Strain Fitness in Shewanella amazonensis SB2B around Sama_3030

Experiment: L-Threonine (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Threonine (N)
3,604,233	-				-0.8
3,604,235	+				+1.9
3,604,241	-				-0.2
3,604,241	-				+0.0
3,604,262	-				-0.6
3,604,719	-				+0.1
3,604,719	-				-0.8
3,604,758	-				-1.6
3,604,758	-				-1.1
3,604,758	-				+0.0
3,604,760	-				-0.4
3,604,760	-				-1.6
3,604,773	-				-2.1
3,604,778	-				+0.8
3,604,786	-				+0.2
3,604,804	-				-1.7
3,604,804	-				-1.1
3,604,926	+		Sama_3030	0.10	+0.1
3,604,940	-		Sama_3030	0.11	-0.9
3,604,940	-		Sama_3030	0.11	+0.8
3,604,940	-		Sama_3030	0.11	-0.1
3,604,941	+		Sama_3030	0.11	+0.3
3,604,942	-		Sama_3030	0.11	+0.1
3,604,942	-		Sama_3030	0.11	-0.1
3,604,948	+		Sama_3030	0.12	+1.8
3,604,948	+		Sama_3030	0.12	-1.9
3,604,948	+		Sama_3030	0.12	-0.5
3,604,949	-		Sama_3030	0.12	-0.3
3,604,949	-		Sama_3030	0.12	+1.5
3,605,011	-		Sama_3030	0.16	+0.1
3,605,011	-		Sama_3030	0.16	-2.0
3,605,021	+		Sama_3030	0.17	-1.2
3,605,021	+		Sama_3030	0.17	+0.6
3,605,021	+		Sama_3030	0.17	+1.6
3,605,022	-		Sama_3030	0.17	-0.7
3,605,025	+		Sama_3030	0.17	+2.2
3,605,025	+		Sama_3030	0.17	+1.1
3,605,025	+		Sama_3030	0.17	-0.4
3,605,025	+		Sama_3030	0.17	+1.4
3,605,025	+		Sama_3030	0.17	+0.3
3,605,025	+		Sama_3030	0.17	+2.5
3,605,025	+		Sama_3030	0.17	-0.6
3,605,025	+		Sama_3030	0.17	+0.9
3,605,026	-		Sama_3030	0.17	+0.6
3,605,026	-		Sama_3030	0.17	+0.2
3,605,026	-		Sama_3030	0.17	+0.2
3,605,026	-		Sama_3030	0.17	-0.2
3,605,026	-		Sama_3030	0.17	+1.1
3,605,026	-		Sama_3030	0.17	-0.9
3,605,026	-		Sama_3030	0.17	+1.1
3,605,026	-		Sama_3030	0.17	+1.8
3,605,026	-		Sama_3030	0.17	-0.1
3,605,031	+		Sama_3030	0.17	+2.3
3,605,031	+		Sama_3030	0.17	+1.5
3,605,031	+		Sama_3030	0.17	-0.9
3,605,031	+		Sama_3030	0.17	+0.4
3,605,032	-		Sama_3030	0.18	-1.4
3,605,032	-		Sama_3030	0.18	+0.1
3,605,032	-		Sama_3030	0.18	+0.2
3,605,032	-		Sama_3030	0.18	+0.4
3,605,032	-		Sama_3030	0.18	-0.3
3,605,032	-		Sama_3030	0.18	-0.9
3,605,074	+		Sama_3030	0.20	+1.1
3,605,074	+		Sama_3030	0.20	-0.3
3,605,075	-		Sama_3030	0.20	+0.3
3,605,075	-		Sama_3030	0.20	-0.3
3,605,075	-		Sama_3030	0.20	-0.3
3,605,107	+		Sama_3030	0.23	+0.3
3,605,107	+		Sama_3030	0.23	+1.7
3,605,198	-		Sama_3030	0.29	+0.0
3,605,236	-		Sama_3030	0.31	+0.3
3,605,258	+		Sama_3030	0.33	-0.4
3,605,258	+		Sama_3030	0.33	-0.8
3,605,259	-		Sama_3030	0.33	+1.5
3,605,259	-		Sama_3030	0.33	-0.7
3,605,259	-		Sama_3030	0.33	-0.5
3,605,265	+		Sama_3030	0.33	-1.2
3,605,265	+		Sama_3030	0.33	-0.8
3,605,265	+		Sama_3030	0.33	-1.3
3,605,265	+		Sama_3030	0.33	-1.1
3,605,265	+		Sama_3030	0.33	-0.5
3,605,265	+		Sama_3030	0.33	+0.4
3,605,265	+		Sama_3030	0.33	-2.8
3,605,265	+		Sama_3030	0.33	-1.5
3,605,265	+		Sama_3030	0.33	-0.1
3,605,265	+		Sama_3030	0.33	-1.4
3,605,265	+		Sama_3030	0.33	+0.1
3,605,265	+		Sama_3030	0.33	+1.5
3,605,266	-		Sama_3030	0.33	+1.9
3,605,266	-		Sama_3030	0.33	-0.2
3,605,266	-		Sama_3030	0.33	-0.3
3,605,266	-		Sama_3030	0.33	+0.6
3,605,266	-		Sama_3030	0.33	+0.9
3,605,266	-		Sama_3030	0.33	+0.1
3,605,266	-		Sama_3030	0.33	+0.1
3,605,266	-		Sama_3030	0.33	-1.2
3,605,266	-		Sama_3030	0.33	+0.5
3,605,266	-		Sama_3030	0.33	-0.2
3,605,266	-		Sama_3030	0.33	+0.1
3,605,266	-		Sama_3030	0.33	+0.7
3,605,266	-		Sama_3030	0.33	+0.3
3,605,266	-		Sama_3030	0.33	-1.2
3,605,266	-		Sama_3030	0.33	+0.4
3,605,268	-		Sama_3030	0.33	-0.4
3,605,268	-		Sama_3030	0.33	+1.1
3,605,333	+		Sama_3030	0.38	+0.9
3,605,333	+		Sama_3030	0.38	+2.5
3,605,333	+		Sama_3030	0.38	-0.1
3,605,333	+		Sama_3030	0.38	-0.8
3,605,333	+		Sama_3030	0.38	-1.7
3,605,333	+		Sama_3030	0.38	-0.3
3,605,333	+		Sama_3030	0.38	-0.4
3,605,333	+		Sama_3030	0.38	+1.5
3,605,333	+		Sama_3030	0.38	+1.1
3,605,333	+		Sama_3030	0.38	-2.1
3,605,333	+		Sama_3030	0.38	+0.9
3,605,333	+		Sama_3030	0.38	+1.7
3,605,334	-		Sama_3030	0.38	-0.7
3,605,334	-		Sama_3030	0.38	+0.2
3,605,334	-		Sama_3030	0.38	-1.2
3,605,334	-		Sama_3030	0.38	+1.8
3,605,334	-		Sama_3030	0.38	+1.1
3,605,334	-		Sama_3030	0.38	-0.7
3,605,334	-		Sama_3030	0.38	-0.5
3,605,334	-		Sama_3030	0.38	-0.4
3,605,492	+		Sama_3030	0.48	-0.2
3,605,492	+		Sama_3030	0.48	+0.8
3,605,492	+		Sama_3030	0.48	-0.5
3,605,492	+		Sama_3030	0.48	+0.8
3,605,492	+		Sama_3030	0.48	-1.3
3,605,492	+		Sama_3030	0.48	+0.4
3,605,492	+		Sama_3030	0.48	+0.9
3,605,492	+		Sama_3030	0.48	-0.2
3,605,492	+		Sama_3030	0.48	+0.2
3,605,492	+		Sama_3030	0.48	-1.3
3,605,492	+		Sama_3030	0.48	-0.5
3,605,492	+		Sama_3030	0.48	-0.9
3,605,493	-		Sama_3030	0.48	-0.6
3,605,493	-		Sama_3030	0.48	+1.0
3,605,493	-		Sama_3030	0.48	-0.1
3,605,493	-		Sama_3030	0.48	-1.0
3,605,493	-		Sama_3030	0.48	+1.2
3,605,493	-		Sama_3030	0.48	+0.5
3,605,493	-		Sama_3030	0.48	-0.8
3,605,493	-		Sama_3030	0.48	-0.0
3,605,493	-		Sama_3030	0.48	-0.3
3,605,493	-		Sama_3030	0.48	+0.3
3,605,493	-		Sama_3030	0.48	+0.3
3,605,493	-		Sama_3030	0.48	+0.9
3,605,493	-		Sama_3030	0.48	+1.5
3,605,493	-		Sama_3030	0.48	-0.2
3,605,493	-		Sama_3030	0.48	+0.5
3,605,512	-		Sama_3030	0.50	+1.4
3,605,574	-		Sama_3030	0.54	+1.2
3,605,574	-		Sama_3030	0.54	+1.8
3,605,626	-		Sama_3030	0.57	+1.7
3,605,679	+		Sama_3030	0.61	-0.7
3,605,679	+		Sama_3030	0.61	-0.5
3,605,680	-		Sama_3030	0.61	+0.0
3,605,680	-		Sama_3030	0.61	-0.3
3,605,680	-		Sama_3030	0.61	+0.4
3,605,778	+		Sama_3030	0.68	+0.2
3,605,778	+		Sama_3030	0.68	+1.2
3,605,779	-		Sama_3030	0.68	-0.1
3,605,916	+		Sama_3030	0.77	-0.5
3,605,917	-		Sama_3030	0.77	+0.6
3,605,969	+		Sama_3030	0.80	-0.0
3,605,969	+		Sama_3030	0.80	+1.3
3,605,969	+		Sama_3030	0.80	-0.6
3,605,969	+		Sama_3030	0.80	+0.9
3,605,970	-		Sama_3030	0.80	+0.5
3,605,970	-		Sama_3030	0.80	-0.0
3,605,970	-		Sama_3030	0.80	-1.3
3,605,970	-		Sama_3030	0.80	-0.3
3,606,063	+		Sama_3030	0.87	+0.6
3,606,099	+		Sama_3030	0.89	-1.1
3,606,099	+		Sama_3030	0.89	-0.7
3,606,099	+		Sama_3030	0.89	-0.4
3,606,100	-		Sama_3030	0.89	-0.2
3,606,100	-		Sama_3030	0.89	+0.3
3,606,100	-		Sama_3030	0.89	-1.0
3,606,100	-		Sama_3030	0.89	+0.3
3,606,119	-				-0.2
3,606,119	-				-0.8
3,606,129	+				+0.5
3,606,129	+				-0.5
3,606,161	+				-1.5
3,606,168	+				+1.1
3,606,169	-				+0.1
3,606,169	-				-0.6
3,606,169	-				+1.5
3,606,224	+				+0.8
3,606,224	+				-0.4
3,606,224	+				+0.6
3,606,224	+				-2.5
3,606,225	-				-1.1
3,606,261	+				+0.7
3,606,261	+				-0.6
3,606,261	+				+1.0
3,606,262	-				-1.7
3,606,262	-				-1.3
3,606,262	-				+0.8
3,606,297	+				+0.5
3,606,297	+				+1.6
3,606,297	+				+0.0
3,606,298	-				-0.2
3,606,298	-				+0.8
3,606,298	-				+1.2
3,606,298	-				-0.6
3,606,298	-				-1.0
3,606,308	-				-0.7
3,606,308	-				-0.7
3,606,308	-				-2.0
3,606,331	+				+0.3
3,606,332	-				-0.3
3,606,332	-				+2.3
3,606,332	-				+0.2
3,606,332	-				-1.6
3,606,333	+				+0.4
3,606,333	+				-1.1
3,606,334	-				-0.4
3,606,334	-				+0.4
3,606,334	-				-1.8
3,606,339	+				+0.2
3,606,339	+				-0.5
3,606,339	+				+0.7
3,606,339	+				+0.6
3,606,339	+				-0.4
3,606,339	+				+0.5
3,606,339	+				+1.5
3,606,339	+				-0.8
3,606,339	+				-0.6
3,606,340	-				-1.2
3,606,340	-				+0.4
3,606,340	-				-0.1
3,606,340	-				+0.8
3,606,340	-				+0.8
3,606,340	-				+1.7
3,606,365	+				-0.8
3,606,365	+				+0.8
3,606,381	+				+1.0
3,606,382	-				-0.2
3,606,387	+				-1.9
3,606,387	+				-0.5
3,606,387	+				+1.8
3,606,387	+				+0.5
3,606,387	+				-1.0
3,606,388	-				-0.8
3,606,388	-				-0.9
3,606,388	-				-0.2
3,606,388	-				-1.7
3,606,388	-				+0.1
3,606,388	-				+1.3
3,606,388	-				-0.6
3,606,388	-				-0.9
3,606,441	-				+0.2
3,606,441	-				-0.6
3,606,455	+				-0.4
3,606,455	+				+0.6
3,606,455	+				+0.3
3,606,455	+				+0.3
3,606,456	-				-1.9
3,606,456	-				-0.2
3,606,456	-				-1.8
3,606,524	+				-0.3
3,606,526	+				+1.0
3,606,526	+				-1.4
3,606,526	+				+0.7
3,606,526	+				+1.1
3,606,526	+				+0.9
3,606,526	+				+0.5
3,606,526	+				+0.5
3,606,526	+				+0.4
3,606,526	+				-1.1
3,606,526	+				+2.2
3,606,526	+				+0.0
3,606,526	+				-0.3
3,606,526	+				-1.6
3,606,526	+				-0.8
3,606,526	+				-0.1
3,606,526	+				-1.7
3,606,526	+				-2.3
3,606,526	+				+0.4
3,606,526	+				-0.5
3,606,526	+				-0.6
3,606,526	+				+1.6
3,606,526	+				-0.7
3,606,526	+				-0.6
3,606,526	+				-0.4
3,606,527	-				+0.7
3,606,527	-				-0.3
3,606,527	-				-1.8
3,606,527	-				+0.6
3,606,527	-				-1.0
3,606,527	-				-0.7
3,606,527	-				+0.8
3,606,527	-				-0.5
3,606,527	-				+0.6
3,606,527	-				+1.1
3,606,527	-				-0.9
3,606,527	-				+1.1
3,606,527	-				-0.2
3,606,527	-				-0.7
3,606,527	-				+0.3
3,606,527	-				+0.2
3,606,527	-				-0.3
3,606,528	+				-2.4
3,606,528	+				+0.3
3,606,528	+				-1.5
3,606,528	+				-0.7
3,606,528	+				-1.4
3,606,528	+				+0.6
3,606,528	+				+0.9
3,606,528	+				-0.5
3,606,528	+				-0.5
3,606,528	+				+0.8
3,606,528	+				-0.3
3,606,528	+				+0.1
3,606,528	+				-0.8
3,606,528	+				-0.9
3,606,528	+				-0.9
3,606,528	+				+0.6
3,606,529	-				-0.1
3,606,529	-				+1.4
3,606,529	-				+0.9
3,606,529	-				-0.8
3,606,529	-				-0.5
3,606,529	-				-1.7
3,606,529	-				+1.3
3,606,529	-				-0.9
3,606,529	-				-0.7
3,606,529	-				-2.6
3,606,529	-				+0.5
3,606,529	-				-1.7
3,606,529	-				-1.4
3,606,529	-				+0.9
3,606,529	-				+0.5
3,606,529	-				+0.8
3,606,529	-				+1.0
3,606,529	-				-1.4
3,606,529	-				-0.3
3,606,529	-				+1.5
3,606,529	-				+0.7
3,606,529	-				-0.2
3,606,529	-				-0.2
3,606,529	-				-1.0
3,606,529	-				-1.5
3,606,529	-				+0.1
3,606,555	+				-1.0
3,606,555	+				-0.3
3,606,555	+				+1.2
3,606,556	-				-0.6
3,606,561	+				-0.4
3,606,567	+				+1.0
3,606,575	-				-0.6
3,606,597	+				+0.6
3,606,597	+				+0.6
3,606,612	+				-1.2
3,606,662	-				-2.0
3,606,682	-				-0.5
3,606,682	-				-1.6
3,606,682	-				-0.5
3,606,682	-				+0.2
3,606,698	-				-0.6
3,606,714	+				+0.4
3,606,714	+				-1.7
3,606,714	+				-0.9
3,606,714	+				-0.2
3,606,714	+				+1.2
3,606,715	-				+0.0
3,606,715	-				-1.1
3,606,715	-				+1.0
3,606,715	-				-1.4
3,606,715	-				+0.1
3,606,715	-				+0.9
3,606,715	-				+0.8
3,606,715	-				-0.7
3,606,715	-				+0.3
3,606,718	+				-0.4
3,606,718	+				+0.9
3,606,719	-				-1.3
3,606,719	-				+0.1
3,606,719	-				-0.7
3,606,719	-				+0.9
3,606,719	-				-0.2
3,606,719	-				+0.2
3,606,719	-				-1.0
3,606,736	+				-1.1
3,606,736	+				-0.3
3,606,737	-				+0.7
3,606,737	-				-0.2
3,606,913	+		Sama_3031	0.44	+1.5
3,606,914	-		Sama_3031	0.44	+0.0
3,606,958	+		Sama_3031	0.54	-1.5
3,606,968	-		Sama_3031	0.56	-1.3
3,606,999	+		Sama_3031	0.63	+0.2
3,606,999	+		Sama_3031	0.63	-1.3
3,607,000	-		Sama_3031	0.63	+0.3
3,607,000	-		Sama_3031	0.63	+1.5
3,607,000	-		Sama_3031	0.63	+0.7
3,607,000	-		Sama_3031	0.63	+0.4
3,607,000	-		Sama_3031	0.63	+0.3
3,607,000	-		Sama_3031	0.63	+0.2
3,607,000	-		Sama_3031	0.63	+1.8
3,607,021	+		Sama_3031	0.68	-0.3
3,607,022	-		Sama_3031	0.68	-0.1
3,607,099	-		Sama_3031	0.85	+0.8
3,607,099	-		Sama_3031	0.85	-0.9
3,607,135	-				-0.7
3,607,163	-				+0.1
3,607,168	+				+1.9
3,607,168	+				+0.6
3,607,169	-				-1.7
3,607,199	-				-0.9
3,607,199	-				-0.3
3,607,229	+				+0.1
3,607,230	-				-0.7
3,607,242	-				+0.1
3,607,242	-				-1.2
3,607,253	-				+0.0