Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0580

Experiment: Fumarate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0579 and Dshi_0580 are separated by 67 nucleotidesDshi_0580 and Dshi_0581 overlap by 4 nucleotidesDshi_0581 and Dshi_0582 are separated by 13 nucleotides Dshi_0579: Dshi_0579 - BCCT transporter (RefSeq), at 569,219 to 570,778 _0579 Dshi_0580: Dshi_0580 - hypothetical protein (RefSeq), at 570,846 to 572,522 _0580 Dshi_0581: Dshi_0581 - hypothetical protein (RefSeq), at 572,519 to 573,250 _0581 Dshi_0582: Dshi_0582 - Endoribonuclease L-PSP (RefSeq), at 573,264 to 573,629 _0582 Position (kb) 570 571 572 573Strain fitness (log2 ratio) -2 -1 0 1at 569.854 kb on - strand, within Dshi_0579at 569.864 kb on - strand, within Dshi_0579at 569.936 kb on - strand, within Dshi_0579at 569.951 kb on + strand, within Dshi_0579at 570.057 kb on + strand, within Dshi_0579at 570.067 kb on + strand, within Dshi_0579at 570.118 kb on + strand, within Dshi_0579at 570.121 kb on - strand, within Dshi_0579at 570.126 kb on - strand, within Dshi_0579at 570.194 kb on + strand, within Dshi_0579at 570.293 kb on + strand, within Dshi_0579at 570.305 kb on - strand, within Dshi_0579at 570.315 kb on - strand, within Dshi_0579at 570.315 kb on - strand, within Dshi_0579at 570.422 kb on - strand, within Dshi_0579at 570.451 kb on + strand, within Dshi_0579at 570.451 kb on + strand, within Dshi_0579at 570.454 kb on - strand, within Dshi_0579at 570.459 kb on - strand, within Dshi_0579at 570.459 kb on - strand, within Dshi_0579at 570.472 kb on - strand, within Dshi_0579at 570.494 kb on - strand, within Dshi_0579at 570.545 kb on - strandat 570.551 kb on + strand, within Dshi_0579at 570.571 kb on + strand, within Dshi_0579at 570.604 kb on - strand, within Dshi_0579at 570.659 kb on + strandat 570.667 kb on - strandat 570.756 kb on + strandat 570.773 kb on + strandat 570.800 kb on - strandat 570.917 kb on - strandat 570.987 kb on - strandat 571.077 kb on + strand, within Dshi_0580at 571.077 kb on + strand, within Dshi_0580at 571.084 kb on + strand, within Dshi_0580at 571.085 kb on - strand, within Dshi_0580at 571.159 kb on + strand, within Dshi_0580at 571.159 kb on + strand, within Dshi_0580at 571.166 kb on - strand, within Dshi_0580at 571.167 kb on - strand, within Dshi_0580at 571.167 kb on - strand, within Dshi_0580at 571.167 kb on - strand, within Dshi_0580at 571.167 kb on - strand, within Dshi_0580at 571.254 kb on - strand, within Dshi_0580at 571.254 kb on - strand, within Dshi_0580at 571.312 kb on - strand, within Dshi_0580at 571.316 kb on + strand, within Dshi_0580at 571.330 kb on + strand, within Dshi_0580at 571.338 kb on - strand, within Dshi_0580at 571.360 kb on + strand, within Dshi_0580at 571.474 kb on + strand, within Dshi_0580at 571.474 kb on + strand, within Dshi_0580at 571.566 kb on + strand, within Dshi_0580at 571.576 kb on + strand, within Dshi_0580at 571.576 kb on + strand, within Dshi_0580at 571.576 kb on + strand, within Dshi_0580at 571.576 kb on + strand, within Dshi_0580at 571.576 kb on + strand, within Dshi_0580at 571.584 kb on - strand, within Dshi_0580at 571.584 kb on - strand, within Dshi_0580at 571.584 kb on - strand, within Dshi_0580at 571.606 kb on + strand, within Dshi_0580at 571.670 kb on + strand, within Dshi_0580at 571.717 kb on + strand, within Dshi_0580at 571.742 kb on - strand, within Dshi_0580at 571.838 kb on + strand, within Dshi_0580at 571.877 kb on - strand, within Dshi_0580at 571.883 kb on + strand, within Dshi_0580at 571.889 kb on + strand, within Dshi_0580at 571.928 kb on - strand, within Dshi_0580at 571.928 kb on - strand, within Dshi_0580at 571.938 kb on - strand, within Dshi_0580at 571.952 kb on + strand, within Dshi_0580at 572.043 kb on + strand, within Dshi_0580at 572.053 kb on - strand, within Dshi_0580at 572.063 kb on - strand, within Dshi_0580at 572.103 kb on + strand, within Dshi_0580at 572.128 kb on - strand, within Dshi_0580at 572.293 kb on - strand, within Dshi_0580at 572.328 kb on + strand, within Dshi_0580at 572.328 kb on + strand, within Dshi_0580at 572.339 kb on + strand, within Dshi_0580at 572.341 kb on - strand, within Dshi_0580at 572.347 kb on - strand, within Dshi_0580at 572.401 kb on + strandat 572.461 kb on + strandat 572.488 kb on + strandat 572.570 kb on + strandat 572.599 kb on - strand, within Dshi_0581at 572.664 kb on + strand, within Dshi_0581at 572.746 kb on - strand, within Dshi_0581at 572.746 kb on - strand, within Dshi_0581at 572.774 kb on - strand, within Dshi_0581at 572.838 kb on + strand, within Dshi_0581at 572.912 kb on - strand, within Dshi_0581at 572.912 kb on - strand, within Dshi_0581at 572.922 kb on - strand, within Dshi_0581at 572.934 kb on - strand, within Dshi_0581at 572.970 kb on + strand, within Dshi_0581at 573.004 kb on + strand, within Dshi_0581at 573.026 kb on - strand, within Dshi_0581at 573.053 kb on + strand, within Dshi_0581at 573.169 kb on - strand, within Dshi_0581at 573.233 kb on - strandat 573.233 kb on - strandat 573.233 kb on - strandat 573.302 kb on - strand, within Dshi_0582at 573.306 kb on + strand, within Dshi_0582at 573.339 kb on + strand, within Dshi_0582at 573.339 kb on + strand, within Dshi_0582at 573.382 kb on + strand, within Dshi_0582at 573.490 kb on - strand, within Dshi_0582

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Per-strain Table

Position Strand Gene LocusTag Fraction Fumarate (C)
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569,854 - Dshi_0579 0.41 -0.5
569,864 - Dshi_0579 0.41 -0.1
569,936 - Dshi_0579 0.46 -0.0
569,951 + Dshi_0579 0.47 -0.1
570,057 + Dshi_0579 0.54 +1.0
570,067 + Dshi_0579 0.54 -0.1
570,118 + Dshi_0579 0.58 +0.8
570,121 - Dshi_0579 0.58 -0.7
570,126 - Dshi_0579 0.58 +0.9
570,194 + Dshi_0579 0.62 -0.5
570,293 + Dshi_0579 0.69 +0.2
570,305 - Dshi_0579 0.70 +0.2
570,315 - Dshi_0579 0.70 -0.5
570,315 - Dshi_0579 0.70 -0.4
570,422 - Dshi_0579 0.77 -0.3
570,451 + Dshi_0579 0.79 +0.4
570,451 + Dshi_0579 0.79 -0.2
570,454 - Dshi_0579 0.79 +0.3
570,459 - Dshi_0579 0.79 -0.8
570,459 - Dshi_0579 0.79 +0.7
570,472 - Dshi_0579 0.80 +0.3
570,494 - Dshi_0579 0.82 -0.1
570,545 - +0.6
570,551 + Dshi_0579 0.85 -0.8
570,571 + Dshi_0579 0.87 +0.6
570,604 - Dshi_0579 0.89 +0.1
570,659 + -1.8
570,667 - -0.3
570,756 + +0.2
570,773 + -0.1
570,800 - -1.1
570,917 - -0.5
570,987 - +0.3
571,077 + Dshi_0580 0.14 +0.5
571,077 + Dshi_0580 0.14 -0.3
571,084 + Dshi_0580 0.14 -0.2
571,085 - Dshi_0580 0.14 -0.3
571,159 + Dshi_0580 0.19 +0.3
571,159 + Dshi_0580 0.19 -0.1
571,166 - Dshi_0580 0.19 -0.5
571,167 - Dshi_0580 0.19 -0.7
571,167 - Dshi_0580 0.19 -1.0
571,167 - Dshi_0580 0.19 -0.1
571,167 - Dshi_0580 0.19 -0.0
571,254 - Dshi_0580 0.24 +0.0
571,254 - Dshi_0580 0.24 -1.0
571,312 - Dshi_0580 0.28 -0.2
571,316 + Dshi_0580 0.28 -0.8
571,330 + Dshi_0580 0.29 -0.5
571,338 - Dshi_0580 0.29 -1.1
571,360 + Dshi_0580 0.31 -0.5
571,474 + Dshi_0580 0.37 -0.6
571,474 + Dshi_0580 0.37 +1.2
571,566 + Dshi_0580 0.43 -0.7
571,576 + Dshi_0580 0.44 -0.6
571,576 + Dshi_0580 0.44 +0.6
571,576 + Dshi_0580 0.44 -1.0
571,576 + Dshi_0580 0.44 -2.0
571,576 + Dshi_0580 0.44 +0.5
571,584 - Dshi_0580 0.44 -0.7
571,584 - Dshi_0580 0.44 -0.1
571,584 - Dshi_0580 0.44 +0.3
571,606 + Dshi_0580 0.45 -1.4
571,670 + Dshi_0580 0.49 -1.0
571,717 + Dshi_0580 0.52 -1.1
571,742 - Dshi_0580 0.53 +0.3
571,838 + Dshi_0580 0.59 +0.2
571,877 - Dshi_0580 0.61 -0.0
571,883 + Dshi_0580 0.62 -0.1
571,889 + Dshi_0580 0.62 -0.2
571,928 - Dshi_0580 0.65 -0.9
571,928 - Dshi_0580 0.65 +1.2
571,938 - Dshi_0580 0.65 -0.6
571,952 + Dshi_0580 0.66 -1.0
572,043 + Dshi_0580 0.71 -0.3
572,053 - Dshi_0580 0.72 +0.1
572,063 - Dshi_0580 0.73 -0.1
572,103 + Dshi_0580 0.75 +0.3
572,128 - Dshi_0580 0.76 -0.7
572,293 - Dshi_0580 0.86 +0.2
572,328 + Dshi_0580 0.88 -0.5
572,328 + Dshi_0580 0.88 +0.4
572,339 + Dshi_0580 0.89 +0.3
572,341 - Dshi_0580 0.89 +0.1
572,347 - Dshi_0580 0.90 +0.4
572,401 + -0.6
572,461 + -0.9
572,488 + -0.2
572,570 + +0.5
572,599 - Dshi_0581 0.11 -0.9
572,664 + Dshi_0581 0.20 +0.5
572,746 - Dshi_0581 0.31 -0.1
572,746 - Dshi_0581 0.31 -0.7
572,774 - Dshi_0581 0.35 +1.1
572,838 + Dshi_0581 0.44 -0.4
572,912 - Dshi_0581 0.54 +0.6
572,912 - Dshi_0581 0.54 -0.4
572,922 - Dshi_0581 0.55 -1.0
572,934 - Dshi_0581 0.57 +0.8
572,970 + Dshi_0581 0.62 +0.1
573,004 + Dshi_0581 0.66 +1.1
573,026 - Dshi_0581 0.69 +0.6
573,053 + Dshi_0581 0.73 +1.6
573,169 - Dshi_0581 0.89 +0.5
573,233 - +0.6
573,233 - +0.6
573,233 - -0.2
573,302 - Dshi_0582 0.10 -0.1
573,306 + Dshi_0582 0.11 +0.0
573,339 + Dshi_0582 0.20 -0.2
573,339 + Dshi_0582 0.20 -2.0
573,382 + Dshi_0582 0.32 +0.5
573,490 - Dshi_0582 0.62 +0.1

Or see this region's nucleotide sequence