Strain Fitness in Shewanella amazonensis SB2B around Sama_2650

Experiment: L-Threonine (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Threonine (N)
3,175,219	+		Sama_2649	0.52	-1.1
3,175,220	-		Sama_2649	0.52	-0.9
3,175,240	+		Sama_2649	0.54	+2.5
3,175,240	+		Sama_2649	0.54	+0.7
3,175,240	+		Sama_2649	0.54	-0.0
3,175,240	+		Sama_2649	0.54	+0.0
3,175,240	+		Sama_2649	0.54	-2.3
3,175,240	+		Sama_2649	0.54	-0.3
3,175,241	-		Sama_2649	0.54	-0.0
3,175,241	-		Sama_2649	0.54	+2.3
3,175,259	+		Sama_2649	0.55	-0.6
3,175,432	+		Sama_2649	0.68	-0.6
3,175,432	+		Sama_2649	0.68	-0.4
3,175,432	+		Sama_2649	0.68	-1.5
3,175,432	+		Sama_2649	0.68	+1.5
3,175,433	-		Sama_2649	0.68	+0.6
3,175,433	-		Sama_2649	0.68	+0.8
3,175,433	-		Sama_2649	0.68	-2.7
3,175,433	-		Sama_2649	0.68	+1.4
3,175,433	-		Sama_2649	0.68	-1.3
3,175,433	-		Sama_2649	0.68	-1.1
3,175,486	-		Sama_2649	0.72	-2.1
3,175,486	-		Sama_2649	0.72	-0.9
3,175,486	-		Sama_2649	0.72	-0.2
3,175,491	+		Sama_2649	0.73	-0.3
3,175,491	+		Sama_2649	0.73	-1.3
3,175,492	-		Sama_2649	0.73	-0.0
3,175,492	-		Sama_2649	0.73	-1.1
3,175,492	-		Sama_2649	0.73	-1.7
3,175,492	-		Sama_2649	0.73	+0.5
3,175,492	-		Sama_2649	0.73	+1.0
3,175,538	+		Sama_2649	0.76	+0.3
3,175,538	+		Sama_2649	0.76	-0.4
3,175,539	-		Sama_2649	0.76	+1.0
3,175,543	-		Sama_2649	0.77	-1.2
3,175,543	-		Sama_2649	0.77	-1.8
3,175,568	+		Sama_2649	0.78	-0.0
3,175,568	+		Sama_2649	0.78	-1.7
3,175,568	+		Sama_2649	0.78	-0.3
3,175,569	-		Sama_2649	0.79	-0.4
3,175,569	-		Sama_2649	0.79	-0.7
3,175,587	+		Sama_2649	0.80	-0.8
3,175,612	+		Sama_2649	0.82	-1.0
3,175,613	-		Sama_2649	0.82	-1.3
3,175,613	-		Sama_2649	0.82	-1.5
3,175,613	-		Sama_2649	0.82	-0.2
3,175,816	+				+1.1
3,175,816	+				-0.4
3,175,817	-				+0.5
3,175,817	-				-1.9
3,175,817	-				-1.2
3,175,817	-				-1.1
3,175,820	+				+0.2
3,175,820	+				+1.7
3,175,820	+				-0.2
3,175,820	+				+1.1
3,175,821	-				-1.1
3,175,821	-				-2.4
3,175,876	+				+0.9
3,175,876	+				-2.6
3,175,877	-				-0.5
3,175,877	-				-0.4
3,175,877	-				+0.8
3,175,877	-				+1.2
3,175,883	+				+0.2
3,175,893	+				+0.9
3,175,894	-				+0.5
3,175,894	-				+0.4
3,175,894	-				+1.8
3,175,909	+				+0.5
3,175,909	+				+0.4
3,175,910	-				+0.1
3,176,095	+		Sama_2650	0.13	-1.3
3,176,120	+		Sama_2650	0.15	-1.4
3,176,122	-		Sama_2650	0.15	-1.0
3,176,122	-		Sama_2650	0.15	+1.5
3,176,122	-		Sama_2650	0.15	-0.5
3,176,132	-		Sama_2650	0.16	-0.1
3,176,152	+		Sama_2650	0.17	-2.2
3,176,152	+		Sama_2650	0.17	-0.9
3,176,152	+		Sama_2650	0.17	+0.1
3,176,153	-		Sama_2650	0.17	+1.3
3,176,153	-		Sama_2650	0.17	+2.1
3,176,153	-		Sama_2650	0.17	-0.8
3,176,201	-		Sama_2650	0.20	-0.8
3,176,201	-		Sama_2650	0.20	+0.6
3,176,252	-		Sama_2650	0.24	-0.1
3,176,301	+		Sama_2650	0.27	-0.1
3,176,302	-		Sama_2650	0.27	+0.4
3,176,404	+		Sama_2650	0.34	-1.6
3,176,404	+		Sama_2650	0.34	-0.3
3,176,404	+		Sama_2650	0.34	-0.0
3,176,405	-		Sama_2650	0.34	+0.1
3,176,407	+		Sama_2650	0.34	-0.9
3,176,407	+		Sama_2650	0.34	-0.8
3,176,408	-		Sama_2650	0.34	+0.5
3,176,408	-		Sama_2650	0.34	-0.9
3,176,408	-		Sama_2650	0.34	-0.1
3,176,540	-		Sama_2650	0.43	-1.8
3,176,565	+		Sama_2650	0.45	-1.1
3,176,566	-		Sama_2650	0.45	-1.2
3,176,566	-		Sama_2650	0.45	-0.9
3,176,588	+		Sama_2650	0.46	+1.6
3,176,588	+		Sama_2650	0.46	-0.4
3,176,588	+		Sama_2650	0.46	+1.7
3,176,588	+		Sama_2650	0.46	+0.1
3,176,588	+		Sama_2650	0.46	+2.4
3,176,588	+		Sama_2650	0.46	+0.6
3,176,589	-		Sama_2650	0.46	-1.0
3,176,589	-		Sama_2650	0.46	+1.2
3,176,589	-		Sama_2650	0.46	-0.3
3,176,589	-		Sama_2650	0.46	+0.1
3,176,594	+		Sama_2650	0.47	+0.5
3,176,594	+		Sama_2650	0.47	+1.6
3,176,594	+		Sama_2650	0.47	-0.7
3,176,594	+		Sama_2650	0.47	+2.0
3,176,594	+		Sama_2650	0.47	+1.0
3,176,595	-		Sama_2650	0.47	+0.5
3,176,595	-		Sama_2650	0.47	-0.5
3,176,595	-		Sama_2650	0.47	+0.0
3,176,595	-		Sama_2650	0.47	-0.1
3,176,653	+		Sama_2650	0.51	-1.9
3,176,653	+		Sama_2650	0.51	-0.4
3,176,653	+		Sama_2650	0.51	-0.0
3,176,715	-		Sama_2650	0.55	-0.6
3,176,715	-		Sama_2650	0.55	-0.3
3,176,737	+		Sama_2650	0.56	+0.3
3,176,897	+		Sama_2650	0.67	-0.3
3,176,897	+		Sama_2650	0.67	-0.0
3,176,898	-		Sama_2650	0.67	-0.0
3,176,898	-		Sama_2650	0.67	-0.2
3,176,898	-		Sama_2650	0.67	-1.2
3,176,898	-		Sama_2650	0.67	+0.9
3,176,978	+		Sama_2650	0.72	-0.2
3,176,978	+		Sama_2650	0.72	+0.8
3,176,979	-		Sama_2650	0.73	-1.2
3,177,029	+		Sama_2650	0.76	+0.5
3,177,029	+		Sama_2650	0.76	-0.3
3,177,029	+		Sama_2650	0.76	-1.3
3,177,029	+		Sama_2650	0.76	+0.6
3,177,030	-		Sama_2650	0.76	-0.8
3,177,030	-		Sama_2650	0.76	-1.1
3,177,030	-		Sama_2650	0.76	+0.7
3,177,031	+		Sama_2650	0.76	+0.5
3,177,031	+		Sama_2650	0.76	-0.1
3,177,063	+		Sama_2650	0.78	+0.1
3,177,063	+		Sama_2650	0.78	+0.1
3,177,064	-		Sama_2650	0.78	-1.2
3,177,064	-		Sama_2650	0.78	+2.4
3,177,080	+		Sama_2650	0.79	+0.3
3,177,100	+		Sama_2650	0.81	-1.0
3,177,100	+		Sama_2650	0.81	+1.8
3,177,100	+		Sama_2650	0.81	-1.6
3,177,101	-		Sama_2650	0.81	+1.3
3,177,180	+		Sama_2650	0.86	+0.1
3,177,180	+		Sama_2650	0.86	-1.5
3,177,180	+		Sama_2650	0.86	+1.3
3,177,180	+		Sama_2650	0.86	+0.0
3,177,180	+		Sama_2650	0.86	+0.3
3,177,181	-		Sama_2650	0.86	+1.2
3,177,181	-		Sama_2650	0.86	+0.9
3,177,211	+		Sama_2650	0.88	-0.5
3,177,212	-		Sama_2650	0.88	+0.6
3,177,212	-		Sama_2650	0.88	-0.9
3,177,305	+				-0.8
3,177,323	-				-0.1
3,177,323	-				-0.0
3,177,369	+				+0.8
3,177,370	-				+0.2
3,177,370	-				-0.5
3,177,386	+				+2.1
3,177,423	+				-0.2
3,177,424	-				+0.9
3,177,448	+				-1.0
3,177,448	+				+0.1
3,177,448	+				+0.6
3,177,450	+				-3.2
3,177,450	+				+0.9
3,177,451	-				-0.0
3,177,451	-				-0.3
3,177,488	+		Sama_2651	0.16	-0.2
3,177,514	+		Sama_2651	0.23	+0.3
3,177,514	+		Sama_2651	0.23	-0.4
3,177,514	+		Sama_2651	0.23	-0.3
3,177,549	-		Sama_2651	0.33	+0.5
3,177,549	-		Sama_2651	0.33	-1.1
3,177,617	+		Sama_2651	0.52	+0.1
3,177,618	-		Sama_2651	0.52	-1.0
3,177,619	+		Sama_2651	0.52	+0.7
3,177,662	-		Sama_2651	0.64	-1.0
3,177,662	-		Sama_2651	0.64	+1.0
3,177,662	-		Sama_2651	0.64	+0.1
3,177,662	-		Sama_2651	0.64	-0.4
3,177,770	+				-0.2
3,177,770	+				-0.8
3,177,771	-				+0.6
3,177,771	-				+0.1
3,177,771	-				+1.9
3,177,791	+				+1.1
3,177,791	+				-0.1
3,177,798	+				+0.9
3,177,798	+				-1.2
3,177,798	+				+0.1
3,177,841	+				+1.0
3,177,842	-				-0.3
3,177,885	-				+0.3
3,177,911	+				+1.6
3,177,935	-				-0.1
3,178,085	+		Sama_2652	0.25	+1.3
3,178,085	+		Sama_2652	0.25	-0.3
3,178,085	+		Sama_2652	0.25	-0.5
3,178,086	-		Sama_2652	0.25	-1.1
3,178,131	+		Sama_2652	0.31	-1.1
3,178,131	+		Sama_2652	0.31	-0.8
3,178,131	+		Sama_2652	0.31	+0.2
3,178,132	-		Sama_2652	0.32	+0.1
3,178,160	-		Sama_2652	0.35	-0.9
3,178,175	+		Sama_2652	0.37	+1.5
3,178,175	+		Sama_2652	0.37	+0.2
3,178,175	+		Sama_2652	0.37	-0.5
3,178,175	+		Sama_2652	0.37	-0.5
3,178,175	+		Sama_2652	0.37	+0.5
3,178,175	+		Sama_2652	0.37	-2.1
3,178,175	+		Sama_2652	0.37	-1.4
3,178,175	+		Sama_2652	0.37	-0.3
3,178,175	+		Sama_2652	0.37	+0.1
3,178,175	+		Sama_2652	0.37	-0.7
3,178,176	-		Sama_2652	0.38	+0.5
3,178,176	-		Sama_2652	0.38	-0.3
3,178,176	-		Sama_2652	0.38	+0.2
3,178,176	-		Sama_2652	0.38	-0.2
3,178,176	-		Sama_2652	0.38	-1.0
3,178,176	-		Sama_2652	0.38	-0.3
3,178,176	-		Sama_2652	0.38	-0.0
3,178,184	+		Sama_2652	0.39	-0.2
3,178,185	-		Sama_2652	0.39	-1.0
3,178,187	+		Sama_2652	0.39	+0.5
3,178,187	+		Sama_2652	0.39	+0.5
3,178,187	+		Sama_2652	0.39	+0.2
3,178,187	+		Sama_2652	0.39	+1.9
3,178,187	+		Sama_2652	0.39	-0.3
3,178,188	-		Sama_2652	0.39	+0.3
3,178,226	-		Sama_2652	0.44	-2.1
3,178,226	-		Sama_2652	0.44	+0.9
3,178,229	+		Sama_2652	0.45	-2.1
3,178,229	+		Sama_2652	0.45	+1.1
3,178,230	-		Sama_2652	0.45	-0.2
3,178,235	+		Sama_2652	0.46	-0.1
3,178,236	-		Sama_2652	0.46	+0.0
3,178,241	+		Sama_2652	0.47	+1.3
3,178,242	-		Sama_2652	0.47	-2.5
3,178,242	-		Sama_2652	0.47	+2.1
3,178,242	-		Sama_2652	0.47	+0.1
3,178,242	-		Sama_2652	0.47	-0.1
3,178,242	-		Sama_2652	0.47	-0.6
3,178,242	-		Sama_2652	0.47	-1.6
3,178,242	-		Sama_2652	0.47	-0.9
3,178,268	+		Sama_2652	0.50	-1.5
3,178,284	+		Sama_2652	0.52	+0.5
3,178,316	+		Sama_2652	0.57	-2.2
3,178,323	-		Sama_2652	0.58	-0.9
3,178,323	-		Sama_2652	0.58	+0.1
3,178,334	+		Sama_2652	0.59	-0.2
3,178,334	+		Sama_2652	0.59	+1.1
3,178,334	+		Sama_2652	0.59	+0.1
3,178,335	-		Sama_2652	0.59	-1.7
3,178,335	-		Sama_2652	0.59	+0.5
3,178,335	-		Sama_2652	0.59	-1.3
3,178,349	+		Sama_2652	0.61	+1.2
3,178,349	+		Sama_2652	0.61	+2.4
3,178,349	+		Sama_2652	0.61	-0.9
3,178,349	+		Sama_2652	0.61	+0.5
3,178,350	-		Sama_2652	0.61	-0.4
3,178,350	-		Sama_2652	0.61	+0.9
3,178,355	+		Sama_2652	0.62	-0.5
3,178,355	+		Sama_2652	0.62	-0.2
3,178,361	+		Sama_2652	0.63	+1.8
3,178,376	+		Sama_2652	0.65	-0.7
3,178,376	+		Sama_2652	0.65	-0.5
3,178,376	+		Sama_2652	0.65	-0.3
3,178,377	-		Sama_2652	0.65	-0.6
3,178,377	-		Sama_2652	0.65	-0.0
3,178,377	-		Sama_2652	0.65	+0.3
3,178,377	-		Sama_2652	0.65	-0.6