143	-				-0.2
3,971,143	-				-1.5
3,971,143	-				-2.3
3,971,143	-				+0.5
3,971,143	-				+1.4
3,971,155	+				+1.0
3,971,155	+				-1.6
3,971,155	+				-0.0
3,971,156	-				-0.8
3,971,156	-				-1.9
3,971,156	-				+0.0
3,971,158	+				-0.4
3,971,158	+				-0.4
3,971,158	+				+1.3
3,971,158	+				+1.4
3,971,158	+				-0.3
3,971,158	+				-0.6
3,971,158	+				-0.2
3,971,158	+				+1.1
3,971,158	+				+0.1
3,971,159	-				+0.3
3,971,159	-				+0.5
3,971,159	-				-0.1
3,971,159	-				-1.6
3,971,207	+				+0.5
3,971,208	-				-1.3
3,971,254	-				+0.0
3,971,265	+				-0.9
3,971,265	+				-0.4
3,971,266	-				-2.0
3,971,266	-				-1.6
3,971,266	-				+1.1
3,971,268	+				+0.4
3,971,268	+				-0.7
3,971,268	+				-0.6
3,971,268	+				+0.4
3,971,268	+				+1.8
3,971,269	-				-1.1
3,971,269	-				-0.2
3,971,269	-				-0.4
3,971,269	-				+1.1
3,971,269	-				+1.3
3,971,273	-				-0.7
3,971,289	+				+0.6
3,971,289	+				+0.3
3,971,289	+				+0.2
3,971,289	+				+1.0
3,971,289	+				-1.6
3,971,289	+				+1.0
3,971,290	-				+0.0
3,971,290	-				-0.7
3,971,290	-				+0.4
3,971,290	-				-0.4
3,971,290	-				+1.7
3,971,290	-				+1.5
3,971,290	-				-1.1
3,971,290	-				-0.1
3,971,361	+		Sama_3343	0.13	-0.1
3,971,362	-		Sama_3343	0.13	-0.6
3,971,362	-		Sama_3343	0.13	-0.7
3,971,362	-		Sama_3343	0.13	+0.8
3,971,420	+		Sama_3343	0.24	-0.6
3,971,421	-		Sama_3343	0.24	+0.9
3,971,451	+		Sama_3343	0.30	-0.8
3,971,497	-		Sama_3343	0.38	-1.1
3,971,542	+		Sama_3343	0.47	+0.3
3,971,542	+		Sama_3343	0.47	+1.0
3,971,543	-		Sama_3343	0.47	+0.3
3,971,543	-		Sama_3343	0.47	-0.1
3,971,543	-		Sama_3343	0.47	+1.1
3,971,543	-		Sama_3343	0.47	+0.5
3,971,543	-		Sama_3343	0.47	+1.3
3,971,543	-		Sama_3343	0.47	+0.9
3,971,543	-		Sama_3343	0.47	-0.8
3,971,543	-		Sama_3343	0.47	-0.7
3,971,585	-		Sama_3343	0.55	+1.2
3,971,585	-		Sama_3343	0.55	-0.3
3,971,599	+		Sama_3343	0.57	-0.2
3,971,599	+		Sama_3343	0.57	-1.1
3,971,600	-		Sama_3343	0.57	-1.0
3,971,600	-		Sama_3343	0.57	+0.4
3,971,600	-		Sama_3343	0.57	+1.2
3,971,666	+		Sama_3343	0.70	+0.6
3,971,666	+		Sama_3343	0.70	-1.6
3,971,667	-		Sama_3343	0.70	-0.5
3,971,667	-		Sama_3343	0.70	-0.0
3,971,667	-		Sama_3343	0.70	-2.1
3,971,667	-		Sama_3343	0.70	-0.6
3,971,706	+		Sama_3343	0.77	-0.4
3,971,706	+		Sama_3343	0.77	+0.0
3,971,707	-		Sama_3343	0.77	-1.4
3,971,725	+		Sama_3343	0.81	+0.7
3,971,734	+		Sama_3343	0.82	-1.2
3,971,734	+		Sama_3343	0.82	-0.2
3,971,734	+		Sama_3343	0.82	+0.2
3,971,735	-		Sama_3343	0.82	-1.3
3,971,735	-		Sama_3343	0.82	-1.9
3,971,735	-		Sama_3343	0.82	-0.6
3,971,735	-		Sama_3343	0.82	-2.4
3,971,735	-		Sama_3343	0.82	-0.2
3,971,735	-		Sama_3343	0.82	+0.6
3,971,735	-		Sama_3343	0.82	-2.0
3,971,737	+		Sama_3343	0.83	+1.2
3,971,738	-		Sama_3343	0.83	-1.4
3,971,773	+		Sama_3343	0.89	+0.1
3,971,773	+		Sama_3343	0.89	-0.4
3,971,773	+		Sama_3343	0.89	+0.5
3,971,773	+		Sama_3343	0.89	-0.3
3,971,773	+		Sama_3343	0.89	+0.8
3,971,773	+		Sama_3343	0.89	-0.4
3,971,774	-		Sama_3343	0.90	-0.9
3,971,774	-		Sama_3343	0.90	-1.4
3,971,774	-		Sama_3343	0.90	-0.5
3,971,774	-		Sama_3343	0.90	+0.2
3,971,774	-		Sama_3343	0.90	+0.4
3,971,774	-		Sama_3343	0.90	-0.1
3,971,774	-		Sama_3343	0.90	-0.3
3,971,774	-		Sama_3343	0.90	+0.1
3,971,774	-		Sama_3343	0.90	+0.3
3,971,774	-		Sama_3343	0.90	-0.0
3,971,774	-		Sama_3343	0.90	+1.6
3,971,774	-		Sama_3343	0.90	-1.0
3,971,774	-		Sama_3343	0.90	+0.3
3,971,775	+		Sama_3343	0.90	-1.0
3,971,775	+		Sama_3343	0.90	-1.9
3,971,807	+				+1.3
3,971,856	+				+0.6
3,971,856	+				+0.1
3,971,857	-				-0.1
3,971,868	+				-3.0
3,971,868	+				-0.5
3,971,868	+				+0.3
3,971,868	+				+1.5
3,971,869	-				-1.5
3,971,904	+		Sama_3344	0.11	+0.0
3,971,904	+		Sama_3344	0.11	+0.1
3,971,991	+		Sama_3344	0.28	+0.6
3,971,992	-		Sama_3344	0.28	-0.3
3,971,992	-		Sama_3344	0.28	-0.3
3,972,021	+		Sama_3344	0.34	+0.9
3,972,047	+		Sama_3344	0.39	-0.8
3,972,048	-		Sama_3344	0.40	-0.8
3,972,056	-		Sama_3344	0.41	-0.9
3,972,056	-		Sama_3344	0.41	-0.5
3,972,067	+		Sama_3344	0.43	+2.1
3,972,067	+		Sama_3344	0.43	-1.0
3,972,068	-		Sama_3344	0.44	+0.1
3,972,145	+		Sama_3344	0.59	-1.0
3,972,145	+		Sama_3344	0.59	+0.4
3,972,145	+		Sama_3344	0.59	-0.6
3,972,145	+		Sama_3344	0.59	-0.1
3,972,145	+		Sama_3344	0.59	+0.2
3,972,145	+		Sama_3344	0.59	-1.8
3,972,145	+		Sama_3344	0.59	+1.3
3,972,145	+		Sama_3344	0.59	-0.4
3,972,145	+		Sama_3344	0.59	+1.4
3,972,146	-		Sama_3344	0.59	+0.8
3,972,146	-		Sama_3344	0.59	-1.0
3,972,146	-		Sama_3344	0.59	-0.4
3,972,146	-		Sama_3344	0.59	-0.4
3,972,146	-		Sama_3344	0.59	-0.4
3,972,146	-		Sama_3344	0.59	+0.1
3,972,146	-		Sama_3344	0.59	-0.6
3,972,146	-		Sama_3344	0.59	-0.9
3,972,147	+		Sama_3344	0.59	+0.9
3,972,147	+		Sama_3344	0.59	+0.7
3,972,147	+		Sama_3344	0.59	-2.0
3,972,147	+		Sama_3344	0.59	+0.3
3,972,147	+		Sama_3344	0.59	-0.2
3,972,148	-		Sama_3344	0.59	-0.2
3,972,148	-		Sama_3344	0.59	+1.5
3,972,148	-		Sama_3344	0.59	-2.3
3,972,148	-		Sama_3344	0.59	+0.7
3,972,148	-		Sama_3344	0.59	+0.0
3,972,148	-		Sama_3344	0.59	+0.6
3,972,149	+		Sama_3344	0.60	-0.1
3,972,149	+		Sama_3344	0.60	-0.4
3,972,149	+		Sama_3344	0.60	-0.4
3,972,149	+		Sama_3344	0.60	+0.9
3,972,149	+		Sama_3344	0.60	-0.5
3,972,149	+		Sama_3344	0.60	+0.7
3,972,150	-		Sama_3344	0.60	+1.5
3,972,150	-		Sama_3344	0.60	-1.9
3,972,183	+		Sama_3344	0.66	-1.5
3,972,183	+		Sama_3344	0.66	+0.3
3,972,183	+		Sama_3344	0.66	-0.7
3,972,184	-		Sama_3344	0.67	+0.9
3,972,184	-		Sama_3344	0.67	-0.3
3,972,196	+		Sama_3344	0.69	-0.2
3,972,196	+		Sama_3344	0.69	-1.2
3,972,201	+		Sama_3344	0.70	+1.4
3,972,201	+		Sama_3344	0.70	+0.3
3,972,201	+		Sama_3344	0.70	+1.1
3,972,201	+		Sama_3344	0.70	-3.3
3,972,202	-		Sama_3344	0.70	+0.3
3,972,202	-		Sama_3344	0.70	+1.1
3,972,202	-		Sama_3344	0.70	+0.2
3,972,211	+		Sama_3344	0.72	-0.4
3,972,285	-		Sama_3344	0.87	-0.3
3,972,285	-		Sama_3344	0.87	-0.5
3,972,337	+				+1.0
3,972,338	-				+0.3
3,972,418	+		Sama_3345	0.22	+0.4
3,972,418	+		Sama_3345	0.22	-1.0
3,972,418	+		Sama_3345	0.22	+0.4
3,972,418	+		Sama_3345	0.22	-0.9
3,972,418	+		Sama_3345	0.22	-0.0
3,972,418	+		Sama_3345	0.22	-0.3
3,972,418	+		Sama_3345	0.22	-0.6
3,972,418	+		Sama_3345	0.22	-1.4
3,972,418	+		Sama_3345	0.22	+0.1
3,972,419	-		Sama_3345	0.23	-0.0
3,972,419	-		Sama_3345	0.23	-0.5
3,972,419	-		Sama_3345	0.23	-0.0
3,972,419	-		Sama_3345	0.23	+0.1
3,972,419	-		Sama_3345	0.23	-0.8
3,972,419	-		Sama_3345	0.23	-0.1
3,972,419	-		Sama_3345	0.23	-0.3
3,972,419	-		Sama_3345	0.23	+1.2
3,972,419	-		Sama_3345	0.23	+0.4
3,972,419	-		Sama_3345	0.23	-1.1
3,972,419	-		Sama_3345	0.23	+0.2
3,972,419	-		Sama_3345	0.23	+0.8
3,972,421	+		Sama_3345	0.23	+1.3
3,972,421	+		Sama_3345	0.23	+0.9
3,972,471	+		Sama_3345	0.40	+1.4
3,972,471	+		Sama_3345	0.40	+0.3
3,972,471	+		Sama_3345	0.40	-0.2
3,972,471	+		Sama_3345	0.40	-0.9
3,972,471	+		Sama_3345	0.40	-0.6
3,972,471	+		Sama_3345	0.40	-0.8
3,972,482	-		Sama_3345	0.44	+1.2
3,972,482	-		Sama_3345	0.44	-1.5
3,972,482	-		Sama_3345	0.44	-0.6
3,972,538	-		Sama_3345	0.62	-0.7
3,972,583	+		Sama_3345	0.77	+1.8
3,972,583	+		Sama_3345	0.77	+0.3
3,972,583	+		Sama_3345	0.77	-0.4
3,972,584	-		Sama_3345	0.77	+3.5
3,972,584	-		Sama_3345	0.77	-1.3
3,972,584	-		Sama_3345	0.77	+0.0
3,972,584	-		Sama_3345	0.77	-0.6
3,972,584	-		Sama_3345	0.77	+0.7
3,972,584	-		Sama_3345	0.77	-0.6
3,972,587	+		Sama_3345	0.78	-1.1
3,972,587	+		Sama_3345	0.78	-1.4
3,972,587	+		Sama_3345	0.78	-0.8
3,972,587	+		Sama_3345	0.78	-0.7
3,972,587	+		Sama_3345	0.78	-0.9
3,972,587	+		Sama_3345	0.78	+0.5
3,972,587	+		Sama_3345	0.78	-1.1
3,972,587	+		Sama_3345	0.78	-0.1
3,972,587	+		Sama_3345	0.78	+0.4
3,972,587	+		Sama_3345	0.78	+1.4
3,972,587	+		Sama_3345	0.78	+1.3
3,972,587	+		Sama_3345	0.78	-0.1
3,972,587	+		Sama_3345	0.78	+2.5
3,972,587	+		Sama_3345	0.78	-0.1
3,972,587	+		Sama_3345	0.78	-0.6
3,972,587	+		Sama_3345	0.78	+0.2
3,972,587	+		Sama_3345	0.78	+1.4
3,972,587	+		Sama_3345	0.78	+0.9
3,972,587	+		Sama_3345	0.78	+0.2
3,972,587	+		Sama_3345	0.78	-0.1
3,972,587	+		Sama_3345	0.78	+1.0
3,972,588	-		Sama_3345	0.79	-1.9
3,972,588	-		Sama_3345	0.79	-0.3
3,972,588	-		Sama_3345	0.79	+0.1
3,972,588	-		Sama_3345	0.79	-0.8
3,972,588	-		Sama_3345	0.79	-2.2
3,972,588	-		Sama_3345	0.79	-0.9
3,972,588	-		Sama_3345	0.79	+0.5
3,972,588	-		Sama_3345	0.79	+0.7
3,972,588	-		Sama_3345	0.79	-1.3
3,972,588	-		Sama_3345	0.79	-0.1
3,972,588	-		Sama_3345	0.79	+0.1
3,972,588	-		Sama_3345	0.79	+1.0
3,972,588	-		Sama_3345	0.79	+0.1
3,972,588	-		Sama_3345	0.79	-0.9
3,972,588	-		Sama_3345	0.79	+1.9
3,972,588	-		Sama_3345	0.79	+0.2
3,972,588	-		Sama_3345	0.79	-0.0
3,972,588	-		Sama_3345	0.79	+1.8
3,972,588	-		Sama_3345	0.79	-0.1
3,972,588	-		Sama_3345	0.79	+0.6
3,972,588	-		Sama_3345	0.79	-1.8
3,972,588	-		Sama_3345	0.79	+1.6
3,972,588	-		Sama_3345	0.79	-0.7
3,972,588	-		Sama_3345	0.79	+1.8
3,972,588	-		Sama_3345	0.79	-0.2
3,972,588	-		Sama_3345	0.79	-0.9
3,972,588	-		Sama_3345	0.79	-1.0
3,972,650	+				+0.6
3,972,650	+				-0.8
3,972,664	+				-1.6
3,972,664	+				+0.0
3,972,665	-				-0.9
3,972,665	-				+1.9
3,972,698	-				+1.3
3,972,708	+				+1.3
3,972,708	+				-0.1
3,972,708	+				+0.6
3,972,708	+				+1.7
3,972,709	-				-1.5
3,972,709	-				-0.6
3,972,709	-				-1.5
3,972,709	-				+0.3
3,972,709	-				+0.0
3,972,709	-				-0.7
3,972,803	+				+0.3
3,972,803	+				+0.6
3,972,803	+				+1.2
3,972,804	-				-0.4
3,972,804	-				+1.3
3,972,804	-				+0.4