Strain Fitness in Shewanella amazonensis SB2B around Sama_1534

Experiment: L-Threonine (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Threonine (N)
1,864,111	+		Sama_1533	0.29	-1.3
1,864,111	+		Sama_1533	0.29	-0.8
1,864,200	+		Sama_1533	0.36	+0.1
1,864,206	+		Sama_1533	0.36	+0.1
1,864,232	-		Sama_1533	0.38	+0.5
1,864,232	-		Sama_1533	0.38	+1.8
1,864,232	-		Sama_1533	0.38	-1.3
1,864,232	-		Sama_1533	0.38	+0.4
1,864,253	+		Sama_1533	0.40	+1.3
1,864,282	-		Sama_1533	0.42	+0.6
1,864,284	+		Sama_1533	0.42	+0.2
1,864,284	+		Sama_1533	0.42	+1.9
1,864,284	+		Sama_1533	0.42	+0.8
1,864,284	+		Sama_1533	0.42	+0.8
1,864,284	+		Sama_1533	0.42	-0.2
1,864,320	+		Sama_1533	0.45	-0.9
1,864,321	-		Sama_1533	0.45	+2.1
1,864,330	+		Sama_1533	0.46	+1.2
1,864,331	-		Sama_1533	0.46	-0.7
1,864,331	-		Sama_1533	0.46	-0.9
1,864,366	+		Sama_1533	0.49	+1.0
1,864,367	-		Sama_1533	0.49	+0.5
1,864,384	+		Sama_1533	0.50	+2.1
1,864,385	-		Sama_1533	0.50	+0.6
1,864,455	+		Sama_1533	0.56	+0.1
1,864,455	+		Sama_1533	0.56	-0.8
1,864,455	+		Sama_1533	0.56	+0.7
1,864,456	-		Sama_1533	0.56	-0.5
1,864,456	-		Sama_1533	0.56	-2.0
1,864,479	+		Sama_1533	0.57	-0.2
1,864,649	+		Sama_1533	0.71	-0.1
1,864,650	-		Sama_1533	0.71	+0.3
1,864,668	+		Sama_1533	0.72	+0.1
1,864,687	+		Sama_1533	0.74	+1.6
1,864,687	+		Sama_1533	0.74	-2.0
1,864,687	+		Sama_1533	0.74	+2.4
1,864,783	-		Sama_1533	0.81	+1.2
1,864,819	+		Sama_1533	0.84	+0.9
1,864,819	+		Sama_1533	0.84	-0.7
1,864,819	+		Sama_1533	0.84	-0.0
1,864,820	-		Sama_1533	0.84	-0.3
1,864,968	+				+1.4
1,864,968	+				-0.4
1,864,968	+				-2.6
1,864,969	-				-0.6
1,865,003	+				+0.3
1,865,003	+				-0.7
1,865,003	+				-0.4
1,865,004	-				-0.5
1,865,046	-				-0.3
1,865,105	+				+0.3
1,865,105	+				-1.4
1,865,106	-				+0.8
1,865,106	-				-0.1
1,865,106	-				+1.9
1,865,109	+				-0.7
1,865,109	+				-2.9
1,865,110	-				+0.4
1,865,110	-				-0.4
1,865,113	+				-0.4
1,865,114	-				+0.3
1,865,136	-				-0.5
1,865,136	-				+1.4
1,865,136	-				+0.7
1,865,136	-				-0.2
1,865,201	-				+0.6
1,865,244	-		Sama_1534	0.10	-1.0
1,865,244	-		Sama_1534	0.10	-1.2
1,865,268	+		Sama_1534	0.12	-0.9
1,865,268	+		Sama_1534	0.12	-0.1
1,865,268	+		Sama_1534	0.12	+1.0
1,865,268	+		Sama_1534	0.12	+0.9
1,865,269	-		Sama_1534	0.12	-0.3
1,865,269	-		Sama_1534	0.12	-1.5
1,865,269	-		Sama_1534	0.12	+0.1
1,865,269	-		Sama_1534	0.12	-1.6
1,865,269	-		Sama_1534	0.12	+1.7
1,865,269	-		Sama_1534	0.12	-0.2
1,865,269	-		Sama_1534	0.12	+0.0
1,865,269	-		Sama_1534	0.12	-1.7
1,865,269	-		Sama_1534	0.12	-1.4
1,865,269	-		Sama_1534	0.12	+0.8
1,865,269	-		Sama_1534	0.12	-0.4
1,865,269	-		Sama_1534	0.12	-0.3
1,865,269	-		Sama_1534	0.12	+1.1
1,865,269	-		Sama_1534	0.12	+0.4
1,865,282	+		Sama_1534	0.13	+0.9
1,865,287	+		Sama_1534	0.13	-0.3
1,865,288	-		Sama_1534	0.14	+0.3
1,865,309	+		Sama_1534	0.15	-1.6
1,865,310	-		Sama_1534	0.15	-0.5
1,865,338	-		Sama_1534	0.17	+0.6
1,865,383	+		Sama_1534	0.21	+0.5
1,865,383	+		Sama_1534	0.21	-0.0
1,865,383	+		Sama_1534	0.21	-1.1
1,865,383	+		Sama_1534	0.21	+1.1
1,865,384	-		Sama_1534	0.21	+0.1
1,865,384	-		Sama_1534	0.21	-0.2
1,865,384	-		Sama_1534	0.21	-1.7
1,865,384	-		Sama_1534	0.21	-1.0
1,865,384	-		Sama_1534	0.21	+1.2
1,865,393	-		Sama_1534	0.21	-0.9
1,865,393	-		Sama_1534	0.21	+1.4
1,865,403	+		Sama_1534	0.22	-0.3
1,865,403	+		Sama_1534	0.22	+0.9
1,865,404	-		Sama_1534	0.22	-0.5
1,865,404	-		Sama_1534	0.22	-2.3
1,865,404	-		Sama_1534	0.22	-0.9
1,865,420	+		Sama_1534	0.24	-0.3
1,865,420	+		Sama_1534	0.24	+1.1
1,865,421	-		Sama_1534	0.24	-0.8
1,865,444	+		Sama_1534	0.25	-0.2
1,865,444	+		Sama_1534	0.25	-0.8
1,865,445	-		Sama_1534	0.25	-1.0
1,865,458	+		Sama_1534	0.26	-1.2
1,865,459	-		Sama_1534	0.26	+0.3
1,865,459	-		Sama_1534	0.26	+0.3
1,865,459	-		Sama_1534	0.26	-0.0
1,865,459	-		Sama_1534	0.26	-1.8
1,865,494	-		Sama_1534	0.29	+1.7
1,865,523	-		Sama_1534	0.31	+0.9
1,865,555	+		Sama_1534	0.34	-1.9
1,865,555	+		Sama_1534	0.34	+0.8
1,865,556	-		Sama_1534	0.34	+0.2
1,865,556	-		Sama_1534	0.34	-2.5
1,865,556	-		Sama_1534	0.34	-0.5
1,865,556	-		Sama_1534	0.34	+0.1
1,865,556	-		Sama_1534	0.34	-0.1
1,865,631	+		Sama_1534	0.39	+1.1
1,865,631	+		Sama_1534	0.39	+1.2
1,865,631	+		Sama_1534	0.39	-1.8
1,865,631	+		Sama_1534	0.39	-0.7
1,865,631	+		Sama_1534	0.39	+0.4
1,865,632	-		Sama_1534	0.40	+1.0
1,865,640	+		Sama_1534	0.40	+1.8
1,865,640	+		Sama_1534	0.40	+0.1
1,865,640	+		Sama_1534	0.40	-0.8
1,865,641	-		Sama_1534	0.40	-0.7
1,865,641	-		Sama_1534	0.40	+0.7
1,865,641	-		Sama_1534	0.40	+0.7
1,865,664	-		Sama_1534	0.42	+0.0
1,865,681	-		Sama_1534	0.43	-1.2
1,865,738	+		Sama_1534	0.48	-0.4
1,865,738	+		Sama_1534	0.48	+1.1
1,865,738	+		Sama_1534	0.48	-0.1
1,865,738	+		Sama_1534	0.48	-1.3
1,865,739	-		Sama_1534	0.48	-1.0
1,865,739	-		Sama_1534	0.48	+0.3
1,865,739	-		Sama_1534	0.48	+0.2
1,865,739	-		Sama_1534	0.48	-0.6
1,865,739	-		Sama_1534	0.48	+1.0
1,865,739	-		Sama_1534	0.48	+1.2
1,865,739	-		Sama_1534	0.48	-0.0
1,865,739	-		Sama_1534	0.48	-1.0
1,865,740	+		Sama_1534	0.48	-0.1
1,865,748	+		Sama_1534	0.48	-0.0
1,865,777	+		Sama_1534	0.50	+1.0
1,865,778	-		Sama_1534	0.51	-1.4
1,865,788	+		Sama_1534	0.51	-0.3
1,865,789	-		Sama_1534	0.51	-2.1
1,865,789	-		Sama_1534	0.51	-0.3
1,865,848	+		Sama_1534	0.56	-0.3
1,865,848	+		Sama_1534	0.56	-1.2
1,865,849	-		Sama_1534	0.56	-1.1
1,865,849	-		Sama_1534	0.56	+0.4
1,865,849	-		Sama_1534	0.56	-0.2
1,865,908	+		Sama_1534	0.60	-0.8
1,865,908	+		Sama_1534	0.60	-0.4
1,865,908	+		Sama_1534	0.60	+0.8
1,865,909	-		Sama_1534	0.60	-1.0
1,865,909	-		Sama_1534	0.60	-2.9
1,865,912	+		Sama_1534	0.61	-1.5
1,865,948	+		Sama_1534	0.63	-0.3
1,865,949	-		Sama_1534	0.63	+0.5
1,866,068	-		Sama_1534	0.72	-1.7
1,866,077	+		Sama_1534	0.73	-0.2
1,866,077	+		Sama_1534	0.73	-0.6
1,866,077	+		Sama_1534	0.73	-0.3
1,866,078	-		Sama_1534	0.73	+1.3
1,866,078	-		Sama_1534	0.73	+1.6
1,866,114	+		Sama_1534	0.76	-1.0
1,866,209	+		Sama_1534	0.83	+0.2
1,866,209	+		Sama_1534	0.83	+0.5
1,866,214	-		Sama_1534	0.83	-0.7
1,866,234	+		Sama_1534	0.85	-0.5
1,866,234	+		Sama_1534	0.85	+0.4
1,866,235	-		Sama_1534	0.85	-0.3
1,866,276	+		Sama_1534	0.88	+0.0
1,866,276	+		Sama_1534	0.88	+0.2
1,866,307	-				+0.4
1,866,372	-				+0.2
1,866,403	+				+0.4
1,866,403	+				+0.2
1,866,403	+				-0.4
1,866,405	+				-0.4
1,866,405	+				+0.3
1,866,405	+				+0.2
1,866,433	+				-1.1
1,866,442	-				+0.6
1,866,481	+				-1.0
1,866,564	+				+2.8
1,866,564	+				+0.5
1,866,567	+				+0.8
1,867,150	+				+0.5
1,867,151	-				+0.2
1,867,151	-				-2.0
1,867,219	-				-1.2
1,867,231	-				-0.9
1,867,233	-				+1.3
1,867,233	-				-0.5
1,867,278	+				-1.1
1,867,279	-				-1.8
1,867,279	-				-0.6
1,867,310	+				+1.0
1,867,313	-				+0.8
1,867,336	+				+1.2
1,867,367	+				+1.4
1,867,367	+				-0.7
1,867,368	-				-0.2
1,867,368	-				+2.7
1,867,369	+				-2.0
1,867,369	+				+0.4
1,867,404	+				-1.1