Experiment: L-Threonine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0158 and Sama_0159 are separated by 226 nucleotides Sama_0159 and Sama_0160 are separated by 137 nucleotides
Sama_0158: Sama_0158 - LysR family transcriptional regulator (RefSeq), at 186,759 to 187,667
_0158
Sama_0159: Sama_0159 - hypothetical protein (RefSeq), at 187,894 to 188,409
_0159
Sama_0160: Sama_0160 - glutamate synthase domain-containing protein (RefSeq), at 188,547 to 190,193
_0160
Position (kb) 187
188
189 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 186.964 kb on + strand, within Sama_0158 at 186.964 kb on + strand, within Sama_0158 at 186.965 kb on - strand, within Sama_0158 at 187.034 kb on + strand, within Sama_0158 at 187.034 kb on + strand, within Sama_0158 at 187.035 kb on - strand, within Sama_0158 at 187.035 kb on - strand, within Sama_0158 at 187.035 kb on - strand, within Sama_0158 at 187.035 kb on - strand, within Sama_0158 at 187.044 kb on - strand, within Sama_0158 at 187.052 kb on + strand, within Sama_0158 at 187.052 kb on + strand, within Sama_0158 at 187.052 kb on + strand, within Sama_0158 at 187.053 kb on - strand, within Sama_0158 at 187.053 kb on - strand, within Sama_0158 at 187.053 kb on - strand, within Sama_0158 at 187.055 kb on + strand, within Sama_0158 at 187.056 kb on - strand, within Sama_0158 at 187.056 kb on - strand, within Sama_0158 at 187.228 kb on + strand, within Sama_0158 at 187.244 kb on - strand, within Sama_0158 at 187.278 kb on + strand, within Sama_0158 at 187.278 kb on + strand, within Sama_0158 at 187.278 kb on + strand, within Sama_0158 at 187.279 kb on - strand, within Sama_0158 at 187.279 kb on - strand, within Sama_0158 at 187.279 kb on - strand, within Sama_0158 at 187.325 kb on + strand, within Sama_0158 at 187.325 kb on + strand, within Sama_0158 at 187.325 kb on + strand, within Sama_0158 at 187.325 kb on + strand, within Sama_0158 at 187.325 kb on + strand, within Sama_0158 at 187.325 kb on + strand, within Sama_0158 at 187.325 kb on + strand, within Sama_0158 at 187.325 kb on + strand, within Sama_0158 at 187.325 kb on + strand, within Sama_0158 at 187.325 kb on + strand, within Sama_0158 at 187.326 kb on - strand, within Sama_0158 at 187.326 kb on - strand, within Sama_0158 at 187.326 kb on - strand, within Sama_0158 at 187.326 kb on - strand, within Sama_0158 at 187.326 kb on - strand, within Sama_0158 at 187.326 kb on - strand, within Sama_0158 at 187.326 kb on - strand, within Sama_0158 at 187.394 kb on + strand, within Sama_0158 at 187.395 kb on - strand, within Sama_0158 at 187.470 kb on + strand, within Sama_0158 at 187.540 kb on - strand, within Sama_0158 at 187.556 kb on + strand, within Sama_0158 at 187.578 kb on + strand at 187.579 kb on - strand at 187.585 kb on + strand at 187.619 kb on + strand at 187.620 kb on - strand at 187.644 kb on + strand at 187.644 kb on + strand at 187.644 kb on + strand at 187.644 kb on + strand at 187.644 kb on + strand at 187.644 kb on + strand at 187.645 kb on - strand at 187.645 kb on - strand at 187.645 kb on - strand at 187.645 kb on - strand at 187.723 kb on + strand at 187.724 kb on - strand at 187.724 kb on - strand at 187.733 kb on + strand at 187.779 kb on + strand at 187.779 kb on + strand at 187.789 kb on + strand at 187.789 kb on + strand at 187.789 kb on + strand at 187.789 kb on + strand at 187.789 kb on + strand at 187.790 kb on - strand at 187.790 kb on - strand at 187.790 kb on - strand at 187.800 kb on + strand at 187.800 kb on + strand at 187.800 kb on + strand at 187.800 kb on + strand at 187.801 kb on - strand at 187.801 kb on - strand at 187.801 kb on - strand at 187.801 kb on - strand at 187.801 kb on - strand at 187.801 kb on - strand at 187.820 kb on + strand at 187.820 kb on + strand at 187.820 kb on + strand at 187.820 kb on + strand at 187.821 kb on - strand at 187.821 kb on - strand at 187.821 kb on - strand at 187.821 kb on - strand at 187.821 kb on - strand at 187.821 kb on - strand at 187.821 kb on - strand at 187.821 kb on - strand at 187.821 kb on - strand at 187.888 kb on - strand at 187.888 kb on - strand at 187.888 kb on - strand at 187.888 kb on - strand at 187.991 kb on + strand, within Sama_0159 at 187.991 kb on + strand, within Sama_0159 at 187.991 kb on + strand, within Sama_0159 at 187.991 kb on + strand, within Sama_0159 at 187.991 kb on + strand, within Sama_0159 at 187.991 kb on + strand, within Sama_0159 at 187.991 kb on + strand, within Sama_0159 at 187.991 kb on + strand, within Sama_0159 at 187.991 kb on + strand, within Sama_0159 at 187.991 kb on + strand, within Sama_0159 at 187.992 kb on - strand, within Sama_0159 at 187.992 kb on - strand, within Sama_0159 at 187.992 kb on - strand, within Sama_0159 at 187.992 kb on - strand, within Sama_0159 at 188.026 kb on + strand, within Sama_0159 at 188.046 kb on + strand, within Sama_0159 at 188.047 kb on - strand, within Sama_0159 at 188.130 kb on + strand, within Sama_0159 at 188.131 kb on - strand, within Sama_0159 at 188.143 kb on + strand, within Sama_0159 at 188.143 kb on + strand, within Sama_0159 at 188.143 kb on + strand, within Sama_0159 at 188.143 kb on + strand, within Sama_0159 at 188.143 kb on + strand, within Sama_0159 at 188.143 kb on + strand, within Sama_0159 at 188.143 kb on + strand, within Sama_0159 at 188.143 kb on + strand, within Sama_0159 at 188.143 kb on + strand, within Sama_0159 at 188.143 kb on + strand, within Sama_0159 at 188.143 kb on + strand, within Sama_0159 at 188.143 kb on + strand, within Sama_0159 at 188.143 kb on + strand, within Sama_0159 at 188.143 kb on + strand, within Sama_0159 at 188.143 kb on + strand, within Sama_0159 at 188.144 kb on - strand, within Sama_0159 at 188.144 kb on - strand, within Sama_0159 at 188.144 kb on - strand, within Sama_0159 at 188.144 kb on - strand, within Sama_0159 at 188.225 kb on + strand, within Sama_0159 at 188.226 kb on - strand, within Sama_0159 at 188.230 kb on + strand, within Sama_0159 at 188.230 kb on + strand, within Sama_0159 at 188.230 kb on + strand, within Sama_0159 at 188.231 kb on - strand, within Sama_0159 at 188.231 kb on - strand, within Sama_0159 at 188.231 kb on - strand, within Sama_0159 at 188.231 kb on - strand, within Sama_0159 at 188.350 kb on + strand, within Sama_0159 at 188.412 kb on + strand at 188.412 kb on + strand at 188.412 kb on + strand at 188.412 kb on + strand at 188.412 kb on + strand at 188.412 kb on + strand at 188.412 kb on + strand at 188.413 kb on - strand at 188.413 kb on - strand at 188.413 kb on - strand at 188.413 kb on - strand at 188.413 kb on - strand at 188.413 kb on - strand at 188.413 kb on - strand at 188.413 kb on - strand at 188.417 kb on + strand at 188.418 kb on - strand at 188.418 kb on - strand at 188.418 kb on - strand at 188.464 kb on + strand at 188.464 kb on + strand at 188.464 kb on + strand at 188.464 kb on + strand at 188.464 kb on + strand at 188.465 kb on - strand at 188.465 kb on - strand at 188.465 kb on - strand at 188.465 kb on - strand at 188.476 kb on - strand at 188.540 kb on + strand at 188.540 kb on + strand at 188.540 kb on + strand at 188.540 kb on + strand at 188.540 kb on + strand at 188.540 kb on + strand at 188.541 kb on - strand at 188.541 kb on - strand at 188.541 kb on - strand at 188.541 kb on - strand at 188.546 kb on + strand at 188.546 kb on + strand at 188.546 kb on + strand at 188.546 kb on + strand at 188.546 kb on + strand at 188.546 kb on + strand at 188.546 kb on + strand at 188.546 kb on + strand at 188.547 kb on - strand at 188.547 kb on - strand at 188.547 kb on - strand at 188.547 kb on - strand at 188.547 kb on - strand at 188.547 kb on - strand at 188.547 kb on - strand at 188.569 kb on - strand at 188.569 kb on - strand at 188.615 kb on + strand at 188.616 kb on - strand at 188.616 kb on - strand at 188.658 kb on - strand at 188.668 kb on - strand at 188.668 kb on - strand at 188.668 kb on - strand at 188.692 kb on + strand at 188.692 kb on + strand at 188.693 kb on - strand at 188.693 kb on - strand at 188.693 kb on - strand at 188.693 kb on - strand at 188.693 kb on - strand at 188.708 kb on + strand at 188.739 kb on + strand, within Sama_0160 at 188.739 kb on + strand, within Sama_0160 at 188.739 kb on + strand, within Sama_0160 at 188.739 kb on + strand, within Sama_0160 at 188.739 kb on + strand, within Sama_0160 at 188.740 kb on - strand, within Sama_0160 at 188.740 kb on - strand, within Sama_0160 at 188.740 kb on - strand, within Sama_0160 at 188.742 kb on - strand, within Sama_0160 at 188.742 kb on - strand, within Sama_0160 at 188.784 kb on + strand, within Sama_0160 at 188.784 kb on + strand, within Sama_0160 at 188.784 kb on + strand, within Sama_0160 at 188.785 kb on - strand, within Sama_0160 at 188.785 kb on - strand, within Sama_0160 at 188.844 kb on + strand, within Sama_0160 at 188.844 kb on + strand, within Sama_0160 at 188.844 kb on + strand, within Sama_0160 at 188.844 kb on + strand, within Sama_0160 at 188.844 kb on + strand, within Sama_0160 at 188.845 kb on - strand, within Sama_0160 at 188.845 kb on - strand, within Sama_0160 at 188.845 kb on - strand, within Sama_0160 at 188.845 kb on - strand, within Sama_0160 at 188.899 kb on + strand, within Sama_0160 at 188.899 kb on + strand, within Sama_0160 at 188.899 kb on + strand, within Sama_0160 at 188.900 kb on - strand, within Sama_0160 at 188.909 kb on + strand, within Sama_0160 at 188.910 kb on - strand, within Sama_0160 at 188.910 kb on - strand, within Sama_0160 at 188.910 kb on - strand, within Sama_0160 at 188.913 kb on + strand, within Sama_0160 at 188.913 kb on + strand, within Sama_0160 at 188.913 kb on + strand, within Sama_0160 at 188.913 kb on + strand, within Sama_0160 at 188.913 kb on + strand, within Sama_0160 at 188.913 kb on + strand, within Sama_0160 at 188.913 kb on + strand, within Sama_0160 at 188.913 kb on + strand, within Sama_0160 at 188.914 kb on - strand, within Sama_0160 at 188.914 kb on - strand, within Sama_0160 at 188.914 kb on - strand, within Sama_0160 at 188.935 kb on + strand, within Sama_0160 at 188.936 kb on - strand, within Sama_0160 at 188.950 kb on + strand, within Sama_0160 at 188.995 kb on + strand, within Sama_0160 at 188.995 kb on + strand, within Sama_0160 at 188.996 kb on - strand, within Sama_0160 at 189.003 kb on + strand, within Sama_0160 at 189.023 kb on + strand, within Sama_0160 at 189.024 kb on - strand, within Sama_0160 at 189.024 kb on - strand, within Sama_0160 at 189.107 kb on + strand, within Sama_0160 at 189.330 kb on - strand, within Sama_0160 at 189.330 kb on - strand, within Sama_0160 at 189.357 kb on - strand, within Sama_0160
Per-strain Table
Position Strand Gene LocusTag Fraction L-Threonine (N) remove 186,964 + Sama_0158 0.23 +0.9 186,964 + Sama_0158 0.23 +0.3 186,965 - Sama_0158 0.23 -1.3 187,034 + Sama_0158 0.30 -0.3 187,034 + Sama_0158 0.30 -1.0 187,035 - Sama_0158 0.30 -1.0 187,035 - Sama_0158 0.30 -2.0 187,035 - Sama_0158 0.30 -0.3 187,035 - Sama_0158 0.30 -0.8 187,044 - Sama_0158 0.31 -0.6 187,052 + Sama_0158 0.32 -0.1 187,052 + Sama_0158 0.32 -0.9 187,052 + Sama_0158 0.32 +2.3 187,053 - Sama_0158 0.32 -1.8 187,053 - Sama_0158 0.32 +3.0 187,053 - Sama_0158 0.32 +0.2 187,055 + Sama_0158 0.33 +0.1 187,056 - Sama_0158 0.33 +2.2 187,056 - Sama_0158 0.33 -0.5 187,228 + Sama_0158 0.52 +1.2 187,244 - Sama_0158 0.53 -0.6 187,278 + Sama_0158 0.57 +0.3 187,278 + Sama_0158 0.57 +0.6 187,278 + Sama_0158 0.57 -2.1 187,279 - Sama_0158 0.57 -1.1 187,279 - Sama_0158 0.57 +0.5 187,279 - Sama_0158 0.57 +0.8 187,325 + Sama_0158 0.62 +1.6 187,325 + Sama_0158 0.62 -2.1 187,325 + Sama_0158 0.62 +0.2 187,325 + Sama_0158 0.62 -0.3 187,325 + Sama_0158 0.62 +0.1 187,325 + Sama_0158 0.62 -0.4 187,325 + Sama_0158 0.62 -1.6 187,325 + Sama_0158 0.62 -0.1 187,325 + Sama_0158 0.62 +0.2 187,325 + Sama_0158 0.62 -0.3 187,326 - Sama_0158 0.62 -0.9 187,326 - Sama_0158 0.62 +0.1 187,326 - Sama_0158 0.62 -1.3 187,326 - Sama_0158 0.62 +2.0 187,326 - Sama_0158 0.62 -1.4 187,326 - Sama_0158 0.62 +1.6 187,326 - Sama_0158 0.62 -1.6 187,394 + Sama_0158 0.70 -2.0 187,395 - Sama_0158 0.70 +0.9 187,470 + Sama_0158 0.78 +1.2 187,540 - Sama_0158 0.86 +0.9 187,556 + Sama_0158 0.88 -0.1 187,578 + -1.9 187,579 - +0.6 187,585 + -0.3 187,619 + +1.1 187,620 - +0.5 187,644 + -0.6 187,644 + -0.7 187,644 + +0.7 187,644 + +1.0 187,644 + +0.5 187,644 + +0.3 187,645 - -0.1 187,645 - +0.2 187,645 - -0.2 187,645 - +4.1 187,723 + -0.1 187,724 - +0.4 187,724 - -0.3 187,733 + -0.1 187,779 + -0.7 187,779 + -0.7 187,789 + +0.1 187,789 + -1.1 187,789 + -0.4 187,789 + -0.2 187,789 + -0.6 187,790 - +0.5 187,790 - +1.4 187,790 - -0.4 187,800 + -0.8 187,800 + +0.1 187,800 + -0.6 187,800 + -1.0 187,801 - -1.7 187,801 - -2.0 187,801 - -0.1 187,801 - -1.7 187,801 - -0.9 187,801 - -1.1 187,820 + -1.0 187,820 + +0.4 187,820 + +2.8 187,820 + -0.1 187,821 - +0.3 187,821 - +0.9 187,821 - +0.8 187,821 - +1.5 187,821 - -1.8 187,821 - +0.5 187,821 - +0.1 187,821 - -0.6 187,821 - +0.4 187,888 - -0.6 187,888 - -1.0 187,888 - -1.5 187,888 - -0.3 187,991 + Sama_0159 0.19 -0.0 187,991 + Sama_0159 0.19 -0.1 187,991 + Sama_0159 0.19 -0.6 187,991 + Sama_0159 0.19 -0.2 187,991 + Sama_0159 0.19 -1.3 187,991 + Sama_0159 0.19 +0.1 187,991 + Sama_0159 0.19 -1.5 187,991 + Sama_0159 0.19 +0.3 187,991 + Sama_0159 0.19 -0.2 187,991 + Sama_0159 0.19 +1.4 187,992 - Sama_0159 0.19 +1.2 187,992 - Sama_0159 0.19 +0.4 187,992 - Sama_0159 0.19 +1.2 187,992 - Sama_0159 0.19 +0.4 188,026 + Sama_0159 0.26 +1.0 188,046 + Sama_0159 0.29 +0.3 188,047 - Sama_0159 0.30 -2.6 188,130 + Sama_0159 0.46 -0.6 188,131 - Sama_0159 0.46 +0.1 188,143 + Sama_0159 0.48 +2.6 188,143 + Sama_0159 0.48 +0.2 188,143 + Sama_0159 0.48 -0.1 188,143 + Sama_0159 0.48 -0.5 188,143 + Sama_0159 0.48 +0.0 188,143 + Sama_0159 0.48 +0.3 188,143 + Sama_0159 0.48 -0.7 188,143 + Sama_0159 0.48 +0.8 188,143 + Sama_0159 0.48 +1.5 188,143 + Sama_0159 0.48 -1.0 188,143 + Sama_0159 0.48 -0.1 188,143 + Sama_0159 0.48 +1.2 188,143 + Sama_0159 0.48 +0.2 188,143 + Sama_0159 0.48 +1.4 188,143 + Sama_0159 0.48 +0.1 188,144 - Sama_0159 0.48 -1.7 188,144 - Sama_0159 0.48 +0.2 188,144 - Sama_0159 0.48 +0.3 188,144 - Sama_0159 0.48 +0.2 188,225 + Sama_0159 0.64 +1.4 188,226 - Sama_0159 0.64 -0.5 188,230 + Sama_0159 0.65 +0.6 188,230 + Sama_0159 0.65 +0.0 188,230 + Sama_0159 0.65 -1.0 188,231 - Sama_0159 0.65 -0.3 188,231 - Sama_0159 0.65 +0.7 188,231 - Sama_0159 0.65 -0.5 188,231 - Sama_0159 0.65 +0.6 188,350 + Sama_0159 0.88 -2.3 188,412 + +0.1 188,412 + +0.1 188,412 + +1.3 188,412 + -0.6 188,412 + -1.3 188,412 + -1.8 188,412 + -1.1 188,413 - +0.1 188,413 - -0.6 188,413 - -1.9 188,413 - -0.7 188,413 - -0.3 188,413 - -0.8 188,413 - -1.0 188,413 - -0.6 188,417 + +0.4 188,418 - +0.2 188,418 - +0.9 188,418 - -0.4 188,464 + +1.3 188,464 + +1.1 188,464 + -1.6 188,464 + +0.1 188,464 + +1.7 188,465 - -0.2 188,465 - +0.4 188,465 - -0.7 188,465 - -0.0 188,476 - +0.4 188,540 + -1.6 188,540 + -0.8 188,540 + +1.8 188,540 + -0.7 188,540 + +1.3 188,540 + +0.6 188,541 - -1.0 188,541 - -0.6 188,541 - -0.6 188,541 - +0.1 188,546 + -0.3 188,546 + +1.0 188,546 + +1.4 188,546 + -0.5 188,546 + -0.2 188,546 + -1.8 188,546 + -0.4 188,546 + -0.0 188,547 - -0.9 188,547 - +1.6 188,547 - -0.7 188,547 - +0.5 188,547 - -0.2 188,547 - -0.6 188,547 - -0.0 188,569 - +1.1 188,569 - -0.6 188,615 + -1.4 188,616 - -2.9 188,616 - -0.9 188,658 - -0.1 188,668 - +0.9 188,668 - +1.1 188,668 - -0.3 188,692 + +1.4 188,692 + -0.1 188,693 - +0.4 188,693 - -2.0 188,693 - +0.1 188,693 - -1.3 188,693 - +0.4 188,708 + +0.6 188,739 + Sama_0160 0.12 +1.8 188,739 + Sama_0160 0.12 +0.3 188,739 + Sama_0160 0.12 -0.5 188,739 + Sama_0160 0.12 +0.0 188,739 + Sama_0160 0.12 -0.1 188,740 - Sama_0160 0.12 -2.6 188,740 - Sama_0160 0.12 -0.0 188,740 - Sama_0160 0.12 +0.5 188,742 - Sama_0160 0.12 -1.0 188,742 - Sama_0160 0.12 +0.2 188,784 + Sama_0160 0.14 +0.3 188,784 + Sama_0160 0.14 -0.1 188,784 + Sama_0160 0.14 -0.0 188,785 - Sama_0160 0.14 -2.0 188,785 - Sama_0160 0.14 -1.1 188,844 + Sama_0160 0.18 -1.8 188,844 + Sama_0160 0.18 -1.1 188,844 + Sama_0160 0.18 +0.9 188,844 + Sama_0160 0.18 -1.1 188,844 + Sama_0160 0.18 -1.0 188,845 - Sama_0160 0.18 +0.1 188,845 - Sama_0160 0.18 +1.4 188,845 - Sama_0160 0.18 +0.1 188,845 - Sama_0160 0.18 -1.3 188,899 + Sama_0160 0.21 +0.2 188,899 + Sama_0160 0.21 +1.6 188,899 + Sama_0160 0.21 +0.7 188,900 - Sama_0160 0.21 +0.7 188,909 + Sama_0160 0.22 -1.3 188,910 - Sama_0160 0.22 +1.6 188,910 - Sama_0160 0.22 +0.4 188,910 - Sama_0160 0.22 -0.8 188,913 + Sama_0160 0.22 +0.2 188,913 + Sama_0160 0.22 +0.0 188,913 + Sama_0160 0.22 -1.6 188,913 + Sama_0160 0.22 +0.8 188,913 + Sama_0160 0.22 -0.1 188,913 + Sama_0160 0.22 +0.9 188,913 + Sama_0160 0.22 -1.0 188,913 + Sama_0160 0.22 -1.0 188,914 - Sama_0160 0.22 +0.0 188,914 - Sama_0160 0.22 +0.0 188,914 - Sama_0160 0.22 -0.9 188,935 + Sama_0160 0.24 +0.1 188,936 - Sama_0160 0.24 +0.3 188,950 + Sama_0160 0.24 +0.3 188,995 + Sama_0160 0.27 +0.7 188,995 + Sama_0160 0.27 -0.1 188,996 - Sama_0160 0.27 -0.5 189,003 + Sama_0160 0.28 +0.3 189,023 + Sama_0160 0.29 -0.4 189,024 - Sama_0160 0.29 -1.9 189,024 - Sama_0160 0.29 -0.7 189,107 + Sama_0160 0.34 +0.9 189,330 - Sama_0160 0.48 -1.2 189,330 - Sama_0160 0.48 -1.1 189,357 - Sama_0160 0.49 +1.3
Or see this region's nucleotide sequence