Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_909 and HP15_910 are separated by 27 nucleotides HP15_910 and HP15_911 are separated by 3 nucleotides HP15_911 and HP15_912 are separated by 132 nucleotides
HP15_909: HP15_909 - enoyl-CoA hydratase/isomerase family protein, at 921,160 to 922,230
_909
HP15_910: HP15_910 - 3-hydroxyisobutyrate dehydrogenase, at 922,258 to 923,145
_910
HP15_911: HP15_911 - conserved hypothetical protein, at 923,149 to 923,481
_911
HP15_912: HP15_912 - type VI secretion system Vgr family protein, at 923,614 to 925,734
_912
Position (kb) 922
923
924 Strain fitness (log2 ratio) -1
0
1 at 921.297 kb on + strand, within HP15_909 at 921.385 kb on - strand, within HP15_909 at 921.390 kb on - strand, within HP15_909 at 921.511 kb on + strand, within HP15_909 at 921.616 kb on - strand, within HP15_909 at 921.688 kb on - strand, within HP15_909 at 921.761 kb on + strand, within HP15_909 at 921.818 kb on - strand, within HP15_909 at 921.818 kb on - strand, within HP15_909 at 921.818 kb on - strand, within HP15_909 at 921.925 kb on - strand, within HP15_909 at 921.925 kb on - strand, within HP15_909 at 921.949 kb on - strand, within HP15_909 at 922.353 kb on + strand, within HP15_910 at 922.496 kb on - strand, within HP15_910 at 922.647 kb on - strand, within HP15_910 at 922.673 kb on + strand, within HP15_910 at 922.940 kb on - strand, within HP15_910 at 922.996 kb on + strand, within HP15_910 at 923.078 kb on - strand at 923.089 kb on - strand at 923.100 kb on - strand at 923.130 kb on + strand at 923.130 kb on + strand at 923.263 kb on + strand, within HP15_911 at 923.265 kb on + strand, within HP15_911 at 923.325 kb on - strand, within HP15_911 at 923.367 kb on + strand, within HP15_911 at 923.408 kb on + strand, within HP15_911 at 923.414 kb on - strand, within HP15_911 at 923.458 kb on - strand at 923.490 kb on - strand at 923.734 kb on + strand at 923.747 kb on - strand at 923.747 kb on - strand at 923.747 kb on - strand at 923.752 kb on - strand at 923.812 kb on - strand at 923.961 kb on - strand, within HP15_912 at 924.032 kb on + strand, within HP15_912 at 924.093 kb on + strand, within HP15_912 at 924.106 kb on - strand, within HP15_912 at 924.108 kb on - strand, within HP15_912 at 924.108 kb on - strand, within HP15_912 at 924.130 kb on - strand, within HP15_912
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 921,297 + HP15_909 0.13 +1.6 921,385 - HP15_909 0.21 +0.3 921,390 - HP15_909 0.21 -0.9 921,511 + HP15_909 0.33 +0.4 921,616 - HP15_909 0.43 -0.0 921,688 - HP15_909 0.49 +0.5 921,761 + HP15_909 0.56 +0.2 921,818 - HP15_909 0.61 +0.6 921,818 - HP15_909 0.61 +1.0 921,818 - HP15_909 0.61 -0.0 921,925 - HP15_909 0.71 -1.5 921,925 - HP15_909 0.71 -0.8 921,949 - HP15_909 0.74 -0.4 922,353 + HP15_910 0.11 -0.1 922,496 - HP15_910 0.27 +1.2 922,647 - HP15_910 0.44 -0.3 922,673 + HP15_910 0.47 +0.2 922,940 - HP15_910 0.77 -1.2 922,996 + HP15_910 0.83 -0.4 923,078 - +0.4 923,089 - +0.5 923,100 - +0.9 923,130 + +0.1 923,130 + -0.7 923,263 + HP15_911 0.34 -0.5 923,265 + HP15_911 0.35 +0.4 923,325 - HP15_911 0.53 +0.2 923,367 + HP15_911 0.65 +0.8 923,408 + HP15_911 0.78 +0.8 923,414 - HP15_911 0.80 -1.6 923,458 - -0.3 923,490 - -1.2 923,734 + -0.8 923,747 - -0.6 923,747 - -0.3 923,747 - -0.4 923,752 - +0.4 923,812 - +0.8 923,961 - HP15_912 0.16 +0.1 924,032 + HP15_912 0.20 +0.6 924,093 + HP15_912 0.23 -0.4 924,106 - HP15_912 0.23 -0.6 924,108 - HP15_912 0.23 -0.0 924,108 - HP15_912 0.23 +0.2 924,130 - HP15_912 0.24 -0.4
Or see this region's nucleotide sequence