Strain Fitness in Shewanella amazonensis SB2B around Sama_2456

Experiment: L-Threonine (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Threonine (N)
2,963,184	+		Sama_2455	0.63	+0.4
2,963,232	+		Sama_2455	0.68	-1.7
2,963,233	-		Sama_2455	0.68	-2.6
2,963,243	+		Sama_2455	0.69	-0.7
2,963,268	+		Sama_2455	0.71	-0.4
2,963,269	-		Sama_2455	0.71	+0.2
2,963,291	+		Sama_2455	0.73	-2.1
2,963,310	+		Sama_2455	0.74	+0.7
2,963,311	-		Sama_2455	0.74	+1.0
2,963,311	-		Sama_2455	0.74	-0.0
2,963,311	-		Sama_2455	0.74	-1.8
2,963,311	-		Sama_2455	0.74	+0.6
2,963,322	+		Sama_2455	0.75	-0.1
2,963,323	-		Sama_2455	0.76	+0.5
2,963,323	-		Sama_2455	0.76	-0.3
2,963,323	-		Sama_2455	0.76	+2.2
2,963,383	+		Sama_2455	0.81	-1.8
2,963,452	+		Sama_2455	0.87	-0.4
2,963,543	+				-1.4
2,963,543	+				+1.8
2,963,543	+				-0.7
2,963,544	-				+0.1
2,963,544	-				-0.1
2,963,544	-				+3.3
2,963,544	-				+0.7
2,963,544	-				-0.7
2,963,601	+				+1.5
2,963,666	-				-0.3
2,963,666	-				-0.7
2,963,673	+				-0.3
2,963,673	+				+1.0
2,963,673	+				-0.2
2,963,733	+				-1.4
2,963,733	+				-1.2
2,963,733	+				+1.3
2,963,734	-				+1.3
2,963,734	-				+1.5
2,963,736	+				-1.7
2,963,736	+				-2.1
2,963,736	+				+0.5
2,963,736	+				+0.3
2,963,737	-				-0.4
2,963,737	-				+0.5
2,963,759	+				+1.6
2,963,759	+				-0.4
2,963,760	-				+0.3
2,963,834	+				-1.5
2,963,878	-				+2.8
2,963,918	-				+0.7
2,963,956	-				+0.5
2,963,956	-				-0.7
2,963,976	-				-0.5
2,964,003	+				+0.3
2,964,081	+				-2.0
2,964,081	+				-0.0
2,964,081	+				-0.9
2,964,081	+				+0.8
2,964,081	+				+0.5
2,964,082	-				-1.2
2,964,082	-				+0.2
2,964,082	-				-0.8
2,964,082	-				-0.3
2,964,082	-				+0.3
2,964,118	+				+0.9
2,964,118	+				-0.7
2,964,139	+				-1.0
2,964,165	+				+0.5
2,964,166	-				-0.8
2,964,173	+				-1.2
2,964,173	+				-1.1
2,964,173	+				-0.7
2,964,173	+				-0.5
2,964,174	-				-0.1
2,964,174	-				-1.5
2,964,174	-				-0.7
2,964,174	-				+0.5
2,964,174	-				-0.7
2,964,175	+				-2.3
2,964,175	+				-0.4
2,964,175	+				-1.0
2,964,175	+				+0.1
2,964,175	+				-0.2
2,964,175	+				-0.2
2,964,176	-				-1.8
2,964,176	-				-0.3
2,964,176	-				-0.5
2,964,176	-				+1.4
2,964,176	-				+1.1
2,964,176	-				+0.4
2,964,181	+				+0.5
2,964,181	+				-0.2
2,964,181	+				-1.1
2,964,181	+				-2.2
2,964,182	-				-2.1
2,964,182	-				-0.6
2,964,182	-				+0.4
2,964,182	-				-0.9
2,964,182	-				-1.2
2,964,182	-				-0.3
2,964,182	-				-1.5
2,964,202	+		Sama_2456	0.13	-0.6
2,964,202	+		Sama_2456	0.13	-0.9
2,964,203	-		Sama_2456	0.13	-1.5
2,964,203	-		Sama_2456	0.13	+0.5
2,964,240	+		Sama_2456	0.24	-1.5
2,964,342	+		Sama_2456	0.52	-0.4
2,964,420	+		Sama_2456	0.73	+1.1
2,964,421	-		Sama_2456	0.74	-0.1
2,964,467	+		Sama_2456	0.86	-0.3
2,964,467	+		Sama_2456	0.86	-1.0
2,964,467	+		Sama_2456	0.86	-1.1
2,964,467	+		Sama_2456	0.86	-1.1
2,964,467	+		Sama_2456	0.86	+0.1
2,964,468	-		Sama_2456	0.87	-0.7
2,964,468	-		Sama_2456	0.87	+0.4
2,964,482	+				-0.9
2,964,483	-				-0.3
2,964,491	-				-1.7
2,964,491	-				-2.2
2,964,491	-				+0.5
2,964,555	+				-0.0
2,964,556	-				-0.6
2,964,556	-				-0.2
2,964,556	-				+0.3
2,964,556	-				+0.7
2,964,556	-				-2.1
2,964,556	-				-1.4
2,964,556	-				-0.8
2,964,556	-				-0.0
2,964,586	-				+0.2
2,964,610	-				-0.3
2,964,753	+				-0.3
2,964,753	+				-1.1
2,964,754	-				+1.0
2,964,754	-				+1.9
2,964,840	+				-0.9
2,964,840	+				-0.9
2,964,841	-				-0.6
2,964,842	+				+0.3
2,964,857	-				-0.7
2,964,857	-				+0.0
2,964,862	+				+0.8
2,964,862	+				-0.6
2,964,863	-				+0.6
2,964,863	-				-0.1
2,964,968	+				+1.3
2,964,968	+				-1.0
2,964,969	-				+0.3
2,964,993	+				-0.5
2,964,994	-				+0.6
2,965,027	+		Sama_2457	0.11	-1.7
2,965,027	+		Sama_2457	0.11	-0.4
2,965,068	+		Sama_2457	0.14	+0.8
2,965,069	-		Sama_2457	0.14	-0.9
2,965,077	+		Sama_2457	0.14	+0.5
2,965,077	+		Sama_2457	0.14	-0.9
2,965,077	+		Sama_2457	0.14	+2.1
2,965,077	+		Sama_2457	0.14	-0.9
2,965,077	+		Sama_2457	0.14	-0.8
2,965,077	+		Sama_2457	0.14	-0.7
2,965,077	+		Sama_2457	0.14	-0.5
2,965,077	+		Sama_2457	0.14	-1.9
2,965,077	+		Sama_2457	0.14	+0.1
2,965,077	+		Sama_2457	0.14	+1.7
2,965,077	+		Sama_2457	0.14	-1.0
2,965,077	+		Sama_2457	0.14	-0.4
2,965,078	-		Sama_2457	0.14	-0.5
2,965,078	-		Sama_2457	0.14	-0.9
2,965,078	-		Sama_2457	0.14	-0.8
2,965,078	-		Sama_2457	0.14	+0.1
2,965,078	-		Sama_2457	0.14	-1.2
2,965,078	-		Sama_2457	0.14	-0.4
2,965,078	-		Sama_2457	0.14	-0.7
2,965,078	-		Sama_2457	0.14	-0.3
2,965,078	-		Sama_2457	0.14	+1.4
2,965,078	-		Sama_2457	0.14	-0.2
2,965,078	-		Sama_2457	0.14	-2.9
2,965,102	+		Sama_2457	0.16	-0.7
2,965,102	+		Sama_2457	0.16	+0.9
2,965,102	+		Sama_2457	0.16	+1.1
2,965,103	-		Sama_2457	0.16	+0.2
2,965,169	+		Sama_2457	0.21	+0.2
2,965,169	+		Sama_2457	0.21	+0.3
2,965,169	+		Sama_2457	0.21	+0.8
2,965,172	+		Sama_2457	0.21	-1.1
2,965,178	-		Sama_2457	0.21	-0.1
2,965,205	+		Sama_2457	0.23	-1.1
2,965,206	-		Sama_2457	0.23	+0.2
2,965,236	+		Sama_2457	0.25	-0.6
2,965,236	+		Sama_2457	0.25	+0.8
2,965,236	+		Sama_2457	0.25	-1.7
2,965,236	+		Sama_2457	0.25	-1.2
2,965,236	+		Sama_2457	0.25	-0.9
2,965,236	+		Sama_2457	0.25	+1.1
2,965,237	-		Sama_2457	0.25	-0.4
2,965,237	-		Sama_2457	0.25	-0.0
2,965,282	+		Sama_2457	0.28	-1.2
2,965,358	+		Sama_2457	0.33	+0.9
2,965,358	+		Sama_2457	0.33	+0.8
2,965,358	+		Sama_2457	0.33	-0.3
2,965,359	-		Sama_2457	0.33	-0.9
2,965,359	-		Sama_2457	0.33	+1.7
2,965,359	-		Sama_2457	0.33	+0.7
2,965,426	+		Sama_2457	0.38	-0.7
2,965,427	-		Sama_2457	0.38	-0.4
2,965,427	-		Sama_2457	0.38	-0.1
2,965,427	-		Sama_2457	0.38	-1.2
2,965,448	-		Sama_2457	0.39	-0.9
2,965,448	-		Sama_2457	0.39	+0.1
2,965,471	+		Sama_2457	0.41	+1.1
2,965,471	+		Sama_2457	0.41	+0.7
2,965,471	+		Sama_2457	0.41	-0.1
2,965,472	-		Sama_2457	0.41	-0.1
2,965,472	-		Sama_2457	0.41	-1.0
2,965,472	-		Sama_2457	0.41	-0.1
2,965,472	-		Sama_2457	0.41	+0.7
2,965,472	-		Sama_2457	0.41	+0.9
2,965,472	-		Sama_2457	0.41	+0.2
2,965,472	-		Sama_2457	0.41	-2.4