Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_962 and HP15_963 are separated by 208 nucleotides HP15_963 and HP15_964 are separated by 83 nucleotides
HP15_962: HP15_962 - orf153EGC121-like protein, at 977,827 to 978,132
_962
HP15_963: HP15_963 - conserved hypothetical protein, at 978,341 to 978,550
_963
HP15_964: HP15_964 - conserved hypothetical protein, at 978,634 to 979,386
_964
Position (kb) 977
978
979 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 976.832 kb on - strand at 976.856 kb on + strand at 976.864 kb on - strand at 976.871 kb on - strand at 976.876 kb on - strand at 976.896 kb on - strand at 976.925 kb on + strand at 976.925 kb on + strand at 977.011 kb on - strand at 977.033 kb on + strand at 977.033 kb on + strand at 977.033 kb on + strand at 977.033 kb on + strand at 977.033 kb on + strand at 977.033 kb on + strand at 977.033 kb on + strand at 977.033 kb on + strand at 977.041 kb on - strand at 977.041 kb on - strand at 977.041 kb on - strand at 977.048 kb on + strand at 977.084 kb on + strand at 977.092 kb on - strand at 977.106 kb on + strand at 977.198 kb on - strand at 977.224 kb on + strand at 977.296 kb on + strand at 977.332 kb on + strand at 977.377 kb on + strand at 977.715 kb on + strand at 977.723 kb on - strand at 977.777 kb on + strand at 977.777 kb on + strand at 977.785 kb on - strand at 977.792 kb on - strand at 977.840 kb on - strand at 977.900 kb on - strand, within HP15_962 at 977.905 kb on - strand, within HP15_962 at 977.915 kb on - strand, within HP15_962 at 977.964 kb on + strand, within HP15_962 at 978.028 kb on + strand, within HP15_962 at 978.028 kb on + strand, within HP15_962 at 978.029 kb on - strand, within HP15_962 at 978.029 kb on - strand, within HP15_962 at 978.036 kb on - strand, within HP15_962 at 978.074 kb on + strand, within HP15_962 at 978.215 kb on + strand at 978.358 kb on + strand at 978.400 kb on + strand, within HP15_963 at 978.467 kb on + strand, within HP15_963 at 978.467 kb on + strand, within HP15_963 at 978.467 kb on + strand, within HP15_963 at 978.475 kb on - strand, within HP15_963 at 978.475 kb on - strand, within HP15_963 at 978.475 kb on - strand, within HP15_963 at 978.475 kb on - strand, within HP15_963 at 978.475 kb on - strand, within HP15_963 at 978.475 kb on - strand, within HP15_963 at 978.485 kb on - strand, within HP15_963 at 978.509 kb on - strand, within HP15_963 at 978.613 kb on + strand at 978.863 kb on + strand, within HP15_964 at 978.890 kb on + strand, within HP15_964 at 978.955 kb on + strand, within HP15_964 at 979.120 kb on + strand, within HP15_964
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 976,832 - +0.7 976,856 + +0.1 976,864 - +1.0 976,871 - +0.4 976,876 - +0.4 976,896 - -0.4 976,925 + -0.0 976,925 + -0.7 977,011 - +0.5 977,033 + -0.6 977,033 + +1.1 977,033 + +0.0 977,033 + +0.1 977,033 + +0.5 977,033 + -0.4 977,033 + -0.2 977,033 + +0.2 977,041 - +0.2 977,041 - -0.3 977,041 - -1.8 977,048 + +0.9 977,084 + -0.6 977,092 - +0.0 977,106 + +0.7 977,198 - +0.1 977,224 + +0.7 977,296 + -0.7 977,332 + -1.3 977,377 + -0.4 977,715 + -0.7 977,723 - -1.2 977,777 + +3.2 977,777 + +0.0 977,785 - +0.4 977,792 - -0.1 977,840 - -1.6 977,900 - HP15_962 0.24 -0.8 977,905 - HP15_962 0.25 -0.5 977,915 - HP15_962 0.29 -0.5 977,964 + HP15_962 0.45 +0.5 978,028 + HP15_962 0.66 -1.5 978,028 + HP15_962 0.66 -0.8 978,029 - HP15_962 0.66 -0.6 978,029 - HP15_962 0.66 +0.4 978,036 - HP15_962 0.68 -0.3 978,074 + HP15_962 0.81 -1.0 978,215 + -1.0 978,358 + +0.1 978,400 + HP15_963 0.28 +0.4 978,467 + HP15_963 0.60 -0.2 978,467 + HP15_963 0.60 -1.0 978,467 + HP15_963 0.60 +0.4 978,475 - HP15_963 0.64 -1.4 978,475 - HP15_963 0.64 +0.7 978,475 - HP15_963 0.64 -1.5 978,475 - HP15_963 0.64 +0.9 978,475 - HP15_963 0.64 -0.1 978,475 - HP15_963 0.64 +0.4 978,485 - HP15_963 0.69 -0.5 978,509 - HP15_963 0.80 -0.7 978,613 + -1.3 978,863 + HP15_964 0.30 +0.6 978,890 + HP15_964 0.34 -1.2 978,955 + HP15_964 0.43 -0.1 979,120 + HP15_964 0.65 -0.9
Or see this region's nucleotide sequence