Strain Fitness in Shewanella amazonensis SB2B around Sama_0992

Experiment: L-Threonine (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Threonine (N)
1,199,285	-		Sama_0991	0.47	+0.4
1,199,290	+		Sama_0991	0.48	+0.5
1,199,290	+		Sama_0991	0.48	-1.1
1,199,290	+		Sama_0991	0.48	-0.5
1,199,290	+		Sama_0991	0.48	-0.8
1,199,291	-		Sama_0991	0.48	-0.4
1,199,291	-		Sama_0991	0.48	+0.7
1,199,291	-		Sama_0991	0.48	+1.3
1,199,291	-		Sama_0991	0.48	+0.5
1,199,291	-		Sama_0991	0.48	-1.2
1,199,393	+		Sama_0991	0.53	-0.1
1,199,393	+		Sama_0991	0.53	+0.7
1,199,393	+		Sama_0991	0.53	+0.0
1,199,393	+		Sama_0991	0.53	+0.3
1,199,394	-		Sama_0991	0.53	+0.4
1,199,508	+		Sama_0991	0.60	-0.9
1,199,514	+		Sama_0991	0.60	-2.6
1,199,514	+		Sama_0991	0.60	+0.7
1,199,514	+		Sama_0991	0.60	-0.9
1,199,514	+		Sama_0991	0.60	-0.2
1,199,515	-		Sama_0991	0.60	-1.1
1,199,515	-		Sama_0991	0.60	-0.6
1,199,515	-		Sama_0991	0.60	+1.5
1,199,515	-		Sama_0991	0.60	-1.5
1,199,515	-		Sama_0991	0.60	-0.1
1,199,581	+		Sama_0991	0.64	-0.1
1,199,581	+		Sama_0991	0.64	-1.8
1,199,599	+		Sama_0991	0.65	+1.4
1,199,600	-		Sama_0991	0.65	-0.0
1,199,600	-		Sama_0991	0.65	+0.5
1,199,744	+		Sama_0991	0.73	+0.1
1,199,744	+		Sama_0991	0.73	-2.4
1,199,745	-		Sama_0991	0.73	-1.1
1,199,745	-		Sama_0991	0.73	-0.7
1,199,745	-		Sama_0991	0.73	-0.4
1,199,917	-		Sama_0991	0.83	+0.9
1,199,943	+		Sama_0991	0.85	-0.0
1,199,943	+		Sama_0991	0.85	+0.1
1,199,944	-		Sama_0991	0.85	+0.2
1,199,944	-		Sama_0991	0.85	+1.1
1,199,944	-		Sama_0991	0.85	-1.7
1,199,987	+		Sama_0991	0.87	-0.7
1,199,987	+		Sama_0991	0.87	+0.2
1,199,987	+		Sama_0991	0.87	+0.8
1,199,988	-		Sama_0991	0.87	-1.3
1,199,988	-		Sama_0991	0.87	+0.6
1,199,988	-		Sama_0991	0.87	+0.2
1,199,990	+		Sama_0991	0.87	+0.5
1,199,991	-		Sama_0991	0.87	-0.4
1,199,991	-		Sama_0991	0.87	-2.6
1,200,014	+		Sama_0991	0.89	+0.4
1,200,014	+		Sama_0991	0.89	-1.0
1,200,015	-		Sama_0991	0.89	+0.9
1,200,015	-		Sama_0991	0.89	+0.4
1,200,015	-		Sama_0991	0.89	-0.3
1,200,058	-				-1.4
1,200,058	-				-0.5
1,200,058	-				-0.8
1,200,058	-				-1.7
1,200,068	+				+0.4
1,200,095	+				+0.9
1,200,115	-				-1.4
1,200,115	-				-0.2
1,200,187	-				+0.6
1,200,194	+				-0.0
1,200,195	-				+0.2
1,200,195	-				+0.0
1,200,198	+				+2.5
1,200,198	+				-1.3
1,200,198	+				-0.1
1,200,199	-				-0.1
1,200,199	-				+0.8
1,200,203	+				+0.5
1,200,354	+		Sama_0992	0.15	-1.1
1,200,386	+		Sama_0992	0.19	+2.4
1,200,386	+		Sama_0992	0.19	-0.0
1,200,386	+		Sama_0992	0.19	-0.7
1,200,386	+		Sama_0992	0.19	+0.2
1,200,489	-		Sama_0992	0.31	-0.0
1,200,534	-		Sama_0992	0.36	+0.9
1,200,534	-		Sama_0992	0.36	+0.9
1,200,534	-		Sama_0992	0.36	-0.4
1,200,558	-		Sama_0992	0.39	-0.4
1,200,614	+		Sama_0992	0.46	+1.4
1,200,614	+		Sama_0992	0.46	-0.2
1,200,691	+		Sama_0992	0.55	-0.7
1,200,691	+		Sama_0992	0.55	+2.7
1,200,691	+		Sama_0992	0.55	+0.9
1,200,692	-		Sama_0992	0.55	+1.4
1,200,692	-		Sama_0992	0.55	+1.0
1,200,800	+		Sama_0992	0.68	-0.6
1,200,906	+		Sama_0992	0.80	-1.3
1,200,907	-		Sama_0992	0.80	-0.4
1,200,932	+		Sama_0992	0.83	-1.9
1,200,938	+		Sama_0992	0.84	-1.1
1,200,939	-		Sama_0992	0.84	+0.1
1,200,985	-		Sama_0992	0.89	+2.6
1,200,994	+				-1.8
1,200,994	+				-0.3
1,200,994	+				+0.4
1,200,995	-				+0.4
1,200,995	-				+1.6
1,200,995	-				+2.1
1,200,995	-				-0.7
1,200,995	-				+0.6
1,201,100	+				+0.7
1,201,100	+				+0.6
1,201,100	+				+0.6
1,201,100	+				-1.1
1,201,100	+				+0.8
1,201,101	-				-0.7
1,201,101	-				-1.5
1,201,101	-				-1.3
1,201,101	-				-0.4
1,201,107	+				+1.0
1,201,107	+				-0.1
1,201,107	+				-1.9
1,201,107	+				+1.9
1,201,108	-				-0.1
1,201,108	-				-0.0
1,201,161	+				-0.5
1,201,161	+				-0.7
1,201,275	+				-1.8
1,201,276	-				+0.3
1,201,282	+				-1.6
1,201,309	+				-1.5
1,201,309	+				-1.1
1,201,309	+				-0.7
1,201,325	-				+0.1
1,201,343	-				+0.2
1,201,343	-				+0.3
1,201,343	-				+0.4
1,201,367	-				-0.5
1,201,386	+				-0.0
1,201,387	-				-1.6
1,201,397	+				-0.4
1,201,397	+				-0.8
1,201,397	+				-0.3
1,201,398	-				+2.0
1,201,424	-				-0.6
1,201,424	-				+0.3
1,201,478	-				-1.9
1,201,548	+		Sama_0993	0.10	-0.9
1,201,548	+		Sama_0993	0.10	-0.4
1,201,554	+		Sama_0993	0.10	+0.2
1,201,555	-		Sama_0993	0.11	+0.3
1,201,555	-		Sama_0993	0.11	-0.9
1,201,555	-		Sama_0993	0.11	-0.4
1,201,612	-		Sama_0993	0.12	+0.4
1,201,661	+		Sama_0993	0.13	+0.4
1,201,720	+		Sama_0993	0.15	+0.4
1,201,720	+		Sama_0993	0.15	-0.6
1,201,721	-		Sama_0993	0.15	+0.1
1,201,721	-		Sama_0993	0.15	-0.1
1,201,721	-		Sama_0993	0.15	+0.7
1,201,747	-		Sama_0993	0.16	-0.3
1,201,747	-		Sama_0993	0.16	-2.1
1,201,870	+		Sama_0993	0.19	-1.3
1,201,870	+		Sama_0993	0.19	+0.2
1,201,871	-		Sama_0993	0.19	+0.4
1,201,871	-		Sama_0993	0.19	+2.0
1,201,871	-		Sama_0993	0.19	+2.2
1,201,873	+		Sama_0993	0.19	-1.4
1,201,873	+		Sama_0993	0.19	-1.4
1,201,874	-		Sama_0993	0.19	-0.3
1,201,874	-		Sama_0993	0.19	-0.5
1,202,002	+		Sama_0993	0.22	-0.3