Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_906 and HP15_907 are separated by 93 nucleotides HP15_907 and HP15_908 are separated by 62 nucleotides HP15_908 and HP15_909 are separated by 33 nucleotides
HP15_906: HP15_906 - methylmalonate-semialdehyde dehydrogenase, at 917,531 to 919,024
_906
HP15_907: HP15_907 - acyl-CoA dehydrogenase domain protein, at 919,118 to 920,284
_907
HP15_908: HP15_908 - enoyl-CoA hydratase/isomerase, at 920,347 to 921,126
_908
HP15_909: HP15_909 - enoyl-CoA hydratase/isomerase family protein, at 921,160 to 922,230
_909
Position (kb) 919
920
921 Strain fitness (log2 ratio) -2
-1
0
1 at 918.120 kb on - strand, within HP15_906 at 918.273 kb on - strand, within HP15_906 at 918.362 kb on + strand, within HP15_906 at 918.407 kb on + strand, within HP15_906 at 918.499 kb on - strand, within HP15_906 at 918.543 kb on + strand, within HP15_906 at 918.587 kb on + strand, within HP15_906 at 918.626 kb on + strand, within HP15_906 at 918.821 kb on + strand, within HP15_906 at 918.892 kb on + strand at 918.900 kb on - strand at 918.900 kb on - strand at 918.954 kb on + strand at 918.975 kb on + strand at 919.122 kb on + strand at 919.271 kb on + strand, within HP15_907 at 919.357 kb on - strand, within HP15_907 at 919.365 kb on - strand, within HP15_907 at 919.365 kb on - strand, within HP15_907 at 919.382 kb on + strand, within HP15_907 at 919.894 kb on - strand, within HP15_907 at 919.894 kb on - strand, within HP15_907 at 920.057 kb on + strand, within HP15_907 at 920.060 kb on - strand, within HP15_907 at 920.070 kb on - strand, within HP15_907 at 920.146 kb on - strand, within HP15_907 at 920.609 kb on + strand, within HP15_908 at 920.763 kb on - strand, within HP15_908 at 921.160 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 918,120 - HP15_906 0.39 +0.1 918,273 - HP15_906 0.50 -1.3 918,362 + HP15_906 0.56 -0.8 918,407 + HP15_906 0.59 -0.1 918,499 - HP15_906 0.65 -0.6 918,543 + HP15_906 0.68 +0.7 918,587 + HP15_906 0.71 +0.8 918,626 + HP15_906 0.73 -0.6 918,821 + HP15_906 0.86 +1.0 918,892 + -0.5 918,900 - +0.3 918,900 - -0.5 918,954 + -0.3 918,975 + -1.1 919,122 + -0.4 919,271 + HP15_907 0.13 -1.2 919,357 - HP15_907 0.20 +0.4 919,365 - HP15_907 0.21 -1.4 919,365 - HP15_907 0.21 -0.6 919,382 + HP15_907 0.23 -1.7 919,894 - HP15_907 0.66 +0.0 919,894 - HP15_907 0.66 -1.0 920,057 + HP15_907 0.80 -0.5 920,060 - HP15_907 0.81 +0.7 920,070 - HP15_907 0.82 -1.0 920,146 - HP15_907 0.88 +0.5 920,609 + HP15_908 0.34 -1.8 920,763 - HP15_908 0.53 -0.5 921,160 - -0.3
Or see this region's nucleotide sequence