Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0572

Experiment: Fumarate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0570 and Dshi_0571 are separated by 45 nucleotidesDshi_0571 and Dshi_0572 overlap by 4 nucleotidesDshi_0572 and Dshi_0573 overlap by 11 nucleotidesDshi_0573 and Dshi_0574 overlap by 4 nucleotides Dshi_0570: Dshi_0570 - TonB-dependent receptor (RefSeq), at 558,999 to 561,026 _0570 Dshi_0571: Dshi_0571 - ABC transporter related (RefSeq), at 561,072 to 561,854 _0571 Dshi_0572: Dshi_0572 - transport system permease protein (RefSeq), at 561,851 to 562,933 _0572 Dshi_0573: Dshi_0573 - periplasmic binding protein (RefSeq), at 562,923 to 563,759 _0573 Dshi_0574: Dshi_0574 - Haemin-degrading family protein (RefSeq), at 563,756 to 564,787 _0574 Position (kb) 561 562 563Strain fitness (log2 ratio) -2 -1 0 1at 560.869 kb on + strandat 560.956 kb on + strandat 560.956 kb on + strandat 560.975 kb on + strandat 561.019 kb on - strandat 561.069 kb on - strandat 561.070 kb on + strandat 561.070 kb on + strandat 561.085 kb on + strandat 561.085 kb on + strandat 561.129 kb on + strandat 561.144 kb on + strandat 561.144 kb on + strandat 561.144 kb on + strandat 561.151 kb on + strand, within Dshi_0571at 561.151 kb on + strand, within Dshi_0571at 561.152 kb on - strand, within Dshi_0571at 561.160 kb on - strand, within Dshi_0571at 561.161 kb on + strand, within Dshi_0571at 561.171 kb on + strand, within Dshi_0571at 561.222 kb on - strand, within Dshi_0571at 561.356 kb on - strand, within Dshi_0571at 561.391 kb on + strand, within Dshi_0571at 561.499 kb on + strand, within Dshi_0571at 561.524 kb on + strand, within Dshi_0571at 561.527 kb on - strand, within Dshi_0571at 561.532 kb on - strand, within Dshi_0571at 561.645 kb on + strand, within Dshi_0571at 561.645 kb on + strand, within Dshi_0571at 561.649 kb on - strand, within Dshi_0571at 561.737 kb on - strand, within Dshi_0571at 561.742 kb on - strand, within Dshi_0571at 561.821 kb on + strandat 561.829 kb on - strandat 561.885 kb on + strandat 561.965 kb on - strand, within Dshi_0572at 562.069 kb on - strand, within Dshi_0572at 562.135 kb on + strand, within Dshi_0572at 562.146 kb on + strand, within Dshi_0572at 562.154 kb on - strand, within Dshi_0572at 562.164 kb on - strand, within Dshi_0572at 562.180 kb on - strand, within Dshi_0572at 562.201 kb on - strand, within Dshi_0572at 562.284 kb on - strand, within Dshi_0572at 562.309 kb on + strand, within Dshi_0572at 562.358 kb on - strand, within Dshi_0572at 562.365 kb on - strand, within Dshi_0572at 562.409 kb on + strand, within Dshi_0572at 562.497 kb on + strand, within Dshi_0572at 562.587 kb on - strand, within Dshi_0572at 562.781 kb on + strand, within Dshi_0572at 562.783 kb on + strand, within Dshi_0572at 562.783 kb on + strand, within Dshi_0572at 562.783 kb on + strand, within Dshi_0572at 562.784 kb on - strand, within Dshi_0572at 562.791 kb on - strand, within Dshi_0572at 562.791 kb on - strand, within Dshi_0572at 562.907 kb on + strandat 562.921 kb on + strandat 562.969 kb on - strandat 562.976 kb on + strandat 563.015 kb on + strand, within Dshi_0573at 563.022 kb on + strand, within Dshi_0573at 563.053 kb on + strand, within Dshi_0573at 563.111 kb on + strand, within Dshi_0573at 563.156 kb on - strand, within Dshi_0573at 563.181 kb on + strand, within Dshi_0573at 563.489 kb on + strand, within Dshi_0573at 563.604 kb on + strand, within Dshi_0573at 563.613 kb on - strand, within Dshi_0573at 563.663 kb on - strand, within Dshi_0573at 563.690 kb on + strandat 563.719 kb on - strandat 563.761 kb on - strandat 563.812 kb on + strandat 563.824 kb on - strandat 563.922 kb on + strand, within Dshi_0574at 563.927 kb on + strand, within Dshi_0574

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Per-strain Table

Position Strand Gene LocusTag Fraction Fumarate (C)
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560,869 + -0.4
560,956 + -0.4
560,956 + +0.1
560,975 + -0.3
561,019 - +0.6
561,069 - +0.1
561,070 + +0.0
561,070 + +0.8
561,085 + -0.5
561,085 + -1.1
561,129 + -0.7
561,144 + +0.5
561,144 + -0.3
561,144 + -0.1
561,151 + Dshi_0571 0.10 +0.1
561,151 + Dshi_0571 0.10 +0.3
561,152 - Dshi_0571 0.10 -1.4
561,160 - Dshi_0571 0.11 -0.4
561,161 + Dshi_0571 0.11 -0.8
561,171 + Dshi_0571 0.13 -1.4
561,222 - Dshi_0571 0.19 +0.4
561,356 - Dshi_0571 0.36 -0.7
561,391 + Dshi_0571 0.41 -0.0
561,499 + Dshi_0571 0.55 -1.8
561,524 + Dshi_0571 0.58 -1.0
561,527 - Dshi_0571 0.58 -0.6
561,532 - Dshi_0571 0.59 -0.8
561,645 + Dshi_0571 0.73 -0.0
561,645 + Dshi_0571 0.73 -0.7
561,649 - Dshi_0571 0.74 -1.8
561,737 - Dshi_0571 0.85 -0.8
561,742 - Dshi_0571 0.86 -0.9
561,821 + -0.8
561,829 - -1.6
561,885 + -0.9
561,965 - Dshi_0572 0.11 +0.2
562,069 - Dshi_0572 0.20 -1.0
562,135 + Dshi_0572 0.26 -0.5
562,146 + Dshi_0572 0.27 -1.1
562,154 - Dshi_0572 0.28 -0.5
562,164 - Dshi_0572 0.29 -0.4
562,180 - Dshi_0572 0.30 -1.1
562,201 - Dshi_0572 0.32 +0.0
562,284 - Dshi_0572 0.40 -0.5
562,309 + Dshi_0572 0.42 -0.5
562,358 - Dshi_0572 0.47 -1.0
562,365 - Dshi_0572 0.47 +0.3
562,409 + Dshi_0572 0.52 -0.4
562,497 + Dshi_0572 0.60 -0.5
562,587 - Dshi_0572 0.68 -0.8
562,781 + Dshi_0572 0.86 -0.9
562,783 + Dshi_0572 0.86 +0.4
562,783 + Dshi_0572 0.86 +0.2
562,783 + Dshi_0572 0.86 -0.9
562,784 - Dshi_0572 0.86 +0.0
562,791 - Dshi_0572 0.87 +0.1
562,791 - Dshi_0572 0.87 -1.2
562,907 + -2.6
562,921 + +0.2
562,969 - -0.8
562,976 + -0.6
563,015 + Dshi_0573 0.11 -0.2
563,022 + Dshi_0573 0.12 -0.7
563,053 + Dshi_0573 0.16 +0.7
563,111 + Dshi_0573 0.22 +0.8
563,156 - Dshi_0573 0.28 -0.1
563,181 + Dshi_0573 0.31 -1.0
563,489 + Dshi_0573 0.68 -0.3
563,604 + Dshi_0573 0.81 -0.0
563,613 - Dshi_0573 0.82 -0.5
563,663 - Dshi_0573 0.88 -0.4
563,690 + -1.3
563,719 - -0.4
563,761 - +0.3
563,812 + -1.0
563,824 - -1.1
563,922 + Dshi_0574 0.16 -0.6
563,927 + Dshi_0574 0.17 -0.5

Or see this region's nucleotide sequence