Strain Fitness in Shewanella amazonensis SB2B around Sama_2923

Experiment: L-Threonine (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Threonine (N)
3,476,636	+		Sama_2922	0.85	+0.5
3,476,637	-		Sama_2922	0.85	-1.1
3,476,651	+		Sama_2922	0.86	+0.5
3,476,651	+		Sama_2922	0.86	+0.4
3,476,652	-		Sama_2922	0.86	-1.4
3,476,655	-		Sama_2922	0.86	-0.5
3,476,655	-		Sama_2922	0.86	+0.7
3,476,691	+		Sama_2922	0.88	+2.4
3,476,691	+		Sama_2922	0.88	+0.8
3,476,692	-		Sama_2922	0.88	+1.2
3,476,733	+		Sama_2922	0.90	+1.5
3,476,733	+		Sama_2922	0.90	-0.2
3,476,734	-		Sama_2922	0.90	+0.3
3,476,782	-				-1.1
3,476,784	-				+0.3
3,476,784	-				-0.1
3,476,817	+				-0.4
3,476,868	+				-0.5
3,476,869	-				-0.5
3,476,869	-				+0.3
3,476,895	+				+2.4
3,476,896	-				-0.2
3,476,896	-				-0.1
3,476,898	+				+0.5
3,476,898	+				-1.4
3,476,899	-				-1.9
3,476,899	-				-1.9
3,476,924	+				-0.4
3,476,925	-				+2.1
3,476,925	-				+1.0
3,476,925	-				-1.0
3,476,928	-				+0.2
3,476,928	-				-1.3
3,476,939	+				+0.1
3,476,940	-				-0.5
3,476,944	+				-1.2
3,476,944	+				-0.1
3,476,944	+				-0.5
3,476,945	-				+0.1
3,476,945	-				-0.8
3,476,945	-				-0.5
3,476,956	+				-1.8
3,476,957	-				+1.3
3,476,960	+				-0.2
3,476,960	+				+0.6
3,476,961	-				+1.1
3,476,961	-				-1.4
3,476,975	-				-0.4
3,476,984	+				-0.3
3,476,994	+				+1.2
3,476,995	-				-0.3
3,477,017	+				+0.7
3,477,018	-				-0.5
3,477,018	-				-0.3
3,477,018	-				+0.1
3,477,026	+				-0.3
3,477,026	+				-0.5
3,477,027	-				-0.8
3,477,029	-				-0.5
3,477,029	-				+0.4
3,477,045	+				+0.4
3,477,053	+				-0.6
3,477,054	-				+1.1
3,477,063	-				-2.2
3,477,120	-				-0.3
3,477,120	-				-0.4
3,477,162	+				+2.6
3,477,217	-				+0.9
3,477,248	+				-0.5
3,477,248	+				-2.0
3,477,248	+				+0.8
3,477,248	+				-0.1
3,477,248	+				+0.2
3,477,248	+				+0.6
3,477,248	+				+0.2
3,477,248	+				+1.9
3,477,249	-				-0.5
3,477,249	-				+0.4
3,477,249	-				-1.2
3,477,249	-				+1.8
3,477,249	-				-0.4
3,477,249	-				-0.5
3,477,249	-				-1.6
3,477,249	-				-0.5
3,477,249	-				+1.9
3,477,292	-				-3.0
3,477,331	+				-2.0
3,477,331	+				-1.2
3,477,332	-				-1.0
3,477,332	-				+0.9
3,477,461	+				+0.3
3,477,461	+				-0.8
3,477,461	+				-1.2
3,477,526	+				+2.1
3,477,549	-				-2.5
3,477,549	-				-0.1
3,477,575	+				+0.7
3,477,575	+				-0.7
3,477,576	-				+0.2
3,477,576	-				-0.8
3,477,576	-				+0.3
3,477,576	-				-0.1
3,477,576	-				+0.3
3,477,588	+				+0.2
3,477,588	+				+0.4
3,477,589	-				-0.0
3,477,605	+				-0.4
3,477,616	+				-0.8
3,477,616	+				-0.5
3,477,618	+				-2.4
3,477,618	+				-0.2
3,477,618	+				+0.3
3,477,618	+				+0.9
3,477,618	+				-0.4
3,477,619	-				-2.4
3,477,619	-				-0.6
3,477,619	-				+0.6
3,477,619	-				-1.5
3,477,627	+				+1.3
3,477,627	+				-0.3
3,477,628	-				-0.9
3,477,628	-				-1.3
3,477,628	-				-1.0
3,477,628	-				+0.5
3,477,631	+				-1.2
3,477,675	-				-1.2
3,477,675	-				-1.5
3,477,741	+		Sama_2923	0.20	+0.7
3,477,741	+		Sama_2923	0.20	+1.3
3,477,741	+		Sama_2923	0.20	-2.0
3,477,741	+		Sama_2923	0.20	-0.5
3,477,741	+		Sama_2923	0.20	-1.8
3,477,742	-		Sama_2923	0.20	-1.4
3,477,742	-		Sama_2923	0.20	+0.0
3,477,742	-		Sama_2923	0.20	-1.0
3,477,742	-		Sama_2923	0.20	+0.9
3,477,742	-		Sama_2923	0.20	+0.6
3,477,744	+		Sama_2923	0.21	+0.3
3,477,745	-		Sama_2923	0.21	+0.2
3,477,745	-		Sama_2923	0.21	-1.8
3,477,755	+		Sama_2923	0.23	-0.2
3,477,783	+		Sama_2923	0.28	-0.6
3,477,783	+		Sama_2923	0.28	-0.6
3,477,783	+		Sama_2923	0.28	-0.1
3,477,783	+		Sama_2923	0.28	-1.7
3,477,783	+		Sama_2923	0.28	-0.8
3,477,783	+		Sama_2923	0.28	+0.2
3,477,783	+		Sama_2923	0.28	-0.6
3,477,784	-		Sama_2923	0.28	-1.2
3,477,784	-		Sama_2923	0.28	-1.2
3,477,784	-		Sama_2923	0.28	-0.1
3,477,784	-		Sama_2923	0.28	+1.7
3,477,784	-		Sama_2923	0.28	-1.1
3,477,786	+		Sama_2923	0.28	-1.0
3,477,786	+		Sama_2923	0.28	-0.8
3,477,786	+		Sama_2923	0.28	+1.7
3,477,787	-		Sama_2923	0.28	+0.5
3,477,787	-		Sama_2923	0.28	-1.2
3,477,799	+		Sama_2923	0.31	+0.2
3,477,881	+		Sama_2923	0.45	+0.3
3,477,881	+		Sama_2923	0.45	-0.3
3,477,881	+		Sama_2923	0.45	+0.5
3,477,881	+		Sama_2923	0.45	+0.5
3,477,881	+		Sama_2923	0.45	-0.2
3,477,882	-		Sama_2923	0.45	+0.1
3,477,882	-		Sama_2923	0.45	+0.2
3,477,882	-		Sama_2923	0.45	+0.3
3,477,882	-		Sama_2923	0.45	-0.4
3,477,882	-		Sama_2923	0.45	-0.6
3,477,882	-		Sama_2923	0.45	-0.4
3,477,933	+		Sama_2923	0.54	-0.0
3,477,933	+		Sama_2923	0.54	+0.7
3,477,933	+		Sama_2923	0.54	-0.1
3,477,933	+		Sama_2923	0.54	-0.5
3,477,933	+		Sama_2923	0.54	-2.0
3,477,933	+		Sama_2923	0.54	+3.5
3,477,933	+		Sama_2923	0.54	-0.4
3,477,933	+		Sama_2923	0.54	-1.4
3,477,933	+		Sama_2923	0.54	+0.9
3,477,933	+		Sama_2923	0.54	-1.7
3,477,933	+		Sama_2923	0.54	-0.7
3,477,933	+		Sama_2923	0.54	+1.8
3,477,933	+		Sama_2923	0.54	+0.6
3,477,933	+		Sama_2923	0.54	-2.4
3,477,933	+		Sama_2923	0.54	-1.0
3,477,934	-		Sama_2923	0.54	-0.7
3,477,934	-		Sama_2923	0.54	-1.0
3,477,934	-		Sama_2923	0.54	+0.4
3,477,934	-		Sama_2923	0.54	+1.7
3,477,934	-		Sama_2923	0.54	+1.2
3,477,934	-		Sama_2923	0.54	-0.0
3,477,934	-		Sama_2923	0.54	-2.9
3,477,934	-		Sama_2923	0.54	-2.6
3,477,934	-		Sama_2923	0.54	-1.3
3,477,934	-		Sama_2923	0.54	-0.8
3,477,934	-		Sama_2923	0.54	-1.8
3,477,934	-		Sama_2923	0.54	+0.7
3,477,934	-		Sama_2923	0.54	-1.5
3,477,976	+		Sama_2923	0.62	-1.2
3,477,977	-		Sama_2923	0.62	+1.2
3,477,977	-		Sama_2923	0.62	-0.4
3,477,981	-		Sama_2923	0.63	-0.3
3,477,981	-		Sama_2923	0.63	-0.3
3,477,981	-		Sama_2923	0.63	-0.5
3,477,981	-		Sama_2923	0.63	+0.8
3,477,981	-		Sama_2923	0.63	-1.4
3,477,987	+		Sama_2923	0.64	+0.1
3,477,987	+		Sama_2923	0.64	-0.3
3,477,987	+		Sama_2923	0.64	-0.1
3,477,987	+		Sama_2923	0.64	-0.6
3,477,987	+		Sama_2923	0.64	+0.4
3,477,988	-		Sama_2923	0.64	+0.1
3,477,990	+		Sama_2923	0.64	-0.3
3,477,990	+		Sama_2923	0.64	+0.6
3,477,990	+		Sama_2923	0.64	+0.0
3,477,990	+		Sama_2923	0.64	+0.9
3,477,990	+		Sama_2923	0.64	-1.8
3,477,990	+		Sama_2923	0.64	-1.2
3,477,991	-		Sama_2923	0.64	+1.7
3,477,991	-		Sama_2923	0.64	-0.2
3,478,000	+		Sama_2923	0.66	-0.1
3,478,000	+		Sama_2923	0.66	-0.7
3,478,000	+		Sama_2923	0.66	-0.2
3,478,001	-		Sama_2923	0.66	+0.6
3,478,044	+		Sama_2923	0.74	-1.5
3,478,044	+		Sama_2923	0.74	+1.4
3,478,044	+		Sama_2923	0.74	+0.5
3,478,045	-		Sama_2923	0.74	-0.7
3,478,065	-		Sama_2923	0.77	-1.5
3,478,065	-		Sama_2923	0.77	+0.4
3,478,065	-		Sama_2923	0.77	+0.2
3,478,122	+		Sama_2923	0.87	-1.3
3,478,122	+		Sama_2923	0.87	-0.8
3,478,122	+		Sama_2923	0.87	-1.3
3,478,123	-		Sama_2923	0.88	-0.6
3,478,172	-				+0.3
3,478,176	+				+0.4
3,478,176	+				-0.7
3,478,176	+				+1.1
3,478,176	+				-1.2
3,478,176	+				-1.0
3,478,176	+				-0.5
3,478,177	-				-1.2
3,478,177	-				+0.2
3,478,177	-				-1.1
3,478,177	-				+1.1
3,478,177	-				-0.7
3,478,177	-				+0.1
3,478,192	+				+1.2
3,478,192	+				-0.4
3,478,192	+				-0.0
3,478,192	+				+0.4
3,478,193	-				+0.3
3,478,193	-				-0.5
3,478,193	-				-0.3
3,478,193	-				-1.8
3,478,193	-				+1.7
3,478,212	+				-0.2
3,478,212	+				-0.3
3,478,212	+				-1.3
3,478,212	+				-1.6
3,478,213	-				+0.2
3,478,213	-				+0.6
3,478,213	-				+0.5
3,478,213	-				+2.3
3,478,282	+				-1.2
3,478,283	-				+0.2
3,478,316	+				+0.1
3,478,317	-				+0.9
3,478,410	-				+1.4
3,478,410	-				+1.0
3,478,423	+				+1.7
3,478,508	+				+0.2
3,478,509	-				+1.0
3,478,509	-				+0.1
3,478,509	-				-1.1
3,478,550	-				-1.3
3,478,550	-				+0.4
3,478,550	-				-0.1
3,478,554	+				+0.3
3,478,554	+				+0.6
3,478,652	+		Sama_2924	0.14	-0.8
3,478,653	-		Sama_2924	0.14	-1.8
3,478,653	-		Sama_2924	0.14	-0.3
3,478,653	-		Sama_2924	0.14	+1.1
3,478,653	-		Sama_2924	0.14	-0.1
3,478,653	-		Sama_2924	0.14	-0.7
3,478,653	-		Sama_2924	0.14	-1.3
3,478,653	-		Sama_2924	0.14	-1.4
3,478,653	-		Sama_2924	0.14	+0.8
3,478,653	-		Sama_2924	0.14	-1.0
3,478,655	+		Sama_2924	0.14	-1.2
3,478,655	+		Sama_2924	0.14	-0.5
3,478,655	+		Sama_2924	0.14	+1.2
3,478,656	-		Sama_2924	0.14	+0.4
3,478,656	-		Sama_2924	0.14	+1.8
3,478,656	-		Sama_2924	0.14	-0.2
3,478,656	-		Sama_2924	0.14	+0.9
3,478,656	-		Sama_2924	0.14	-0.7
3,478,752	+		Sama_2924	0.19	-1.1
3,478,821	-		Sama_2924	0.23	-1.7
3,478,827	-		Sama_2924	0.24	-0.4
3,478,850	+		Sama_2924	0.25	+0.7
3,478,850	+		Sama_2924	0.25	+1.3
3,478,850	+		Sama_2924	0.25	-1.2
3,478,851	-		Sama_2924	0.25	-0.5
3,478,851	-		Sama_2924	0.25	+0.1
3,478,851	-		Sama_2924	0.25	-0.5
3,478,899	+		Sama_2924	0.28	-1.0
3,478,899	+		Sama_2924	0.28	-2.4
3,478,899	+		Sama_2924	0.28	-1.2
3,478,899	+		Sama_2924	0.28	-2.4
3,478,900	-		Sama_2924	0.28	-1.0
3,478,900	-		Sama_2924	0.28	+0.3
3,478,900	-		Sama_2924	0.28	+0.3
3,478,900	-		Sama_2924	0.28	-0.1
3,478,900	-		Sama_2924	0.28	+0.2
3,478,919	+		Sama_2924	0.29	-1.0
3,478,919	+		Sama_2924	0.29	+1.6
3,478,920	-		Sama_2924	0.29	+0.7
3,478,944	+		Sama_2924	0.30	-0.8
3,479,010	+		Sama_2924	0.34	-0.3
3,479,010	+		Sama_2924	0.34	-0.3
3,479,010	+		Sama_2924	0.34	+0.4
3,479,011	-		Sama_2924	0.34	-0.8
3,479,077	+		Sama_2924	0.38	+1.7
3,479,077	+		Sama_2924	0.38	-1.8