Experiment: Fumarate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt
Dshi_4067: Dshi_4067 - hypothetical protein (RefSeq), at 42 to 731
_4067
Position (kb) 0
1 Strain fitness (log2 ratio) -1
0
1
2 at 0.049 kb on + strand at 0.228 kb on - strand, within Dshi_4067 at 0.481 kb on - strand, within Dshi_4067 at 0.545 kb on - strand, within Dshi_4067 at 0.552 kb on - strand, within Dshi_4067 at 0.553 kb on - strand, within Dshi_4067 at 0.599 kb on - strand, within Dshi_4067 at 0.682 kb on - strand at 0.689 kb on - strand at 0.791 kb on - strand at 0.803 kb on + strand at 0.861 kb on + strand at 0.862 kb on - strand at 0.869 kb on - strand at 0.880 kb on + strand at 0.880 kb on + strand at 0.880 kb on + strand at 0.884 kb on + strand at 0.902 kb on + strand at 0.903 kb on - strand at 0.908 kb on - strand at 0.913 kb on - strand at 0.920 kb on - strand at 0.927 kb on - strand at 0.942 kb on - strand at 0.955 kb on + strand at 0.955 kb on + strand at 0.960 kb on + strand at 0.960 kb on + strand at 0.963 kb on + strand at 0.963 kb on - strand at 0.965 kb on + strand at 0.965 kb on + strand at 0.971 kb on + strand at 0.973 kb on - strand at 0.973 kb on - strand at 1.039 kb on + strand at 1.039 kb on + strand at 1.039 kb on + strand at 1.039 kb on + strand at 1.040 kb on - strand at 1.041 kb on - strand at 1.047 kb on - strand at 1.047 kb on - strand at 1.047 kb on - strand at 1.054 kb on + strand at 1.056 kb on - strand at 1.062 kb on + strand at 1.068 kb on - strand at 1.070 kb on - strand at 1.070 kb on - strand at 1.070 kb on - strand at 1.072 kb on - strand at 1.087 kb on + strand at 1.106 kb on + strand at 1.107 kb on - strand at 1.107 kb on - strand at 1.110 kb on - strand at 1.114 kb on + strand at 1.115 kb on - strand at 1.116 kb on + strand at 1.121 kb on + strand at 1.127 kb on + strand at 1.129 kb on + strand at 1.129 kb on + strand at 1.135 kb on - strand at 1.140 kb on + strand at 1.140 kb on + strand at 1.146 kb on + strand at 1.153 kb on + strand at 1.153 kb on - strand at 1.155 kb on + strand at 1.155 kb on + strand at 1.163 kb on - strand at 1.163 kb on - strand at 1.163 kb on - strand at 1.163 kb on - strand at 1.166 kb on - strand at 1.185 kb on + strand at 1.188 kb on - strand at 1.190 kb on + strand at 1.193 kb on - strand at 1.193 kb on - strand at 1.200 kb on + strand at 1.208 kb on - strand at 1.238 kb on + strand at 1.254 kb on + strand at 1.254 kb on + strand at 1.256 kb on + strand at 1.256 kb on + strand at 1.256 kb on + strand at 1.256 kb on + strand at 1.256 kb on + strand at 1.256 kb on + strand at 1.256 kb on + strand at 1.256 kb on + strand at 1.256 kb on + strand at 1.256 kb on + strand at 1.256 kb on + strand at 1.256 kb on + strand at 1.256 kb on + strand at 1.256 kb on + strand at 1.256 kb on + strand at 1.256 kb on + strand at 1.256 kb on + strand at 1.256 kb on + strand at 1.256 kb on + strand at 1.256 kb on - strand at 1.257 kb on - strand at 1.262 kb on - strand at 1.262 kb on - strand at 1.264 kb on - strand at 1.264 kb on - strand at 1.264 kb on - strand at 1.264 kb on - strand at 1.264 kb on - strand at 1.264 kb on - strand at 1.264 kb on - strand at 1.264 kb on - strand at 1.264 kb on - strand at 1.264 kb on - strand at 1.264 kb on - strand at 1.278 kb on - strand at 1.280 kb on + strand at 1.282 kb on + strand at 1.283 kb on + strand at 1.285 kb on + strand at 1.285 kb on + strand at 1.285 kb on + strand at 1.285 kb on + strand at 1.285 kb on + strand at 1.288 kb on - strand at 1.291 kb on - strand at 1.293 kb on - strand at 1.293 kb on - strand at 1.293 kb on - strand at 1.293 kb on - strand at 1.293 kb on - strand at 1.298 kb on - strand at 1.298 kb on - strand at 1.317 kb on + strand at 1.333 kb on + strand at 1.341 kb on - strand at 1.356 kb on - strand at 1.384 kb on + strand at 1.389 kb on + strand at 1.394 kb on + strand at 1.394 kb on + strand at 1.394 kb on + strand at 1.397 kb on - strand at 1.397 kb on - strand at 1.402 kb on + strand at 1.402 kb on + strand at 1.412 kb on + strand at 1.412 kb on - strand at 1.417 kb on + strand at 1.425 kb on - strand at 1.435 kb on - strand at 1.451 kb on + strand at 1.459 kb on - strand at 1.459 kb on - strand at 1.481 kb on + strand at 1.489 kb on - strand at 1.489 kb on - strand at 1.489 kb on - strand at 1.494 kb on + strand at 1.495 kb on - strand at 1.495 kb on - strand at 1.495 kb on - strand at 1.517 kb on + strand at 1.517 kb on + strand at 1.519 kb on - strand at 1.525 kb on - strand at 1.527 kb on + strand at 1.527 kb on + strand at 1.527 kb on + strand at 1.527 kb on + strand at 1.527 kb on + strand at 1.527 kb on + strand at 1.527 kb on + strand at 1.527 kb on + strand at 1.530 kb on - strand at 1.532 kb on + strand at 1.532 kb on + strand at 1.535 kb on - strand at 1.535 kb on - strand at 1.535 kb on - strand at 1.535 kb on - strand at 1.535 kb on - strand at 1.535 kb on - strand at 1.535 kb on - strand at 1.535 kb on - strand at 1.535 kb on - strand at 1.535 kb on - strand at 1.540 kb on - strand at 1.540 kb on - strand at 1.549 kb on + strand at 1.557 kb on + strand at 1.557 kb on + strand at 1.565 kb on - strand at 1.566 kb on - strand at 1.587 kb on - strand at 1.625 kb on - strand at 1.627 kb on + strand at 1.635 kb on - strand at 1.637 kb on + strand at 1.639 kb on + strand at 1.650 kb on + strand at 1.650 kb on + strand at 1.650 kb on + strand at 1.650 kb on + strand at 1.650 kb on + strand at 1.650 kb on + strand at 1.650 kb on + strand at 1.650 kb on + strand at 1.650 kb on + strand at 1.650 kb on + strand at 1.650 kb on + strand at 1.650 kb on + strand at 1.653 kb on - strand at 1.655 kb on + strand at 1.655 kb on - strand at 1.655 kb on - strand at 1.658 kb on - strand at 1.658 kb on - strand at 1.658 kb on - strand at 1.658 kb on - strand at 1.658 kb on - strand at 1.671 kb on + strand at 1.671 kb on + strand at 1.671 kb on + strand at 1.671 kb on + strand at 1.671 kb on + strand at 1.672 kb on + strand at 1.679 kb on - strand at 1.679 kb on - strand at 1.679 kb on - strand at 1.680 kb on - strand at 1.700 kb on - strand at 1.702 kb on - strand at 1.705 kb on - strand at 1.705 kb on - strand at 1.711 kb on + strand at 1.714 kb on - strand at 1.714 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fumarate (C) remove 49 + +1.0 228 - Dshi_4067 0.27 +1.1 481 - Dshi_4067 0.64 +0.6 545 - Dshi_4067 0.73 -0.4 552 - Dshi_4067 0.74 +0.6 553 - Dshi_4067 0.74 +1.0 599 - Dshi_4067 0.81 +1.0 682 - -0.0 689 - +0.4 791 - +0.7 803 + +0.9 861 + +0.6 862 - +1.0 869 - +0.6 880 + +0.6 880 + +0.9 880 + +1.0 884 + +0.5 902 + +0.3 903 - +0.7 908 - +0.8 913 - +0.5 920 - +0.8 927 - -0.4 942 - +0.4 955 + +1.2 955 + +0.8 960 + +0.0 960 + +0.4 963 + +0.7 963 - +1.6 965 + +0.6 965 + +1.1 971 + +0.3 973 - +0.9 973 - -0.5 1,039 + -0.0 1,039 + -1.0 1,039 + -0.4 1,039 + -0.4 1,040 - +0.6 1,041 - +0.1 1,047 - -0.6 1,047 - +1.1 1,047 - +0.7 1,054 + +1.5 1,056 - +0.3 1,062 + +0.1 1,068 - +0.1 1,070 - +2.6 1,070 - -0.8 1,070 - +0.5 1,072 - +0.1 1,087 + +0.2 1,106 + +1.1 1,107 - +0.3 1,107 - -0.1 1,110 - +0.4 1,114 + -1.1 1,115 - +0.3 1,116 + +1.4 1,121 + +0.7 1,127 + +0.0 1,129 + +0.1 1,129 + +0.7 1,135 - +1.7 1,140 + +0.4 1,140 + +0.5 1,146 + +1.0 1,153 + +1.6 1,153 - -0.1 1,155 + +0.3 1,155 + -0.0 1,163 - +0.6 1,163 - -0.9 1,163 - +0.4 1,163 - -0.6 1,166 - +0.3 1,185 + +1.5 1,188 - +0.1 1,190 + +0.5 1,193 - -0.1 1,193 - -1.7 1,200 + +1.3 1,208 - +0.6 1,238 + +0.7 1,254 + -0.3 1,254 + +0.2 1,256 + +0.2 1,256 + +0.5 1,256 + +0.6 1,256 + -0.4 1,256 + +0.6 1,256 + +0.1 1,256 + -0.6 1,256 + +0.3 1,256 + -0.7 1,256 + +0.3 1,256 + +0.3 1,256 + +0.8 1,256 + +1.1 1,256 + +0.0 1,256 + -0.2 1,256 + +0.5 1,256 + -0.1 1,256 + +1.2 1,256 + -0.4 1,256 - +0.4 1,257 - -0.0 1,262 - +0.4 1,262 - +0.6 1,264 - -0.1 1,264 - +0.8 1,264 - +0.4 1,264 - +0.5 1,264 - +0.4 1,264 - +1.0 1,264 - +2.2 1,264 - -0.2 1,264 - +0.3 1,264 - +0.2 1,264 - +0.5 1,278 - +0.3 1,280 + -0.4 1,282 + -0.3 1,283 + +0.9 1,285 + -0.4 1,285 + +0.8 1,285 + +0.3 1,285 + -0.0 1,285 + +0.9 1,288 - +0.5 1,291 - +0.1 1,293 - +0.4 1,293 - -1.0 1,293 - +0.5 1,293 - +0.9 1,293 - -0.5 1,298 - +2.3 1,298 - +0.3 1,317 + +0.2 1,333 + +0.3 1,341 - +0.9 1,356 - +0.9 1,384 + -0.1 1,389 + -0.8 1,394 + +0.8 1,394 + -0.0 1,394 + +0.6 1,397 - -0.1 1,397 - -1.1 1,402 + +0.4 1,402 + +1.0 1,412 + -0.6 1,412 - +0.5 1,417 + +1.1 1,425 - -1.4 1,435 - +0.3 1,451 + -0.7 1,459 - -0.3 1,459 - +0.6 1,481 + +0.2 1,489 - -0.0 1,489 - +0.9 1,489 - +1.5 1,494 + -0.8 1,495 - -0.3 1,495 - -0.3 1,495 - -0.4 1,517 + -0.2 1,517 + +0.4 1,519 - +0.8 1,525 - +0.7 1,527 + +0.3 1,527 + +0.3 1,527 + -1.1 1,527 + -0.1 1,527 + +0.4 1,527 + +0.3 1,527 + +0.5 1,527 + -1.4 1,530 - +0.0 1,532 + +0.3 1,532 + +0.1 1,535 - -0.3 1,535 - +0.0 1,535 - -0.0 1,535 - +1.2 1,535 - +0.4 1,535 - -0.4 1,535 - -0.6 1,535 - +1.5 1,535 - +0.4 1,535 - -0.1 1,540 - +1.1 1,540 - +0.4 1,549 + +0.5 1,557 + +0.7 1,557 + -0.1 1,565 - +1.0 1,566 - +0.0 1,587 - +0.5 1,625 - +0.8 1,627 + -0.4 1,635 - -0.6 1,637 + +0.3 1,639 + -0.6 1,650 + -0.5 1,650 + +0.3 1,650 + -0.5 1,650 + +0.6 1,650 + -0.1 1,650 + +0.1 1,650 + +0.1 1,650 + -0.7 1,650 + +0.6 1,650 + -0.1 1,650 + +0.9 1,650 + -0.3 1,653 - -1.4 1,655 + +1.0 1,655 - +0.3 1,655 - +0.2 1,658 - +0.0 1,658 - +0.4 1,658 - +0.0 1,658 - -0.5 1,658 - +0.1 1,671 + -0.1 1,671 + -0.6 1,671 + +0.3 1,671 + -0.9 1,671 + +1.1 1,672 + +0.3 1,679 - +0.5 1,679 - -0.8 1,679 - -0.1 1,680 - -0.4 1,700 - +0.3 1,702 - -0.1 1,705 - -0.7 1,705 - -0.2 1,711 + +0.6 1,714 - -0.4 1,714 - -0.2
Or see this region's nucleotide sequence