Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_963 and HP15_964 are separated by 83 nucleotides HP15_964 and HP15_965 are separated by 102 nucleotides HP15_965 and HP15_966 are separated by 66 nucleotides HP15_966 and HP15_967 are separated by 448 nucleotides
HP15_963: HP15_963 - conserved hypothetical protein, at 978,341 to 978,550
_963
HP15_964: HP15_964 - conserved hypothetical protein, at 978,634 to 979,386
_964
HP15_965: HP15_965 - hypothetical protein, at 979,489 to 979,923
_965
HP15_966: HP15_966 - ABC transporter related protein, at 979,990 to 980,289
_966
HP15_967: HP15_967 - hypothetical protein, at 980,738 to 981,184
_967
Position (kb) 979
980 Strain fitness (log2 ratio) -1
0
1 at 978.509 kb on - strand, within HP15_963 at 978.613 kb on + strand at 978.863 kb on + strand, within HP15_964 at 978.890 kb on + strand, within HP15_964 at 978.955 kb on + strand, within HP15_964 at 979.120 kb on + strand, within HP15_964 at 979.151 kb on - strand, within HP15_964 at 979.182 kb on + strand, within HP15_964 at 979.230 kb on - strand, within HP15_964 at 979.438 kb on - strand at 979.517 kb on - strand at 979.525 kb on + strand at 979.537 kb on + strand, within HP15_965 at 979.557 kb on + strand, within HP15_965 at 979.597 kb on + strand, within HP15_965 at 979.605 kb on - strand, within HP15_965 at 979.658 kb on - strand, within HP15_965 at 979.725 kb on - strand, within HP15_965 at 979.808 kb on + strand, within HP15_965 at 979.821 kb on - strand, within HP15_965 at 979.935 kb on - strand at 980.176 kb on - strand, within HP15_966 at 980.177 kb on + strand, within HP15_966 at 980.185 kb on - strand, within HP15_966 at 980.371 kb on + strand at 980.371 kb on + strand at 980.421 kb on - strand at 980.421 kb on - strand at 980.458 kb on + strand at 980.491 kb on + strand at 980.585 kb on + strand at 980.590 kb on - strand at 980.614 kb on - strand at 980.824 kb on + strand, within HP15_967 at 980.855 kb on + strand, within HP15_967 at 980.869 kb on + strand, within HP15_967 at 980.869 kb on + strand, within HP15_967 at 980.869 kb on + strand, within HP15_967 at 980.869 kb on + strand, within HP15_967 at 980.869 kb on + strand, within HP15_967 at 980.877 kb on - strand, within HP15_967 at 980.877 kb on - strand, within HP15_967 at 980.877 kb on - strand, within HP15_967 at 980.877 kb on - strand, within HP15_967 at 980.894 kb on - strand, within HP15_967 at 980.902 kb on + strand, within HP15_967 at 980.906 kb on + strand, within HP15_967 at 980.914 kb on - strand, within HP15_967
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 978,509 - HP15_963 0.80 -0.7 978,613 + -1.3 978,863 + HP15_964 0.30 +0.6 978,890 + HP15_964 0.34 -1.2 978,955 + HP15_964 0.43 -0.1 979,120 + HP15_964 0.65 -0.9 979,151 - HP15_964 0.69 +0.4 979,182 + HP15_964 0.73 +0.4 979,230 - HP15_964 0.79 -0.0 979,438 - +0.4 979,517 - +0.0 979,525 + -0.9 979,537 + HP15_965 0.11 +0.3 979,557 + HP15_965 0.16 -0.2 979,597 + HP15_965 0.25 +0.2 979,605 - HP15_965 0.27 +0.3 979,658 - HP15_965 0.39 +0.7 979,725 - HP15_965 0.54 -0.3 979,808 + HP15_965 0.73 +0.1 979,821 - HP15_965 0.76 -0.3 979,935 - -1.3 980,176 - HP15_966 0.62 -0.7 980,177 + HP15_966 0.62 -0.9 980,185 - HP15_966 0.65 -0.3 980,371 + +0.4 980,371 + -0.8 980,421 - -0.6 980,421 - +1.1 980,458 + +0.3 980,491 + -0.6 980,585 + -0.1 980,590 - +0.5 980,614 - -1.4 980,824 + HP15_967 0.19 -0.4 980,855 + HP15_967 0.26 -0.3 980,869 + HP15_967 0.29 -0.3 980,869 + HP15_967 0.29 -0.7 980,869 + HP15_967 0.29 -1.0 980,869 + HP15_967 0.29 +0.7 980,869 + HP15_967 0.29 -0.4 980,877 - HP15_967 0.31 +0.3 980,877 - HP15_967 0.31 +1.1 980,877 - HP15_967 0.31 -0.5 980,877 - HP15_967 0.31 -0.8 980,894 - HP15_967 0.35 -1.4 980,902 + HP15_967 0.37 -0.8 980,906 + HP15_967 0.38 +1.6 980,914 - HP15_967 0.39 -0.2
Or see this region's nucleotide sequence