Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_940 and HP15_941 are separated by 302 nucleotides HP15_941 and HP15_942 are separated by 255 nucleotides HP15_942 and HP15_943 are separated by 75 nucleotides
HP15_940: HP15_940 - putrescine ABC transporter, periplasmic putrescine-binding protein, at 955,039 to 956,145
_940
HP15_941: HP15_941 - conserved hypothetical protein, secreted, at 956,448 to 956,774
_941
HP15_942: HP15_942 - glutamate-putrescine ligase, at 957,030 to 958,394
_942
HP15_943: HP15_943 - aldehyde dehydrogenase family protein, at 958,470 to 959,987
_943
Position (kb) 957
958
959 Strain fitness (log2 ratio) -1
0
1 at 956.100 kb on + strand at 956.101 kb on + strand at 956.108 kb on - strand at 956.134 kb on - strand at 956.201 kb on + strand at 956.201 kb on + strand at 956.206 kb on + strand at 956.206 kb on + strand at 956.211 kb on + strand at 956.214 kb on - strand at 956.214 kb on - strand at 956.219 kb on - strand at 956.237 kb on + strand at 956.260 kb on - strand at 956.273 kb on - strand at 956.284 kb on - strand at 956.310 kb on - strand at 956.422 kb on - strand at 956.465 kb on + strand at 956.571 kb on + strand, within HP15_941 at 956.574 kb on - strand, within HP15_941 at 956.574 kb on - strand, within HP15_941 at 956.624 kb on + strand, within HP15_941 at 956.671 kb on - strand, within HP15_941 at 956.730 kb on + strand, within HP15_941 at 956.873 kb on + strand at 956.956 kb on + strand at 956.956 kb on + strand at 956.968 kb on + strand at 956.976 kb on - strand at 957.256 kb on - strand, within HP15_942 at 957.298 kb on + strand, within HP15_942 at 957.306 kb on - strand, within HP15_942 at 957.468 kb on - strand, within HP15_942 at 957.548 kb on + strand, within HP15_942 at 957.607 kb on + strand, within HP15_942 at 957.683 kb on - strand, within HP15_942 at 957.750 kb on + strand, within HP15_942 at 957.813 kb on + strand, within HP15_942 at 957.843 kb on + strand, within HP15_942 at 957.881 kb on + strand, within HP15_942 at 957.950 kb on - strand, within HP15_942 at 958.165 kb on + strand, within HP15_942 at 958.173 kb on - strand, within HP15_942 at 958.173 kb on - strand, within HP15_942 at 958.184 kb on - strand, within HP15_942 at 958.221 kb on - strand, within HP15_942 at 958.462 kb on + strand at 958.462 kb on + strand at 958.551 kb on - strand at 958.634 kb on - strand, within HP15_943 at 958.796 kb on - strand, within HP15_943 at 958.807 kb on + strand, within HP15_943 at 959.070 kb on + strand, within HP15_943 at 959.208 kb on - strand, within HP15_943 at 959.261 kb on - strand, within HP15_943 at 959.341 kb on + strand, within HP15_943 at 959.349 kb on - strand, within HP15_943 at 959.360 kb on + strand, within HP15_943
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 956,100 + -0.3 956,101 + -0.5 956,108 - +0.0 956,134 - +0.5 956,201 + +0.4 956,201 + -0.2 956,206 + +1.0 956,206 + -0.5 956,211 + +0.9 956,214 - +0.4 956,214 - +0.5 956,219 - -1.2 956,237 + -0.5 956,260 - +0.7 956,273 - -0.4 956,284 - +0.6 956,310 - -0.6 956,422 - +1.6 956,465 + -0.1 956,571 + HP15_941 0.38 -0.8 956,574 - HP15_941 0.39 +1.2 956,574 - HP15_941 0.39 -1.3 956,624 + HP15_941 0.54 +0.2 956,671 - HP15_941 0.68 -0.1 956,730 + HP15_941 0.86 -0.2 956,873 + -0.5 956,956 + -0.2 956,956 + -0.7 956,968 + +0.7 956,976 - -0.1 957,256 - HP15_942 0.17 -0.8 957,298 + HP15_942 0.20 -0.8 957,306 - HP15_942 0.20 -0.6 957,468 - HP15_942 0.32 +0.0 957,548 + HP15_942 0.38 -0.8 957,607 + HP15_942 0.42 +0.0 957,683 - HP15_942 0.48 -0.3 957,750 + HP15_942 0.53 +0.3 957,813 + HP15_942 0.57 +0.8 957,843 + HP15_942 0.60 -0.4 957,881 + HP15_942 0.62 +0.2 957,950 - HP15_942 0.67 -0.9 958,165 + HP15_942 0.83 -0.5 958,173 - HP15_942 0.84 +1.1 958,173 - HP15_942 0.84 -0.7 958,184 - HP15_942 0.85 -1.3 958,221 - HP15_942 0.87 +0.7 958,462 + +0.6 958,462 + -1.1 958,551 - -0.8 958,634 - HP15_943 0.11 -0.5 958,796 - HP15_943 0.21 -0.2 958,807 + HP15_943 0.22 -1.1 959,070 + HP15_943 0.40 +0.2 959,208 - HP15_943 0.49 -0.4 959,261 - HP15_943 0.52 +1.3 959,341 + HP15_943 0.57 +0.0 959,349 - HP15_943 0.58 -0.4 959,360 + HP15_943 0.59 -0.6
Or see this region's nucleotide sequence