Strain Fitness in Shewanella amazonensis SB2B around Sama_2649

Experiment: L-Threonine (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Threonine (N)
3,173,519	+		Sama_2648	0.59	-0.1
3,173,519	+		Sama_2648	0.59	+3.6
3,173,520	-		Sama_2648	0.59	+0.9
3,173,520	-		Sama_2648	0.59	+0.7
3,173,520	-		Sama_2648	0.59	+1.5
3,173,520	-		Sama_2648	0.59	+0.7
3,173,570	+		Sama_2648	0.63	-0.4
3,173,571	-		Sama_2648	0.63	-0.5
3,173,571	-		Sama_2648	0.63	+0.9
3,173,796	-		Sama_2648	0.78	+2.0
3,173,796	-		Sama_2648	0.78	-0.1
3,173,801	+		Sama_2648	0.78	+0.8
3,173,802	-		Sama_2648	0.78	-0.5
3,173,877	-		Sama_2648	0.83	+0.7
3,173,986	-				+1.8
3,174,043	+				+0.0
3,174,043	+				-0.6
3,174,066	-				+0.3
3,174,122	+				+1.0
3,174,122	+				+0.6
3,174,123	-				+0.4
3,174,139	+				+0.5
3,174,140	-				+0.4
3,174,140	-				+1.1
3,174,140	-				-1.2
3,174,153	-				+0.1
3,174,153	-				-1.3
3,174,153	-				-1.2
3,174,158	+				+1.8
3,174,158	+				+0.6
3,174,276	+				+0.0
3,174,414	-				-0.6
3,174,414	-				-0.0
3,174,414	-				+0.6
3,174,453	-				-0.6
3,174,464	+				+0.5
3,174,465	-				-0.5
3,174,467	+				+1.3
3,174,496	-				+0.3
3,174,506	+				-0.3
3,174,506	+				-0.7
3,174,506	+				-0.8
3,174,507	-				-0.4
3,174,510	+				-0.5
3,174,510	+				+1.5
3,174,510	+				+0.6
3,174,510	+				+0.7
3,174,510	+				-0.7
3,174,510	+				+1.2
3,174,510	+				+0.8
3,174,510	+				+2.5
3,174,510	+				+0.4
3,174,510	+				+1.5
3,174,510	+				-0.3
3,174,511	-				-0.1
3,174,511	-				-1.4
3,174,511	-				-1.2
3,174,511	-				-1.0
3,174,511	-				+1.8
3,174,511	-				-1.2
3,174,511	-				-0.1
3,174,515	+				+0.6
3,174,515	+				-0.2
3,174,515	+				-0.6
3,174,515	+				-0.8
3,174,516	-				-1.9
3,174,516	-				-0.5
3,174,516	-				-0.8
3,174,516	-				-1.1
3,174,516	-				+0.1
3,174,516	-				-2.2
3,174,516	-				+1.9
3,174,516	-				-2.9
3,174,516	-				+0.3
3,174,536	+				-0.0
3,174,536	+				+0.5
3,174,536	+				+1.7
3,174,537	-				-0.5
3,174,568	-				+1.8
3,174,635	+				-0.1
3,174,643	-				-0.5
3,174,668	-		Sama_2649	0.11	-1.2
3,174,698	+		Sama_2649	0.14	+0.9
3,174,699	-		Sama_2649	0.14	-0.4
3,174,699	-		Sama_2649	0.14	+0.7
3,174,762	+		Sama_2649	0.18	+0.5
3,174,762	+		Sama_2649	0.18	-0.8
3,174,826	+		Sama_2649	0.23	+0.1
3,174,826	+		Sama_2649	0.23	+0.6
3,174,826	+		Sama_2649	0.23	-1.1
3,174,827	-		Sama_2649	0.23	-2.5
3,174,827	-		Sama_2649	0.23	-0.5
3,174,827	-		Sama_2649	0.23	-0.2
3,174,857	+		Sama_2649	0.25	-0.9
3,174,857	+		Sama_2649	0.25	+0.2
3,174,858	-		Sama_2649	0.26	+1.5
3,174,858	-		Sama_2649	0.26	-0.7
3,175,219	+		Sama_2649	0.52	-1.1
3,175,220	-		Sama_2649	0.52	-0.9
3,175,240	+		Sama_2649	0.54	+2.5
3,175,240	+		Sama_2649	0.54	+0.7
3,175,240	+		Sama_2649	0.54	-0.0
3,175,240	+		Sama_2649	0.54	+0.0
3,175,240	+		Sama_2649	0.54	-2.3
3,175,240	+		Sama_2649	0.54	-0.3
3,175,241	-		Sama_2649	0.54	-0.0
3,175,241	-		Sama_2649	0.54	+2.3
3,175,259	+		Sama_2649	0.55	-0.6
3,175,432	+		Sama_2649	0.68	-0.6
3,175,432	+		Sama_2649	0.68	-0.4
3,175,432	+		Sama_2649	0.68	-1.5
3,175,432	+		Sama_2649	0.68	+1.5
3,175,433	-		Sama_2649	0.68	+0.6
3,175,433	-		Sama_2649	0.68	+0.8
3,175,433	-		Sama_2649	0.68	-2.7
3,175,433	-		Sama_2649	0.68	+1.4
3,175,433	-		Sama_2649	0.68	-1.3
3,175,433	-		Sama_2649	0.68	-1.1
3,175,486	-		Sama_2649	0.72	-2.1
3,175,486	-		Sama_2649	0.72	-0.9
3,175,486	-		Sama_2649	0.72	-0.2
3,175,491	+		Sama_2649	0.73	-0.3
3,175,491	+		Sama_2649	0.73	-1.3
3,175,492	-		Sama_2649	0.73	-0.0
3,175,492	-		Sama_2649	0.73	-1.1
3,175,492	-		Sama_2649	0.73	-1.7
3,175,492	-		Sama_2649	0.73	+0.5
3,175,492	-		Sama_2649	0.73	+1.0
3,175,538	+		Sama_2649	0.76	+0.3
3,175,538	+		Sama_2649	0.76	-0.4
3,175,539	-		Sama_2649	0.76	+1.0
3,175,543	-		Sama_2649	0.77	-1.2
3,175,543	-		Sama_2649	0.77	-1.8
3,175,568	+		Sama_2649	0.78	-0.0
3,175,568	+		Sama_2649	0.78	-1.7
3,175,568	+		Sama_2649	0.78	-0.3
3,175,569	-		Sama_2649	0.79	-0.4
3,175,569	-		Sama_2649	0.79	-0.7
3,175,587	+		Sama_2649	0.80	-0.8
3,175,612	+		Sama_2649	0.82	-1.0
3,175,613	-		Sama_2649	0.82	-1.3
3,175,613	-		Sama_2649	0.82	-1.5
3,175,613	-		Sama_2649	0.82	-0.2
3,175,816	+				+1.1
3,175,816	+				-0.4
3,175,817	-				+0.5
3,175,817	-				-1.9
3,175,817	-				-1.2
3,175,817	-				-1.1
3,175,820	+				+0.2
3,175,820	+				+1.7
3,175,820	+				-0.2
3,175,820	+				+1.1
3,175,821	-				-1.1
3,175,821	-				-2.4
3,175,876	+				+0.9
3,175,876	+				-2.6
3,175,877	-				-0.5
3,175,877	-				-0.4
3,175,877	-				+0.8
3,175,877	-				+1.2
3,175,883	+				+0.2
3,175,893	+				+0.9
3,175,894	-				+0.5
3,175,894	-				+0.4
3,175,894	-				+1.8
3,175,909	+				+0.5
3,175,909	+				+0.4
3,175,910	-				+0.1
3,176,095	+		Sama_2650	0.13	-1.3
3,176,120	+		Sama_2650	0.15	-1.4
3,176,122	-		Sama_2650	0.15	-1.0
3,176,122	-		Sama_2650	0.15	+1.5
3,176,122	-		Sama_2650	0.15	-0.5
3,176,132	-		Sama_2650	0.16	-0.1
3,176,152	+		Sama_2650	0.17	-2.2
3,176,152	+		Sama_2650	0.17	-0.9
3,176,152	+		Sama_2650	0.17	+0.1
3,176,153	-		Sama_2650	0.17	+1.3
3,176,153	-		Sama_2650	0.17	+2.1
3,176,153	-		Sama_2650	0.17	-0.8
3,176,201	-		Sama_2650	0.20	-0.8
3,176,201	-		Sama_2650	0.20	+0.6
3,176,252	-		Sama_2650	0.24	-0.1
3,176,301	+		Sama_2650	0.27	-0.1
3,176,302	-		Sama_2650	0.27	+0.4
3,176,404	+		Sama_2650	0.34	-1.6
3,176,404	+		Sama_2650	0.34	-0.3
3,176,404	+		Sama_2650	0.34	-0.0
3,176,405	-		Sama_2650	0.34	+0.1
3,176,407	+		Sama_2650	0.34	-0.9
3,176,407	+		Sama_2650	0.34	-0.8
3,176,408	-		Sama_2650	0.34	+0.5
3,176,408	-		Sama_2650	0.34	-0.9
3,176,408	-		Sama_2650	0.34	-0.1
3,176,540	-		Sama_2650	0.43	-1.8
3,176,565	+		Sama_2650	0.45	-1.1
3,176,566	-		Sama_2650	0.45	-1.2
3,176,566	-		Sama_2650	0.45	-0.9
3,176,588	+		Sama_2650	0.46	+1.6
3,176,588	+		Sama_2650	0.46	-0.4
3,176,588	+		Sama_2650	0.46	+1.7
3,176,588	+		Sama_2650	0.46	+0.1
3,176,588	+		Sama_2650	0.46	+2.4
3,176,588	+		Sama_2650	0.46	+0.6
3,176,589	-		Sama_2650	0.46	-1.0
3,176,589	-		Sama_2650	0.46	+1.2
3,176,589	-		Sama_2650	0.46	-0.3
3,176,589	-		Sama_2650	0.46	+0.1
3,176,594	+		Sama_2650	0.47	+0.5
3,176,594	+		Sama_2650	0.47	+1.6
3,176,594	+		Sama_2650	0.47	-0.7
3,176,594	+		Sama_2650	0.47	+2.0
3,176,594	+		Sama_2650	0.47	+1.0
3,176,595	-		Sama_2650	0.47	+0.5
3,176,595	-		Sama_2650	0.47	-0.5
3,176,595	-		Sama_2650	0.47	+0.0
3,176,595	-		Sama_2650	0.47	-0.1
3,176,653	+		Sama_2650	0.51	-1.9
3,176,653	+		Sama_2650	0.51	-0.4
3,176,653	+		Sama_2650	0.51	-0.0
3,176,715	-		Sama_2650	0.55	-0.6
3,176,715	-		Sama_2650	0.55	-0.3
3,176,737	+		Sama_2650	0.56	+0.3